BAC Information

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BAC

Clone NameB6Ng01-112I16
Chromosome2 (Build37)11 (Build37)
Map Location 131,008,761 - 131,009,41177,543,853 - 77,544,036
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb
Downstream geneCdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112I16.bB6Ng01-112I16.g
ACCDH918578DH918579
length1,002892
definitionDH918578|Mus musculus domesticus DNA, BAC clone: B6Ng01-112I16, 5' end.DH918579|Mus musculus domesticus DNA, BAC clone: B6Ng01-112I16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(131,008,761 - 131,009,411)(77,543,853 - 77,544,036)
sequence
gaattcacagagctgagtgctagaattgaagtctggtgccaccacacctg
gctttggttttggtttttgagttagagactcagtacatagcccagggaac
cctcactcttgttattattctccggtcttagcgacccaagcgacaaatat
gctttgtttgcttgcttagacttacttattttatattcattgtcttagtc
agtatcctcttgctgtggaaagacaccatgacctcggggacttgatttca
ccttcagaggtttagttcactgttagggtgggaagcctagagccatgcag
acagacaccgtgcaggagaagtagctgagagttctacaaacagcaaggag
agagagagagagcctccaggcctggcttgggattttgaaacctcaaagct
cacccccagtgacacatttatcagcaaaggccacatctactctaataaat
aggtgccattcctaagcattcagatctatgagccagcttacgggtgtcac
tcctattcaaaccaccatatgtataaaagctttgatcacatatatgtctg
tgcaccacgcctagaacagggcattggatccctcagaacgagtgttacac
acagttgtgagctgccatgtggatgctgggaatcaaacctgagtcttatg
gaagagttcaagtgctcccatcccctacacatacaactcatgaccctctg
cctgagagtgatgtcacccacagtaggctgggccctcccacatcaattta
ttaatcaagaaaaagtcccacagacttgtttacagggcagtctgctagag
gcatattctcaactaaggttctgttcatcccaagatttggaggagaaaga
ccactgacccaatcattatggccaattaattaagcaagtacttaattaaa
gtagtttttcactctgcacaaggctgcctcccataagtgggaccagaggt
cagcatagtatgtgagacacagggtagggtgttccaatgagggattgctg
gg
gaattctgtgctaaaaccatctggccttaggtgtttgtttgtgtttgttt
gttgttcttttttttaaagattttatttattatttattttatatgtaagt
acactgtagctgtcttcagacacaccaggagagggagtcagatgtcatta
agaatggttgtaagccaccatgtggttgctgggatttgaactcagaacct
tcggaagagcagtcagtgctcttaactgctgagccatctctccagccccg
tttttttgttgttctgtcttcaagtgctgggataacatgtttgtctccag
acattgacttcaggagaattatcctttattcattcattcattcatttttg
gtttttcgggagagaattatcctcttaatcttgtttttgggtttgttttg
ctttggtagacttaattactgcctctaaatagaagtaataaataggggtt
ataggtctgtatttatacatcaataaattatcctctttttttttttttta
gattttccaatatgatggagtacaggattttaaagtgtgtccttagtgat
tcttgaatgtccttagtgtctgttaggtcccccttctcatctctgatttt
gttaatttgcatatactctctatgccttattgttaatttagctaaggttt
tgtcagtcttagtgatgttcctctcaaagaaccactcttagtttcattaa
ttcttttgtattagttttgttatttgtttctattttattgatttcagtcc
ctgagtttgattgtttcttgccatcttctccttttgggtatggtatgatt
tcttcttttagttttagagatttcaggtgttttctactagtctgagatct
ccccagtttttgctttttggtttttattttgttttgttttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_131008761_131009411
seq2: B6Ng01-112I16.b_41_691

seq1  GAATTCACAGAGCTGAGTGCTAGAATTGAAGTCTGGTGCCACCACACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGCTGAGTGCTAGAATTGAAGTCTGGTGCCACCACACCTG  50

seq1  GCTTTGGTTTTGGTTTTTGAGTTAGAGACTCAGTACATAGCCCAGGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGTTTTGGTTTTTGAGTTAGAGACTCAGTACATAGCCCAGGGAAC  100

seq1  CCTCACTCTTGTTATTATTCTCCGGTCTTAGCGACCCAAGCGACAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCTTGTTATTATTCTCCGGTCTTAGCGACCCAAGCGACAAATAT  150

seq1  GCTTTGTTTGCTTGCTTAGACTTACTTATTTTATATTCATTGTCTTAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTTGCTTGCTTAGACTTACTTATTTTATATTCATTGTCTTAGTC  200

seq1  AGTATCCTCTTGCTGTGGAAAGACACCATGACCTCGGGGACTTGATTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCTCTTGCTGTGGAAAGACACCATGACCTCGGGGACTTGATTTCA  250

seq1  CCTTCAGAGGTTTAGTTCACTGTTAGGGTGGGAAGCCTAGAGCCATGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAGGTTTAGTTCACTGTTAGGGTGGGAAGCCTAGAGCCATGCAG  300

seq1  ACAGACACCGTGCAGGAGAAGTAGCTGAGAGTTCTACAAACAGCAAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACCGTGCAGGAGAAGTAGCTGAGAGTTCTACAAACAGCAAGGAG  350

seq1  AGAGAGAGAGAGCCTCCAGGCCTGGCTTGGGATTTTGAAACCTCAAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGCCTCCAGGCCTGGCTTGGGATTTTGAAACCTCAAAGCT  400

seq1  CACCCCCAGTGACACATTTATCAGCAAAGGCCACATCTACTCTAATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCAGTGACACATTTATCAGCAAAGGCCACATCTACTCTAATAAAT  450

seq1  AGGTGCCATTCCTAAGCATTCAGATCTATGAGCCAGCTTACGGGTGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCATTCCTAAGCATTCAGATCTATGAGCCAGCTTACGGGTGTCAC  500

seq1  TCCTATTCAAACCACCATATGTATAAAAGCTTTGATCACATATATGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTCAAACCACCATATGTATAAAAGCTTTGATCACATATATGTCTG  550

seq1  TGCACCACGCCTAGAACAGGGCATTGGATCCCTCAGAACGAGTGTTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCACGCCTAGAACAGGGCATTGGATCCCTCAGAACGAGTGTTACAC  600

seq1  ACAGTTGTGAGCTGCCATGTGGATGCTGGGAATCAAACCTGAGTCTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGTGAGCTGCCATGTGGATGCTGGGAATCAAACCTGAGTCTTATG  650

seq1  G  651
      |
seq2  G  651

seq1: chr11_77543853_77544036
seq2: B6Ng01-112I16.g_129_318

seq1  TTTTTTTAAAGA-TTTATTTATT-----TATTATATGTAAGTACACTATA  44
      |||||||||||| ||||||||||     | ||||||||||||||||| ||
seq2  TTTTTTTAAAGATTTTATTTATTATTTATTTTATATGTAAGTACACTGTA  50

seq1  GCTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATCACAGATGGT  94
      ||||||||||||||| |||| ||||||  |||||| |||| |   |||||
seq2  GCTGTCTTCAGACACACCAGGAGAGGGAGTCAGATGTCATTAAGAATGGT  100

seq1  TGTAAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCTGAAGA  144
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  TGTAAGCCACCATGTGGTTGCTGGGATTTGAACTCAGAACCTTCGGAAGA  150

seq1  GCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCC  184
      ||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCC  190