BAC Information

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BAC

Clone NameB6Ng01-113H01
Chromosome2 (Build37)
Map Location 104,713,123 - 104,866,270
singlet/doubletdoublet
Overlap geneCcdc73, Ga17, 2210415I11Rik
Upstream geneLmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4
Downstream geneLOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113H01.bB6Ng01-113H01.g
ACCDH919236DH919237
length9411,015
definitionDH919236|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H01, 5' end.DH919237|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,865,332 - 104,866,270)(104,713,123 - 104,714,149)
sequence
gaattcttttttttttttttcttttttaaatctgcattggcaattttaaa
tgtctcacttgtgcagaactgaaatttatttttaaaggcacagaaggaag
gaaaggcagctatctgagcatgaagtcacaggaaagggtgctggagagaa
accgtgggctgctctgcgtagctgtaggaaataaacaatgcagtgctgag
tgtgagctgacgctactatggtccatgtgaaggcatcgcagatgccttgt
cacttgtcagcagagtgcagatgccgtagtgtagagtcgattacactgtg
gactgaatgcccaggaggcgctcgctgccagtgactgggcgtggcaggcg
cagcaggactcactcaggacgtggacagacatttgaagcagtcaagcaca
taccttttcccactggaaatcttttatggcgctttctctgcaagtcaaca
tctgcctgcctaccaagaattataatttttaaaaaatggaatctggtcta
attatgatttgtgaataaaaaattacaaaaataaaagcagagacttctgt
ccttgaaaaaagatagaaaactatattttcctgtaataagagaatcatga
atacttcacctttatgtcttttcaaatgttatcccctcttttttttatat
tctgccataattaacattgggagatgtatacaatatggctatttcagctt
agtaaaagaatatactatttatttgctgggaaaaaatgaatgagaaaagg
ctagtttactcataataagatcgatggaaggaagggtaaataaaaaccga
gatggacttttactctaccacctttgagaccccagtttggctggcctgga
tcttgctatgtagaccaggcttggcctcagtagctgagaattctacatct
gggtccacagcagggtagggaagggagaggagggagggaaa
gaattcaccctagaagtaaatttaaccagagttagattcaatataaactc
catgaagaaaactagagaactttactgaaggaataggaggacaccctaaa
taaagggaaatatcacgtccaaggaaggttgggttcttcctaatacagcc
caattcaatatgatagggcaaaaattccatcaggaccacttgtggaaagt
tgacattaaccattctgaaagtgatctggagaaacagaagattaaaaata
accaaggctctattagaggaaaatatggcggaaggagaatcgcccgatca
gataataacaagacttacagagctatgtcgattaagatggtaagatacca
gactgatataattaatggggtagaatatagtcctggcaacagacaaggag
aattcatgactttaaaccacatttcaatagatttggcattgacttcataa
gaatttaaagggctgtttcagatatcacactggacaattcatttttcaca
tggaaagatttttaatcttcatataatatatgaaaatatactttgggcta
tttaaagacttatatgtgaacagtaaaaatgaaagatcattgaaaatagc
tgggcatggtggcaaactcctttaatctcatgctcaggctgcagaggtag
gaagacctcttgagactgaggccagcctgatctacacagtaagctgcagg
acagtcagggctgcatagtgagatctgcctcaaaacaaacaaacaaacaa
acaaacaaacaaacaaacatttttcagcaaaatacctgtgaaaaaaattg
aaaataagttccaaaagaaaaaaaaaaaaaacctcaaagcaggtaaccga
gaaacaacctttaaatgtataaaaggggtctgggagagatggctcagcgg
ttagagcactgattgctctccaaaggtcttgagttcaaatcccagcacca
catatagctcacaccatctatagggaaatctgacgcctttcagcagcaga
tgtatatgcagcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_104865332_104866270
seq2: B6Ng01-113H01.b_45_985 (reverse)

seq1  TTTCCCTCCCTCCTCTCCCTTCCCTA-CCTGCTGTGGACCCAGATGTAGA  49
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTCCCTCCCTCCTCTCCCTTCCCTACCCTGCTGTGGACCCAGATGTAGA  50

seq1  ATTCTCAGCTACTGAGGCCAAGCCTGGTCTACATAGCAAGATCCAGGCCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAGCTACTGAGGCCAAGCCTGGTCTACATAGCAAGATCCAGGCCA  100

