BAC Information

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BAC

Clone NameB6Ng01-113F19
Chromosome6 (Build37)2 (Build37)
Map Location 85,609,979 - 85,610,515138,753,889 - 138,754,928
singlet/doubletsingletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113F19.bB6Ng01-113F19.g
ACCDH919177DH919178
length7171,042
definitionDH919177|Mus musculus domesticus DNA, BAC clone: B6Ng01-113F19, 5' end.DH919178|Mus musculus domesticus DNA, BAC clone: B6Ng01-113F19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,609,979 - 85,610,515)(138,753,889 - 138,754,928)
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcaaatgctttctctgcatctaacgagataatcatgtggtttttgtcttt
gagtttgtttatatactggattacgttgatggatttccatatattgaacc
atccctgcatccctgggatgaaacctacttggtcaggatggatgattgtt
ttgatgtgttcctggattcggttagcaagaactttattgaggatttttgc
atcgatattcataagggagattggtctgaagttctctatctttgttgggt
ctttttgtggtttaggtatcagagtaattgtggcttcatagaatgagttg
ggtagagtaccttctgtttctattttgtggaatagttcgtgaagaactgg
gattagatcttctttgaaggtcttatagaactctgcactaaacccatctg
gtcctgggctttttttggtggggagactattaatgactgcttctatttct
ttaggggatattggaccgtttagatcattaacctgatcttgatttagctt
tggtacctggtatatgtctagaaacttgtccatttcatccaggtttttcc
agttttgtttgagtatagccttttgtagaaggatctgatggtgtttttgg
atttcttcaggatctgttgttatgtttcccttttcatttctgattttgtt
aattagtgatgctttcc
gaattcaattcataacccttaaagaaaagcaagtagtggctgcatacacc
tataattccagtgctggtgatgcagagacaggcagatccccaaggcttgc
tatccaactggcctgtccaaattggtgagcttcagttacctaagagacat
atcttaaaaaaaaatcaggtgggtaatgattaaggggaccctcaacaatg
aactctgacctacacatgcatgttcttatgtgcacacacacatacaagta
cacacaaagaaaatctatgaactattacagaagaataccatattcctaaa
ggacaatctgcaccatgattattgacgtcagaaacacagtattcaaaagc
agcttgccttcagattacatgtcactctgaaaccatagcaaatgttaatt
tatttaatcaatattaggaaaatgaagtgagtatttgccaacaagcaact
gaagaccatgcttagaaactgaattctaacatgttcaataaaatgcattt
tggtctagatattttattaagatatggggcaaccagagtattgttcagca
atactaaacatccacacaaattattggcaaaattagctccttctggatga
tggcattgttaattatgaattcatagtgaagaaataatttccattttact
ttcaactacatttaaaaatgcagttataacataaaatgacaaagtggtat
tgtggcaacttcaaaagtgtaaatgccaggtaaggagacccaggaagaca
aatgcccacagtgcttctatgtcctgacaagtttctgacacatttctgta
cctggaaaggggaaaaaaaaaaaaaaaacaggtatggattttaggtactt
caccacagtttggagcttaagtgggaaaatcccaaaccatttggaaaagt
tgactatgtttttttttccactagcttttctgaaagccattggtcattta
ttccagaggtatggagaatctatcccatttttcatccatttctcctgtat
ctatgctggagtggtggtcaaaacaaaggcacagcaattctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85609979_85610515
seq2: B6Ng01-113F19.b_227_765 (reverse)

seq1  GGAAAGCATC-CTAATTAACAAAATCAGAAATGAAAAGGGAGATATAACA  49
      |||||||||| |||||||||||||||||||||||||||||| | ||||||
seq2  GGAAAGCATCACTAATTAACAAAATCAGAAATGAAAAGGGAAACATAACA  50

seq1  ACAGATCCTGAAGAAATCC-AAAACACCATCAGATCCTTCTACAAAAGGC  98
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACAGATCCTGAAGAAATCCAAAAACACCATCAGATCCTTCTACAAAAGGC  100

seq1  TATACTC-ATCAAAACTGG-AGAACCTGGATGAAATGGACACGTTTCTAG  146
      ||||||| | ||||||||| | ||||||||||||||||||| ||||||||
seq2  TATACTCAAACAAAACTGGAAAAACCTGGATGAAATGGACAAGTTTCTAG  150

seq1  ACAGATACCAGGTACCAAAGTTAAATCAAGATCAGGTTAATGATCTAAAC  196
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACATATACCAGGTACCAAAGCTAAATCAAGATCAGGTTAATGATCTAAAC  200

seq1  AGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAAC  246
       |||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGTCCAATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCCAC  250

seq1  CAAAAAAAAAGCCCAGGACCAAATGGGTTTAGTGCAGAGTTCTATCAGAC  296
      |  |||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  C--AAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATAAGAC  298

seq1  CTTCAAAGAAGATCTAATCCCAGTTCTTCACAAACTATTCCACAAAATAG  346
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTCAAAGAAGATCTAATCCCAGTTCTTCACGAACTATTCCACAAAATAG  348

seq1  AAACAGAAGGTACTCTACCCAACTCATTCTATGAAGCCACAATTACTCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAGGTACTCTACCCAACTCATTCTATGAAGCCACAATTACTCTG  398

seq1  ATACCTAAACCACAAAAAGACCCAACAAAGATAGAGAACTTCAGACCAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAAACCACAAAAAGACCCAACAAAGATAGAGAACTTCAGACCAAT  448

