BAC Information

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BAC

Clone NameB6Ng01-112N22
Chromosome2 (Build37)
Map Location 53,029,750 - 53,030,819
singlet/doubletsinglet
Overlap genePrpf40a
Upstream geneNeb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2
Downstream geneArl6ip6, LOC666872, LOC666876, LOC207933, Rprm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112N22.bB6Ng01-112N22.g
ACCDH918816DH918817
length1,1121,071
definitionDH918816|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N22, 5' end.DH918817|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcagaatggctaagttca
aaaattctgttgacagcagatactggcaaggatgtgaagaaagaggaaca
ctcctccattgttgatgggattgcaagcttgtacaaccactctggcaatc
agtctggcggttcttcagaaaattggatatagtactaccataggatccag
caacacctctcctggttatatatccagaagatgtcccaactggtaagaag
gacacatgctccactatgttcatagcagccttatttataatagccagaag
ctggaaagaacccagatacccctcaacagaggaatggatacagaaaatgt
ggtacatttacacaatggagtactactcagctattaaaaaaatgaattta
tgaaattcctaggcaaattgttggacttggagggcatcatcctgagtgag
gtaacccaatcacaaaagaactcacatgatatgtactcactgataagtgg
atattagtccagaaacttagaatacccaaatataagatacaatttgtgaa
acacatgaaactcaagaacaaagaccagagtgtggacactttgccccttc
ttagaattgggaacaaaacacccatggaaggagttacagagacaaagttt
ggagctatgacaaaaggatggaccatctagagacttccatatccagggat
ccatcccataatcagccgccaaatgcggacaccattgcataccctagcaa
gattttgcttaaaggacccagatatagctgtctcttgtgagactatgctg
gggcctagcaaacacagaagtggatgctcacagtcagctattggatggat
cacaggcccccatggagaagctagagaaagcacccaagagctaaagggtc
tgcaccctatagtggaactacatatgcactaaccagtaccccccgagctc
gtgtctctagctcatatgtatcagttgaagagagccatgtcatgcaactt
tatatgctcagtacagtacaccagggcaagaaagtgaatagtgggtaaga
ggagtggggggc
gaattctaaaattcatatgaatatccaaagtactcttcaaaaaaacccaa
ggacttgggctggagagatggctcagtggttaagagcactgactgttctt
ctagaggtcctgagttcaattcccagcaatcacatggtggatcacaacca
tctgcaatggggtctgatgccctcttctggtgtgtctgaagagagcacta
gtgaatacataaaacaaaacaaaacaaacaaacaaaacatatctatctat
ctatctatctatctatctatctatctatctatctatctatctatctatct
aatcccaagattcaggaatcagaggcaagaaatctctctgagtttgaggc
cagcctggtctatataatgggttccaggacttttaggggaacatagaaag
acccttgctcaaaagaacaaaggaacaatcaaaaaaggagtatgccaaca
cctaactttaaatttcactaaataaccacaataaaaaattaacaaaaaac
acagcaaatcataaaggaaaaaccagacatacatctgtattagttagttt
ttttttgttgtaacaagatcttgatagaacattttaaaaagagaatttat
tttggttcaaatgtcaaagtccaccatagcagagacagtaccgtgggtgc
agcaagatagagaaagaaagcaccctctccttttctcccttagattccat
cagaaccttcagtctataaatttgtgctccacaaattcagtctttctcct
taatttaaactctgaaaatttctcacagacacacccagaaattcacctca
caaatcttcctacatgagtctccataaagctcagctgacaatgagatgac
aactgaggaaagaggttacaggggataaaacaaatcaaacaaaatccctt
gtcttgttacggttctattgccgtgatgacacaccttgaccaagataaag
agatatttaactgggttggcttacagctcagtggtttactccacttatta
caggaagtatgatgacatgcagcagacatggttgcttgagagggagctga
agttctacatctggatcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_53029750_53030819
seq2: B6Ng01-112N22.g_68_1138

seq1  GAATTCTAAAATTCATATGAATATCCAAAGTACTCTTCAAAAAAACCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAATTCATATGAATATCCAAAGTACTCTTCAAAAAAACCCAA  50

seq1  GGACTTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGTTCTT  100

seq1  CTAGAGGTCCTGAGTTCAATTCCCAGCAATCACATGGTGGATCACAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGTCCTGAGTTCAATTCCCAGCAATCACATGGTGGATCACAACCA  150

