BAC Information

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BAC

Clone NameB6Ng01-113A11
Chromosome1 (Build37)2 (Build37)
Map Location 87,393,915 - 87,394,09613,163,748 - 13,164,599
singlet/doubletsingletsinglet
Overlap geneLOC100040213, LOC100039794
Upstream genenone
Downstream geneEG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113A11.bB6Ng01-113A11.g
ACCDH918928DH918929
length99855
definitionDH918928|Mus musculus domesticus DNA, BAC clone: B6Ng01-113A11, 5' end.DH918929|Mus musculus domesticus DNA, BAC clone: B6Ng01-113A11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,393,915 - 87,394,096)(13,163,748 - 13,164,599)
sequence
aagatgtgagtttgtgtgtgtgtgtgtgtctctgtgtgtttgtgtatgtg
tttgtgtatgtgagtgtattagtatgtgtgcttgaatgtgttcctatgt
gaattcaaggacaagagatactctgaaattaaagggctagcaggacttga
catgtagatttgaagttggatcctttcttgtaaagaaatggggtatttat
tggacgggggctcagattacatttggccatgatatggttttgatggtcat
gtaggacctctcttcaccctggtattccctgaagcttataaggtgtcaac
ttgatgttggtgaaccacactaggatggtttgcctttgtattttgaactt
ttccataattatgtttgacatgaaaacaggccattggacatcacagcaga
ggttatgcttaggggcggcgtgtactctctgtcttttcagcctgctggga
tctgttcttattatccctttaaacaaaaatttctacagcattaaaagaat
gtgcttagagacagagcattggaagaagatatgaaccggcttcttatata
aatatacgtttagacttctgagtgccctgcaaagttttacaacctgaagt
ggaacatggcaagctaattttcccccttcccctcactgtttgcaactgtt
atgctcagctcattttactcctttatacttagggaactattgtagccata
ggggaaacagatagactctccatcagaagactgaaaactggcaagcagta
gacattccaaaatcaatacttggatatgtcaactaaactacatttagagg
caatctggacagggttttacctccgatcctgcaacaatgcgtagaggaat
tctgggaaggatgatgggggtggggctacccactgctggtctactgacac
cagtttgatatgaagggtctcattcagtataggcaaggtttccagtttct
ctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_87393915_87394096
seq2: B6Ng01-113A11.b_64_150 (reverse)

seq1  ACATAGGAACACATTCATGTACACA----CATGCACACATATGCAAAGAT  46
      ||||||||||||||||| | |||||     || ||| || || || | | 
seq2  ACATAGGAACACATTCAAGCACACATACTAATACACTCACATACACAAAC  50

seq1  ACATACATTGGTTATTGGAATAGATGTGATGTCTATATTTTTATTTGTTT  96
      ||||||                                            
seq2  ACATAC--------------------------------------------  56

seq1  TTTAAAATATTGAATATGATCAGCCTTTGTCATGAAAGGTATTCTTTAGG  146
                                                        
seq2  --------------------------------------------------  56

seq1  GATACATACAAACACACACACACACACACACACACA--  182
             ||||||||||| | |||||||||||||||  
seq2  -------ACAAACACACAGAGACACACACACACACACA  87

seq1: chr2_13163748_13164599
seq2: B6Ng01-113A11.g_71_925 (reverse)

seq1  CAGAGAGAAACTGGAAGCCTTGCCTATGCTGAATGAGA-CCTTCATATCA  49
      |||||||||||||||| |||||||||| |||||||||| |||||||||||
seq2  CAGAGAGAAACTGGAAACCTTGCCTATACTGAATGAGACCCTTCATATCA  50

seq1  AACTGGTGTCAGTAGACCAGCAGTGGGTAGCCCCACCCCCATCATCCTTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTGTCAGTAGACCAGCAGTGGGTAGCCCCACCCCCATCATCCTTC  100

seq1  CCAGAATTCCTCTACGCATTGTTGCAGGATCGGAGGT-AAACCCTGTCCA  148
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCAGAATTCCTCTACGCATTGTTGCAGGATCGGAGGTAAAACCCTGTCCA  150

seq1  GATTGCCTCTAAATGTAGTTTAGTTGACATATCCAAGTATTGA-TTTGGA  197
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATTGCCTCTAAATGTAGTTTAGTTGACATATCCAAGTATTGATTTTGGA  200

seq1  ATGTCTACTGCTTGCCAGTTTTCAGTCTTCTGATGGAGAGTCTATCTGTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTACTGCTTGCCAGTTTTCAGTCTTCTGATGGAGAGTCTATCTGTT  250

seq1  TCCCCTATGGCTACAATAGTTCCCTAAGTATAAAGGAGTAAAATGAGCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTATGGCTACAATAGTTCCCTAAGTATAAAGGAGTAAAATGAGCTG  300

seq1  AGCATAACAGTTGCAAACAGTGAGGGGAAGGGGGAAAATTAGCTTGCCAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAACAGTTGCAAACAGTGAGGGGAAGGGGGAAAATTAGCTTGCCAT  350

seq1  GTTCCACTTCAGGTTGTAAAACTTTGCAGGGCACTCAGAAGTCTAAACGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACTTCAGGTTGTAAAACTTTGCAGGGCACTCAGAAGTCTAAACGT  400

seq1  ATATTTATATAAGAAGCCGGTTCATATCTTCTTCCAATGCTCTGTCTCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATATAAGAAGCCGGTTCATATCTTCTTCCAATGCTCTGTCTCTA  450

seq1  AGCACATTCTTTTAATGCTGTAGAAATTTTTGTTTAAAGGGATAATAAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTCTTTTAATGCTGTAGAAATTTTTGTTTAAAGGGATAATAAGA  500

seq1  ACAGATCCCAGCAGGCTGAAAAGACAGAGAGTACACGCCGCCCCTAAGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCCCAGCAGGCTGAAAAGACAGAGAGTACACGCCGCCCCTAAGCA  550

seq1  TAACCTCTGCTGTGATGTCCAATGGCCTGTTTTCATGTCAAACATAATTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCTGCTGTGATGTCCAATGGCCTGTTTTCATGTCAAACATAATTA  600

seq1  TGGAAAAGTTCAAAATACAAAGGCAAACCATCCTAGTGTGGTTCACCAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAGTTCAAAATACAAAGGCAAACCATCCTAGTGTGGTTCACCAAC  650

seq1  ATCAAGTTGACACCTTATAAGCTTCAGGGAATACCAGGGTGAAGAGAGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTTGACACCTTATAAGCTTCAGGGAATACCAGGGTGAAGAGAGGT  700

seq1  CCTACATGACCATCAAAACCATATCATGGCCAAATGTAATCTGAGCCCCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATGACCATCAAAACCATATCATGGCCAAATGTAATCTGAGCCCCC  750

seq1  GTCCAATAAATACCCCATTTCTTTACAAGAAAGGATCCAACTTCAAATCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATAAATACCCCATTTCTTTACAAGAAAGGATCCAACTTCAAATCT  800

seq1  ACATGTCAAGTCCTGCTAGCCCTTTAATTTCAGAGTATCTCTTGTCCTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCAAGTCCTGCTAGCCCTTTAATTTCAGAGTATCTCTTGTCCTTG  850

seq1  AATTC  852
      |||||
seq2  AATTC  855