BAC Information

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BAC

Clone NameB6Ng01-112M11
Chromosome2 (Build37)
Map Location 55,226,096 - 55,384,011
singlet/doubletdoublet
Overlap geneKcnj3
Upstream geneLOC100042878, Galnt13, LOC666936
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112M11.bB6Ng01-112M11.g
ACCDH918753DH918754
length970904
definitionDH918753|Mus musculus domesticus DNA, BAC clone: B6Ng01-112M11, 5' end.DH918754|Mus musculus domesticus DNA, BAC clone: B6Ng01-112M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,383,188 - 55,384,011)(55,226,096 - 55,226,921)
sequence
gaattcttccccctgcctctcatgtcactcactatgggttgtcttgtccg
gcttcaatatgaggcctttgtttgtcttattgtatctcaggttttttttt
tatttgtttgttgtctcttgaggatggctcttttgtgacagtaatcaaag
atagagtgatctggggcaaaagtagttgggcagggcagggttgagaggaa
cggatgtacaaaatgtgtggtcagaatgtattgtatgtgagaaaaatgta
cactcaattaaaacaaaacaacaaaaagaagaagaagaaatgaaaacagg
ggtgtggcaacagatactgaggaaattcaaagcatcataaatatgcagtt
ttaaaaacctgtagaaattatctcattaaatgtagaaaaagtcatgacaa
aattaaacacactttcatgataaaagtctgaggaatataaacaacattca
tcaacataataaaggtagtttatagcaagcttatagcttagtatcaactt
aaatggggagaaatgtgaagcaattatactgaaatcaggaagaagataag
attgtccactttctctgtccctgtttaatagagtacctgaagtcttagct
agagcgataaggcaacagaaagaaagtttttataaagtcatccatatatt
taattctaaagcattgattgaaaaagcaactgcagatctgcctactcact
cttaccaggaatgaattttggacatattttttagcttctcagttgctttt
tagaaattaattaatgaagggtttccctgtgttttaagttaataaggctt
taattgtaactatttaaatgctcttaactattagtaactagttaccactg
taactcagcaggagtaacagaagtcactagtcagcaatgaggtggacttt
tttttaacctatcttccctcttctccatagtgatctccctatacttacaa
acagattcttaggtacagaa
gaattctatatgtttaggtgtgttctccagtatttttttatgggagttat
ttatgtccttcttaaagtcctctatcataatcattagatgtgcttttttt
taaatgaatcttgctattctgctgtgttggggtatctaggacttgctgtg
gtggcagaactgggttatgaagatgccttggtttctgttggtaagtttct
tgtgcttgcctgtttctatcgggttgtctctggtgttagatggtcttgct
gtctctgactaaatcttgcccctcttgtgggtcgtaagactgtgatctta
ggtgtgtcagcactccttgtgaaaccatctccctcacgggaagcatttgg
atgtggaggactgtagtacagcctttgctctgggatacagatggagacct
gaaggattctgcccccagttgctccactgttcctgttcattgtgctctcc
tggcaggtgccattttggacagttattggagcaaaagtggtgatctcacc
tctgagctcagtagtgagaacactcctgggaggccagctctctcctggtg
ggatttgtgtgcagagggctgtagaatatcctttgctcaggcattatctt
tagatgtatgttaaagccttttttctttttttaagaaattagagtggtta
cactatcttgtttcttgaatctgtttgcttagaaaatatttttttttctg
gacacttaccatggggtaaagtttatctttgatattaaagtatatttctt
atatgcagcacaatgatgaattgtgctttgagtccattctgttagcccgt
gcctttttattgaggatttgagtgcattgattttgagagatataaatgac
tagtgattgctaattcctgtcattttgatgttagtggtgagtgtttgtgg
gtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_55383188_55384011
seq2: B6Ng01-112M11.b_193_1016 (reverse)

seq1  TTCTGTACCT-AGAATCTGTTTCGTAAGTATA-GGAGATCACTATGGAGA  48
      |||||||||| ||||||||||| ||||||||| |||||||||||||||||
seq2  TTCTGTACCTAAGAATCTGTTT-GTAAGTATAGGGAGATCACTATGGAGA  49

seq1  GGAGGGAAGATAGGTTAAAAAAAAGTCCACCTCATTGCTGACTAGTGACT  98
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGATAGGTTAAAAAAAAGTCCACCTCATTGCTGACTAGTGACT  99

seq1  TCTGTTACTCCTGCCTGAGTTACAGTGGTAACTAGTTACTAATAGTTAAG  148
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACTCCTG-CTGAGTTACAGTGGTAACTAGTTACTAATAGTTAAG  148

seq1  AGCATTTAAATAGTTACAATTAAAGCCTTATTAACTTAAAACACAGGGAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTAAATAGTTACAATTAAAGCCTTATTAACTTAAAACACAGGGAA  198

seq1  ACCCTTCATTAATTAATTTCTAAAAAGCAACTGAGAAGCTAAAAAATATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCATTAATTAATTTCTAAAAAGCAACTGAGAAGCTAAAAAATATG  248

seq1  TCCAAAATTCATTCCTGGTAAGAGTGAGTAGGCAGATCTGCAGTTGCTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATTCATTCCTGGTAAGAGTGAGTAGGCAGATCTGCAGTTGCTTT  298

seq1  TTCAATCAATGCTTTAGAATTAAATATATGGATGACTTTATAAAAACTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCAATGCTTTAGAATTAAATATATGGATGACTTTATAAAAACTTT  348

seq1  CTTTCTGTTGCCTTATCGCTCTAGCTAAGACTTCAGGTACTCTATTAAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTTGCCTTATCGCTCTAGCTAAGACTTCAGGTACTCTATTAAAC  398

