BAC Information

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BAC

Clone NameB6Ng01-113A19
Chromosome2 (Build37)
Map Location 122,891,023 - 123,022,943
singlet/doubletdoublet
Overlap genenone
Upstream gene4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113A19.bB6Ng01-113A19.g
ACCDH918944DH918945
length1,051775
definitionDH918944|Mus musculus domesticus DNA, BAC clone: B6Ng01-113A19, 5' end.DH918945|Mus musculus domesticus DNA, BAC clone: B6Ng01-113A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,021,896 - 123,022,943)(122,891,023 - 122,891,792)
sequence
gaattccagaaaataatattatattcttgtatgaatataaattttataca
gaatatggaaaaaaacaaccatgtattctgaagaagtcccatagaagtca
gttaaaataattaaaagactgtgaaataagcataccagagtgggcatgaa
gatatacctaatgattgtttcataagaaaatccactatagacaccatgtt
ccagatccaaaaggaatgcacagttgcagagagtaaaatccaattttgcc
aagagattaagtagtaactacatgtatagattcagagggtttgtttgtga
agatatttatagcactttgctcagttatactaattggatcataggatccc
aatcaatgacattcaaaatctatcacagtgaaaatagcaaggctgaagag
aaaacaatggcacctaacccacaggtcacaatgaaaagagttcatgtgtc
aacccaggagcaagttagacaggtaaccaacagttgtaccaacaaagaaa
taaatgatgggtggcaaatctcaaggagaggactccattaaaaagtcata
atctactgtgtagtttctttttcattttgcaattttattagatattttct
ttacttacatttcagatgttattcccgttcctagtttcccctctgaaaat
cctctatctcctcctccctccccctgctcaccaacccaccaacttctgct
ttctggccctggaatccccctatactagggcatataatcttcacaagacc
aagggtctctcctcccactgatgaccgactaggccatcctctgctacata
tgaggctagagccatgagtcccaccatgtgttttctttgattgatagttt
agtcccagggagctctgggggcactggttagttcatattgttgttcctcc
tatggggctgcaaaccccttcagctctgtggatacctcctctagctcttc
cattggggaccctgtgctccatcgaatggtgttgtgagcatccactttct
gtatttgtcagccactggcagagcctgtttaggagaacagttttattcag
g
gaattccagttaatattcaagacagtcagtgcttttaaaaccggggaaca
tgggaaatgagagactattccctacacagaaagtgattcgagcaacccct
ttttcgatttcaaaatgttcacatttttgtaattcatgggacttttctct
gtagcaaacgaagaaaaccattgtccataaaatttagcagctttgagcaa
aattgaggaaatgctggggaaaattctgcagtgctgttttgtctacagaa
cactaaagggaaataatagctgagaggcggcaagaaatgactagtctctg
ctataaaggaattagcttggtaaatgtattcttttttaaattaaaaagaa
attgcctcaattaactgcttttaggggaaaaaagggcataacggtatttt
aaaaacaaagcttcctgggaattgcaggtatttattttaaatcaacttgg
ttaagaaccttaacttgctctacagatcactgactaaatgataccatagt
aagaaaacagagatgacgatttttttcttcatgatcttcctccacgctca
gcaaagggaggtagtctctttaagccaagcctcactgaatctcaatactg
gctaactatttattgagtgtgtatctgattagacccacacctatctactc
ttagtccttgcatctgctacacctctgccgaatatatgtgggagaagggg
atactgatgttgaccaagctaaaaaacaatttttccaatccatcccaaga
gcatcctgggctgtgtctgtctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123021896_123022943
seq2: B6Ng01-113A19.b_50_1100 (reverse)

seq1  CCTG-ATAAAACTG-TCTCCT-AACAGGCTCTGCCAGTGGCTGACAAATA  47
      |||| ||||||||| |||||| ||||||||||||||||||||||||||||
seq2  CCTGAATAAAACTGTTCTCCTAAACAGGCTCTGCCAGTGGCTGACAAATA  50