seq1  GCCAAACTGGGGTCTCAAAGGTGGTAGAGTAAAAGTCCATCTCGGTTTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACTGGGGTCTCAAAGGTGGTAGAGTAAAAGTCCATCTCGGTTTTT  150

seq1  ATTTACCCTTCCTTCCATCGATCTTATTATGAGTAAACTAGCCTTTTCTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCCTTCCTTCCATCGATCTTATTATGAGTAAACTAGCCTTTTCTC  200

seq1  ATTCATTTTTTCCCAGCAAAT-AATAGTATATTCTTTTACTAAGCTGAAA  248
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTCATTTTTTCCCAGCAAATAAATAGTATATTCTTTTACTAAGCTGAAA  250

seq1  TAGCCATATTGTATACATCTCCCAATGTTAATTATGGCAGAATATAAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATATTGTATACATCTCCCAATGTTAATTATGGCAGAATATAAAAA  300

seq1  AAAGAGGGGATAACATTTGAAAAGACATAAAGGTGAAGTATTCATGATTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGGATAACATTTGAAAAGACATAAAGGTGAAGTATTCATGATTC  350

seq1  TCTTATTACAGGAAAATATAGTTTTCTATCTTTTTTCAAGGACAGAAGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTACAGGAAAATATAGTTTTCTATCTTTTTTCAAGGACAGAAGTC  400

seq1  TCTGCTTTTATTTTTGTAATTTTTTATTCACAAATCATAATTAGACCAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTTATTTTTGTAATTTTTTATTCACAAATCATAATTAGACCAGA  450

seq1  TTCCATTTTTTAAAAATTATAATTCTTGGTAGGCAGGCAGATGTTGACTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTTTTAAAAATTATAATTCTTGGTAGGCAGGCAGATGTTGACTT  500

seq1  GCAGAGAAAGCGCCATAAAAGATTTCCAGTGGGAAAAGGTATGTGCTTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAAAGCGCCATAAAAGATTTCCAGTGGGAAAAGGTATGTGCTTGA  550

seq1  CTGCTTCAAATGTCTGTCCACGTCCTGAGTGAGTCCTGCTGCGCCTGCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCAAATGTCTGTCCACGTCCTGAGTGAGTCCTGCTGCGCCTGCCA  600

seq1  CGCCCAGTCACTGGCAGCGAGCGCCTCCTGGGCATTCAGTCCACAGTGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAGTCACTGGCAGCGAGCGCCTCCTGGGCATTCAGTCCACAGTGTA  650

seq1  ATCGACTCTACACTACGGCATCTGCACTCTGCTGACAAGTGACAAGGCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACTCTACACTACGGCATCTGCACTCTGCTGACAAGTGACAAGGCAT  700

seq1  CTGCGATGCCTTCACATGGACCATAGTAGCGTCAGCTCACACTCAGCACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGATGCCTTCACATGGACCATAGTAGCGTCAGCTCACACTCAGCACT  750

seq1  GCATTGTTTATTTCCTACAGCTACGCAGAGCAGCCCACGGTTTCTCTCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTTTATTTCCTACAGCTACGCAGAGCAGCCCACGGTTTCTCTCCA  800

seq1  GCACCCTTTCCTGTGACTTCATGCTCAGATAGCTGCCTTTCCTTCCTTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTTTCCTGTGACTTCATGCTCAGATAGCTGCCTTTCCTTCCTTCT  850

seq1  GTGCCTTTAAAAATATATTTCAGTTCTGCACAAGTGAGACATTTAAAATT  898
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGCCTTTAAAAATAAATTTCAGTTCTGCACAAGTGAGACATTTAAAATT  900

seq1  GCCAATGCAGATTTAAAAAAGAAAAAAAAAAAAAAGAATTC  939
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGCAGATTTAAAAAAGAAAAAAAAAAAAAAGAATTC  941

seq1: chr2_104713123_104714149
seq2: B6Ng01-113H01.g_67_1081

seq1  GAATTCACCCTAGAAGTAAATTTAACCAGAGTTAGATTCAATATAAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTAGAAGTAAATTTAACCAGAGTTAGATTCAATATAAACTC  50

seq1  CATGAAGAAAACTAGAGAACTTTACTGAAGGAATAGGAGGACACCCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGAAAACTAGAGAACTTTACTGAAGGAATAGGAGGACACCCTAAA  100