seq1  TCTGCAATGGGGTCTGATGCCCTCTTCTGGTGTGTCTGAAGAGAGCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAATGGGGTCTGATGCCCTCTTCTGGTGTGTCTGAAGAGAGCACTA  200

seq1  GTGAATACATAAAACAAAACAAAACAAACAAACAAAACA----TATCTAT  246
      |||||||||||||||||||||||||||||||||||||||    |||||||
seq2  GTGAATACATAAAACAAAACAAAACAAACAAACAAAACATATCTATCTAT  250

seq1  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  300

seq1  AATCCCAAGATTCAGGAATCAGAGGCAAGAAATCTCTCTGAGTTTGAGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAAGATTCAGGAATCAGAGGCAAGAAATCTCTCTGAGTTTGAGGC  350

seq1  CAGCCTGGTCTATATAATGGGTTCCAGGACTTTTAGGGGAACATAGAAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTATATAATGGGTTCCAGGACTTTTAGGGGAACATAGAAAG  400

seq1  ACCCTTGCTCAAAAGAACAAAGGAACAATCAAAAAAGGAGTATGCCAACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGCTCAAAAGAACAAAGGAACAATCAAAAAAGGAGTATGCCAACA  450

seq1  CCTAACTTTAAATTTCACTAAATAACCACAATAAAAAATTAACAAAAAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTTTAAATTTCACTAAATAACCACAATAAAAAATTAACAAAAAAC  500

seq1  ACAGCAAATCATAAAGGAAAAACCAGACATACATCTGTATTAGTTAGTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAATCATAAAGGAAAAACCAGACATACATCTGTATTAGTTAGTTT  550

seq1  TTTTTTGTTGTAACAAGATCTTGATAGAACATTTTAAAAAGAGAATTTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGTAACAAGATCTTGATAGAACATTTTAAAAAGAGAATTTAT  600

seq1  TTTGGTTCAAATGTCAAAGTCCACCATAGCAGAGACAGTACCGTGGGTGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTCAAATGTCAAAGTCCACCATAGCAGAGACAGTACCGTGGGTGC  650

seq1  AGCAAGATAGAGAAAGAAAGCACCCTCTCCTTTTCTCCCTTAGATTCCAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATAGAGAAAGAAAGCACCCTCTCCTTTTCTCCCTTAGATTCCAT  700

seq1  CAGAACCTTCAGTCTATAAATTTGTGCTCCACAAATTCAGTCTTTCTCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCTTCAGTCTATAAATTTGTGCTCCACAAATTCAGTCTTTCTCCT  750

seq1  TAATTTAAACTCTGAAAATTTCTCACAGACACACCCAGAAATTCACCTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAACTCTGAAAATTTCTCACAGACACACCCAGAAATTCACCTCA  800

seq1  CAAATCTTCCTACATGAGTCTCCATAAAGCTCAGCTGACAATGAGATGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTCCTACATGAGTCTCCATAAAGCTCAGCTGACAATGAGATGAC  850

seq1  AACTGAGGAAAGAGGTTACAGGGGGATAAAACAAATCAAACAAAATCCCT  896
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AACTGAGGAAAGAGGTTACA-GGGGATAAAACAAATCAAACAAAATCCCT  899

seq1  TGTCTTGTTACGGTTCTATTGCCGTGATGACACACCTTGACCAAGATAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGTTACGGTTCTATTGCCGTGATGACACACCTTGACCAAGATAAA  949

seq1  GGAGATATTTAACTGGGTTGGCTTACAGCTCAGTGGTTTACTCCACTTAT  996
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GAGATATTTAACTGGGTTGGCTTACAGCTCAGTGGTTTACTCCACTTAT  998

seq1  TACAGGAAGTATGATGACATGCAGGCAGACATGG-TGCTGGAGAGGGAGC  1045
      ||||||||||||||||||||||| |||||||||| |||| ||||||||||
seq2  TACAGGAAGTATGATGACATGCA-GCAGACATGGTTGCTTGAGAGGGAGC  1047

seq1  TGAGAGTTCTACATCTGGATCAGCA  1070
      ||| |||||||||||||||||||||
seq2  TGA-AGTTCTACATCTGGATCAGCA  1071