seq1  CAG-AAGTGGATGCTCACAACCACCATTCGATGGAGCACAGGGTCCCCAA  96
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAGAAAGTGGATGCTCACAA-CACCATTCGATGGAGCACAGGGTCCCCAA  99

seq1  TGGAAGAGCTAGAGGAGGTATCCACAGAGCTGAAGGGGTTTGCAGCCCCA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGCTAGAGGAGGTATCCACAGAGCTGAAGGGGTTTGCAGCCCCA  149

seq1  TAGGAGGAACAACAATATGAACTAACCAGTGCCCCCAGAGCTCCCTGGGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGAACAACAATATGAACTAACCAGTGCCCCCAGAGCTCCCTGGGA  199

seq1  CTAAACTATCAATCAAAGAAAACACATGGTGGGACTCATGGCTCTAGCCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTATCAATCAAAGAAAACACATGGTGGGACTCATGGCTCTAGCCT  249

seq1  CATATGTAGCAGAGGATGGCCTAGTCGGTCATCAGTGGGAGGAGAGACCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTAGCAGAGGATGGCCTAGTCGGTCATCAGTGGGAGGAGAGACCC  299

seq1  TTGGTCTTGTGAAGATTATATGCCCTAGTATAGGGGGATTCCAGGGCCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTGTGAAGATTATATGCCCTAGTATAGGGGGATTCCAGGGCCAG  349

seq1  AAAGCAGAAGTTGGTGGGTTGGTGAGCAGGGGGAGGGAGGAGGAGATAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAAGTTGGTGGGTTGGTGAGCAGGGGGAGGGAGGAGGAGATAGA  399

seq1  GGATTTTCAGAGGGGAAACTAGGAACGGGAATAACATCTGAAATGTAAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCAGAGGGGAAACTAGGAACGGGAATAACATCTGAAATGTAAGT  449

seq1  AAAGAAAATATCTAATAAAATTGCAAAATGAAAAAGAAACTACACAGTAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATATCTAATAAAATTGCAAAATGAAAAAGAAACTACACAGTAG  499

seq1  ATTATGACTTTTTAATGGAGTCCTCTCCTTGAGATTTGCCACCCATCATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGACTTTTTAATGGAGTCCTCTCCTTGAGATTTGCCACCCATCATT  549

seq1  TATTTCTTTGTTGGTACAACTGTTGGTTACCTGTCTAACTTGCTCCTGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTGTTGGTACAACTGTTGGTTACCTGTCTAACTTGCTCCTGGG  599

seq1  TTGACACATGAACTCTTTTCATTGTGACCTGTGGGTTAGGTGCCATTGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACATGAACTCTTTTCATTGTGACCTGTGGGTTAGGTGCCATTGTT  649

seq1  TTCTCTTCAGCCTTGCTATTTTCACTGTGATAGATTTTGAATGTCATTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCAGCCTTGCTATTTTCACTGTGATAGATTTTGAATGTCATTGA  699

seq1  TTGGGATCCTATGATCCAATTAGTATAACTGAGCAAAGTGCTATAAATAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATCCTATGATCCAATTAGTATAACTGAGCAAAGTGCTATAAATAT  749

seq1  CTTCACAAACAAACCCTCTGAATCTATACATGTAGTTACTACTTAATCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAAACAAACCCTCTGAATCTATACATGTAGTTACTACTTAATCTC  799

seq1  TTGGCAAAATTGGATTTTACTCTCTGCAACTGTGCATTCCTTTTGGATCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAAATTGGATTTTACTCTCTGCAACTGTGCATTCCTTTTGGATCT  849

seq1  GGAACATGGTGTCTATAGTGGATTTTCTTATGAAACAATCATTAGGTATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATGGTGTCTATAGTGGATTTTCTTATGAAACAATCATTAGGTATA  899

seq1  TCTTCATGCCCACTCTGGTATGCTTATTTCACAGTCTTTTAATTATTTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGCCCACTCTGGTATGCTTATTTCACAGTCTTTTAATTATTTTA  949

seq1  ACTGACTTCTATGGGACTTCTTCAGAATACATGGTTGTTTTTTTCCATAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTCTATGGGACTTCTTCAGAATACATGGTTGTTTTTTTCCATAT  999