seq1  TTCCCTTATGAATATCGATGCAAAAATCCTCAATAAAGTTCTCGCTAACC  496
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCCCTTATGAATATCGATGCAAAAATCCTCAATAAAGTTCTTGCTAACC  498

seq1  GAATCCAAGAACACATCAAAACAATCATCCATCCTGACCAA  537
      ||||||| |||||||||||||||||||||||||||||||||
seq2  GAATCCAGGAACACATCAAAACAATCATCCATCCTGACCAA  539

seq1: chr2_138753889_138754928
seq2: B6Ng01-113F19.g_72_1113

seq1  GAATTCAATTCATAACCCTTAAAGAAAAGCAAGTAGTGGCTGCATACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCATAACCCTTAAAGAAAAGCAAGTAGTGGCTGCATACACC  50

seq1  TATAATTCCAGTGCTGGTGATGCAGAGACAGGCAGATCCCCAAGGCTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTCCAGTGCTGGTGATGCAGAGACAGGCAGATCCCCAAGGCTTGC  100

seq1  TATCCAACTGGCCTGTCCAAATTGGTGAGCTTCAGTTACCTAAGAGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAACTGGCCTGTCCAAATTGGTGAGCTTCAGTTACCTAAGAGACAT  150

seq1  ATCTTAAAAAAAAATCAGGTGGGTAATGATTAAGGGGACCCTCAACAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAAAAAAATCAGGTGGGTAATGATTAAGGGGACCCTCAACAATG  200

seq1  AACTCTGACCTACACATGCATGTTCTTATGTGCACACACACATACAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGACCTACACATGCATGTTCTTATGTGCACACACACATACAAGTA  250

seq1  CACACAAAGAAAATCTATGAACTATTACAGAAGAATACCATATTCCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAGAAAATCTATGAACTATTACAGAAGAATACCATATTCCTAAA  300

seq1  GGACAATCTGCACCATGATTATTGACGTCAGAAACACAGTATTCAAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATCTGCACCATGATTATTGACGTCAGAAACACAGTATTCAAAAGC  350

seq1  AGCTTGCCTTCAGATTACATGTCACTCTGAAACCATAGCAAATGTTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCCTTCAGATTACATGTCACTCTGAAACCATAGCAAATGTTAATT  400

seq1  TATTTAATCAATATTAGGAAAATGAAGTGAGTATTTGCCAACAAGCAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATCAATATTAGGAAAATGAAGTGAGTATTTGCCAACAAGCAACT  450

seq1  GAAGACCATGCTTAGAAACTGAATTCTAACATGTTCAATAAAATGCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCATGCTTAGAAACTGAATTCTAACATGTTCAATAAAATGCATTT  500

seq1  TGGTCTAGATATTTTATTAAGATATGGGGCAACCAGAGTATTGTTCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTAGATATTTTATTAAGATATGGGGCAACCAGAGTATTGTTCAGCA  550

seq1  ATACTAAACATCCACACAAATTATTGGCAAAATTAGCTCCTTCTGGATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAACATCCACACAAATTATTGGCAAAATTAGCTCCTTCTGGATGA  600

seq1  TGGCATTGTTAATTATGAATTCATAGTGAAGAAATAATTTCCATTTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTGTTAATTATGAATTCATAGTGAAGAAATAATTTCCATTTTACT  650

seq1  TTCAACTACATTT-AAAATGCAGTTATAACAT-AAATGACAAAGTGGTAT  698
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  TTCAACTACATTTAAAAATGCAGTTATAACATAAAATGACAAAGTGGTAT  700

seq1  TGTGGCAACTTCAAAAGTGTAAATGCCAGGTAAGGAGACCCAGGAAGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAACTTCAAAAGTGTAAATGCCAGGTAAGGAGACCCAGGAAGACA  750

seq1  AATGCCCACAGTGCTTCTATGTCCTGACAAGTTTCTGACACATTTCTGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCACAGTGCTTCTATGTCCTGACAAGTTTCTGACACATTTCTGTA  800

seq1  CCTGGAA--GGGGAAAAAAAAAAAAAAACAGGTATGGA-TTTAGGTACTT  845
      |||||||  ||| ||||||||||||||||||||||||| |||||||||||
seq2  CCTGGAAAGGGGAAAAAAAAAAAAAAAACAGGTATGGATTTTAGGTACTT  850

seq1  CA-CACAGTTT-GAGCTTAAGT-GGAAAATCCCAAACCATTTGAAAAGTT  892
      || |||||||| |||||||||| |||||||||||||||||||| |||  |
seq2  CACCACAGTTTGGAGCTTAAGTGGGAAAATCCCAAACCATTTGGAAAAGT  900

seq1  TGACAATG-TTTTTTTTCCACTAGC-TTTCTGAAAGCCATTTGGTCATTT  940
      |||| ||| |||||||||||||||| ||||||||||||| ||||||||||
seq2  TGACTATGTTTTTTTTTCCACTAGCTTTTCTGAAAGCCA-TTGGTCATTT  949

seq1  ATTCCAGAGGTATGGAAGAATCTATCCCATTTTTTTCTTTCAATTTTCTC  990
      ||||||||||||||| |||||||||||||  |||||| | ||  ||||||
seq2  ATTCCAGAGGTATGG-AGAATCTATCCCA--TTTTTCATCCA--TTTCTC  994

seq1  CTGTTTCTATGCTGTAGGTGGGGGTCAAAACAAAGGGCACAGCAATTCTT  1040
      |||| ||||||||| | |||| |||||||||||| |||||||||||||||
seq2  CTGTATCTATGCTGGA-GTGGTGGTCAAAACAAA-GGCACAGCAATTCTT  1042