seq1  TAAAGGGAAATATCACGTCCAAGGAAGGTTGGGTTCTTCCTAATACAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGAAATATCACGTCCAAGGAAGGTTGGGTTCTTCCTAATACAGCC  150

seq1  CAATTCAATATGATAGGGCAAAAATTCCATCAGGACCACTTGTGGAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAATATGATAGGGCAAAAATTCCATCAGGACCACTTGTGGAAAGT  200

seq1  TGACATTAACCATTCTGAAAGTGATCTGGAGAAACAGAAGATTAAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTAACCATTCTGAAAGTGATCTGGAGAAACAGAAGATTAAAAATA  250

seq1  ACCAAGGCTCTATTAGAGGAAAATATGGCGGAAGGAGAATCGCCCGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGCTCTATTAGAGGAAAATATGGCGGAAGGAGAATCGCCCGATCA  300

seq1  GATAATAACAAGACTTACAGAGCTATGTCGATTAAGATGGTAAGATACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAACAAGACTTACAGAGCTATGTCGATTAAGATGGTAAGATACCA  350

seq1  GACTGATATAATTAATGGGGTAGAATATAGTCCTGGCAACAGACAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATATAATTAATGGGGTAGAATATAGTCCTGGCAACAGACAAGGAG  400

seq1  AATTCATGACTTTAAACCACATTTCAATAGATTTGGCATTGACTTCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGACTTTAAACCACATTTCAATAGATTTGGCATTGACTTCATAA  450

seq1  GAATTTAAAGGGCTGTTTCAGATATCACACTGGACAATTCATTTTTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAAAGGGCTGTTTCAGATATCACACTGGACAATTCATTTTTCACA  500

seq1  TGGAAAGATTTTTAATCTTCATATAATATATGAAAATATACTTTGGGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGATTTTTAATCTTCATATAATATATGAAAATATACTTTGGGCTA  550

seq1  TTTAAAGACTTATATGTGAACAGTAAAAATGAAAGATCATTGAAAATAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGACTTATATGTGAACAGTAAAAATGAAAGATCATTGAAAATAGC  600

seq1  TGGGCATGGTGGCAAACTCCTTTAATCTCATGCTCAGGCTGCAGAGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGGTGGCAAACTCCTTTAATCTCATGCTCAGGCTGCAGAGGTAG  650

seq1  GAAGACCTCTTGAGACTGAGGCCAGCCTGATCTACACAGTAAGCTGCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCTCTTGAGACTGAGGCCAGCCTGATCTACACAGTAAGCTGCAGG  700

seq1  ACAGTCAGGGCTGCATAGTGAGATCTGCCTCAAAACAAACAAACAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGGGCTGCATAGTGAGATCTGCCTCAAAACAAACAAACAAACAA  750

seq1  ACAAACAAACAAACAAACAAACATTTTCAGCAAAATACCTGTGAAAAAAA  800
      |||||||||||||||||||    |||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAACA---TTTTTCAGCAAAATACCTGTGAAAAAAA  797

seq1  TTGAAAATAAGTTCCAAAAGAAAAAAAAAAAAAACCTCAAAGCAGGTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATAAGTTCCAAAAGAAAAAAAAAAAAAACCTCAAAGCAGGTAAC  847

seq1  CGAGAAACAACCTTTAAAATGTATAAAAGGGGTCT-GGAGAGATGGCTCA  899
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  CGAGAAACAACCTTT-AAATGTATAAAAGGGGTCTGGGAGAGATGGCTCA  896

seq1  GCGGTTAAGAGCACTGATTGCTCTTCCAAAGGTCTTGAGTTCAAATCCCA  949
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  GCGGTT-AGAGCACTGATTGCTC-TCCAAAGGTCTTGAGTTCAAATCCCA  944

seq1  GCAACCACATATTAGCTCACAACCATCTATAGGGAAATCTGACGCCCTCT  999
      || |||||||| |||||||| |||||||||||||||||||||||||   |
seq2  GC-ACCACATA-TAGCTCAC-ACCATCTATAGGGAAATCTGACGCC--TT  989

seq1  TCAGGCAGGCAGATGTATATGCAGCAGA  1027
      ||| ||| ||||||||||||||||||||
seq2  TCA-GCA-GCAGATGTATATGCAGCAGA  1015