seq1  TCTGTATAAAATTTATATTCATACAAGAATATAATATTATTTTCTGGAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAAAATTTATATTCATACAAGAATATAATATTATTTTCTGGAAT  1049

seq1  TC  1048
      ||
seq2  TC  1051

seq1: chr2_122891023_122891792
seq2: B6Ng01-113A19.g_69_843

seq1  GAATTCCAGTCAATATTCAAGACAGTCAGTGCTTTTAAAACCGGGGAACA  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTAATATTCAAGACAGTCAGTGCTTTTAAAACCGGGGAACA  50

seq1  TGGGAAATGAGAGACTATTCCCTACACAGAAAGTGATTCGAGCAACCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATGAGAGACTATTCCCTACACAGAAAGTGATTCGAGCAACCCCT  100

seq1  TTTTCGATTTCAAAATGTTCACATTTTTGTAATTCATGGGACTTTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGATTTCAAAATGTTCACATTTTTGTAATTCATGGGACTTTTCTCT  150

seq1  GTAGCAAACGAAGAAAACCATTGTCCATAAAATTTAGCAGCTTTGAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAACGAAGAAAACCATTGTCCATAAAATTTAGCAGCTTTGAGCAA  200

seq1  AATTGAGGAAATGCTGGGGAAAATTCTGCAGTGCTGTTTTGTCTACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGGAAATGCTGGGGAAAATTCTGCAGTGCTGTTTTGTCTACAGAA  250

seq1  CACTAAAGGGAAATAATAGCTGAGAGGCGGCAAGAAATGACTAGTCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAGGGAAATAATAGCTGAGAGGCGGCAAGAAATGACTAGTCTCTG  300

seq1  CTATAAAGGAATTAGCTTGGTAAATGTATTCTTTTTTAAATTAAAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGGAATTAGCTTGGTAAATGTATTCTTTTTTAAATTAAAAAGAA  350

seq1  ATTGCCTCAATTAACTGCTTTTAGGGGAAAAAAGGGCATAACGGTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTCAATTAACTGCTTTTAGGGGAAAAAAGGGCATAACGGTATTTT  400

seq1  AAAAACAAAGCTTCCTGGGAATTGCAGGTATTTATTTTAAATCAACTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAGCTTCCTGGGAATTGCAGGTATTTATTTTAAATCAACTTGG  450

seq1  TTAAGAACCTTAACTTGCTCTACAGATCACTGACTAAATGATACCATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACCTTAACTTGCTCTACAGATCACTGACTAAATGATACCATAGT  500

seq1  AAGAAAACAGAGATGACGATTTTTTTCTTCATGATCTTCCTCCACGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACAGAGATGACGATTTTTTTCTTCATGATCTTCCTCCACGCTCA  550

seq1  GCAAAGGGAGGTAGTCTCTTTAAGCCAAGCCTCACTGAATCTCAATACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGGAGGTAGTCTCTTTAAGCCAAGCCTCACTGAATCTCAATACTG  600

seq1  GCTAACTATTTATTGAGTGTGTATCTGATTAGACCCACACCTATCTACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTATTTATTGAGTGTGTATCTGATTAGACCCACACCTATCTACTC  650

seq1  TTAGTCCTTGCATCTGCTACACCTCTGCCGAATATATGTGGGAGAA-GGG  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAGTCCTTGCATCTGCTACACCTCTGCCGAATATATGTGGGAGAAGGGG  700

seq1  ATACTGATGTTGACCAAGCT-AAAAACAA-TTTTCCAATCCATCCC-AGA  746
      |||||||||||||||||||| |||||||| |||||||||||||||| |||
seq2  ATACTGATGTTGACCAAGCTAAAAAACAATTTTTCCAATCCATCCCAAGA  750

seq1  GCATCCT-GGCTGTGTCTGTCTGTT  770
      ||||||| |||||||||||||||||
seq2  GCATCCTGGGCTGTGTCTGTCTGTT  775