seq1  AGGGACAGAGAAAGTGGACAATCTTATCTTCTTCCTGATTTCAGTATAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGAGAAAGTGGACAATCTTATCTTCTTCCTGATTTCAGTATAAT  448

seq1  TGCTTCACATTTCTCCCCATTTAAGTTGATACTAAGCTATAAGCTTGCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCACATTTCTCCCCATTTAAGTTGATACTAAGCTATAAGCTTGCTA  498

seq1  TAAACTACCTTTATTATGTTGATGAATGTTGTTTATATTCCTCAGACTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTACCTTTATTATGTTGATGAATGTTGTTTATATTCCTCAGACTTT  548

seq1  TATCATGAAAGTGTGTTTAATTTTGTCATGACTTTTTCTACATTTAATGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGAAAGTGTGTTTAATTTTGTCATGACTTTTTCTACATTTAATGA  598

seq1  GATAATTTCTACAGGTTTTTAAAACTGCATATTTATGATGCTTTGAATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTCTACAGGTTTTTAAAACTGCATATTTATGATGCTTTGAATTT  648

seq1  CCTCAGTATCTGTTGCCACACCCCTGTTTTCATTTCTTCTTCTTCTTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTATCTGTTGCCACACCCCTGTTTTCATTTCTTCTTCTTCTTTTT  698

seq1  GTTGTTTTGTTTTAATTGAGTGTACATTTTTCTCACATACAATACATTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTGTTTTAATTGAGTGTACATTTTTCTCACATACAATACATTCT  748

seq1  GACCACACATTTTGTACATCCGTTCCTCTCAACCCTGCCCTGCCCAACTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACACATTTTGTACATCCGTTCCTCTCAACCCTGCCCTGCCCAACTA  798

seq1  CTTTTGCCCCAGATCACTCTATCTTT  824
      ||||||||||||||||||||||||||
seq2  CTTTTGCCCCAGATCACTCTATCTTT  824

seq1: chr2_55226096_55226921
seq2: B6Ng01-112M11.g_146_971

seq1  AATCATTAGATGTGCTTTTTTTTAAATGAATCTTGCTATTCTGCTGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTAGATGTGCTTTTTTTTAAATGAATCTTGCTATTCTGCTGTGTT  50

seq1  GGGGTATCTAGGACTTGCTGTGGTGGCAGAACTGGGTTATGAAGATGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATCTAGGACTTGCTGTGGTGGCAGAACTGGGTTATGAAGATGCCT  100

seq1  TGGTTTCTGTTGGTAAGTTTCTTGTGCTTGCCTGTTTCTATCGGGTTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTGTTGGTAAGTTTCTTGTGCTTGCCTGTTTCTATCGGGTTGTC  150

seq1  TCTGGTGTTAGATGGTCTTGCTGTCTCTGACTAAATCTTGCCCCTCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGTTAGATGGTCTTGCTGTCTCTGACTAAATCTTGCCCCTCTTGT  200

seq1  GGGTCGTAAGACTGTGATCTTAGGTGTGTCAGCACTCCTTGTGAAACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGTAAGACTGTGATCTTAGGTGTGTCAGCACTCCTTGTGAAACCAT  250

seq1  CTCCCTCACGGGAAGCATTTGGATGTGGAGGACTGTAGTACAGCCTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCACGGGAAGCATTTGGATGTGGAGGACTGTAGTACAGCCTTTGC  300

seq1  TCTGGGATACAGATGGAGACCTGAAGGATTCTGCCCCCAGTTGCTCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGATACAGATGGAGACCTGAAGGATTCTGCCCCCAGTTGCTCCACT  350

seq1  GTTCCTGTTCATTGTGCTCTCCTGGCAGGTGCCATTTTGGACAGTTATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTTCATTGTGCTCTCCTGGCAGGTGCCATTTTGGACAGTTATTG  400

seq1  GAGCAAAAGTGGTGATCTCACCTCTGAGCTCAGTAGTGAGAACACTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAAGTGGTGATCTCACCTCTGAGCTCAGTAGTGAGAACACTCCTG  450

seq1  GGAGGCCAGCTCTCTCCTGGTGGGATTTGTGTGCAGAGGGCTGTAGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGCTCTCTCCTGGTGGGATTTGTGTGCAGAGGGCTGTAGAATA  500

seq1  TCCTTTGCTCAGGCATTATCTTTAGATGTATGTTAAAGCCTTTTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCTCAGGCATTATCTTTAGATGTATGTTAAAGCCTTTTTTCTTT  550

seq1  TTTTAAGAAATTAGAGTGGTTACACTATCTTGTTTCTTGAATCTGTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGAAATTAGAGTGGTTACACTATCTTGTTTCTTGAATCTGTTTGC  600

seq1  TTAGAAAATATTTTTTTTTCTGGACACTTACCATGGGGTAAAGTTTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAATATTTTTTTTTCTGGACACTTACCATGGGGTAAAGTTTATCT  650

seq1  TTGATATTAAAGTATATTTCTTATATGCAGCACAATGATGAATTGTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTAAAGTATATTTCTTATATGCAGCACAATGATGAATTGTGCTT  700

seq1  TGAGTCCATTCTGTTAGCCCGTGCCTTTTTATTGAGGATTTGAGTGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCATTCTGTTAGCCCGTGCCTTTTTATTGAGGATTTGAGTGCATT  750

seq1  GATTTTGAGAGATATAAATGACTAGTGATTGCTAATTCCTGTCATTTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGAGAGATATAAATGACTAGTGATTGCTAATTCCTGTCATTTTGA  800

seq1  TGTTAGTGGTGAGTGTTTGTGGTTGT  826
      |||||||||||||||||||||| |||
seq2  TGTTAGTGGTGAGTGTTTGTGGGTGT  826