BAC Information

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BAC

Clone NameB6Ng01-113H06
Chromosome2 (Build37)
Map Location 163,356,111 - 163,490,601
singlet/doubletdoublet
Overlap geneHnf4a, 5830472M02Rik, Serinc3, Pkig
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899
Downstream geneAda, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113H06.bB6Ng01-113H06.g
ACCDH919244DH919245
length610980
definitionDH919244|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H06, 5' end.DH919245|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,489,993 - 163,490,601)(163,356,111 - 163,357,101)
sequence
gaattcattgtgtaaaccaggctatcctcaaactcacagagatccccctt
acctctgccctgaaagtgctaggattaaaggcgtgtgccactacaccctg
ctaagatttatgtatatttttaattatggttttgtgtgtgtaagaatgac
tgcagcccctctggagtttcaagctgttaggagtctcctgatgcaggcac
cgggaatcagggagagattctctggaagagcaccatccattcttaacccc
agccctttttccagcccagatcctgagaagttttgtttccttgaaatgcc
cagcacttggtaagcagaaccaggaagataaggagagttcaaggtcattc
ctgggtacaaagagagtcctaggccagtttgagccacataatactctgtt
ccaaaaattgggtgacagggtgtggggtagggagataatatggtagcatg
gcctggtgtataaacctttaagcccattactccagaagcagaggcaggtg
gctctctgagttccagaacagcctggtctatatagtgaattcaggccagc
caaggctgcatagtgagactgtcttgaggatgaggaggatgaagatgatg
atgatgaggt
gaattcctgtttcctaagaaaagccttgttttgcatttctggaataagac
tcgggacttttcatgtgctgggtgagccgtctgatgagctacagcctcag
acccgttttgaacccacacataactgcatgctggcacctgcctgccaggt
gtaagaaggcttatcacgtttgctccacagagcactctataaaggggctc
tattgttgcgtcctatctcgtaggaggagcaaataagatctgaagagctt
gtaactcgcccagtatcagacagttcaaaggccccagcctcagcacttag
ctgaactgcctctctgtagctgatagcacctagccagggtctctctgctc
cttcagttactctccaaagggcacagcttttacagcctgtcctgtctgtc
ctaagtgtcccccctaaaattaaagcccgatgccagtgtccatatatggt
cacttcaggacagagtgcaggggaaggggcgttggcgctcttgactgagc
actgggttcttatgagtgacaacttgacagagagctggagtaactgtctc
aaaataaaaccaagggctgtgttacatcacctgcccatccaagccacctt
gggatagatgtctaacctgtggaaaggatggggcttatactcttattcaa
agatacttaggtgatggttgggttttgtttctttgctttaagtccacctc
gtgtggcccatgcctgccgccctttgcagctcagcctggcttaaactctt
gaccctcttgcctcagctaccctggtgccgggatcacaagtgtgtgccac
aatggccagatggcgtttggatcttaataggtcattgttttgcagctgac
atctttgtagcattcaagggtggccgaacaagttctactccttatctata
ggacccctatatctcccacatcaacaagcctacacaattactggtttcca
gtaaaaaacgaacctggctgggtgtgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_163489993_163490601
seq2: B6Ng01-113H06.b_47_655 (reverse)

seq1  CCTCATCATCATCATCCTCATCCTCCTCATCCTCAAGACAGTCTAACTAT  50
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  CCTCATCATCATCATCTTCATCCTCCTCATCCTCAAGACAGTCTCACTAT  50

seq1  GCAGCCTTGGCTGGCCTGAATTCACTATATAGACCAGGCTGGTCTTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  GCAGCCTTGGCTGGCCTGAATTCACTATATAGACCAGGCTGTTCTGGAAC  100

seq1  TCAGAGAGCCACCTGCCTCTGCTTCTGGAGTACTGGGCTTAAAGGTTTAT  150
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCAGAGAGCCACCTGCCTCTGCTTCTGGAGTAATGGGCTTAAAGGTTTAT  150

seq1  ACACCAGGCCATGCTACCATATTATCTCCCTACCCCACACCCTGTCACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGCCATGCTACCATATTATCTCCCTACCCCACACCCTGTCACCC  200

seq1  AATTTTTGGAACAGAGTATTATGTGGCTCAAACTGGCCTAGGACTCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGGAACAGAGTATTATGTGGCTCAAACTGGCCTAGGACTCTCTT  250

seq1  TGTACCCAGGAATGACCTTGAACTCTCCTTATCTTCCTGGTTCTGCTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCAGGAATGACCTTGAACTCTCCTTATCTTCCTGGTTCTGCTTAC  300

seq1  CAAGTGCTGGGCATTTCAAGGAAACAAAACTTCTCAGGATCTGGGCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTGGGCATTTCAAGGAAACAAAACTTCTCAGGATCTGGGCTGGA  350

seq1  AAAAGGGCTGGGGTTAAGAATGGATGGTGCTCTTCCAGAGAATCTCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGCTGGGGTTAAGAATGGATGGTGCTCTTCCAGAGAATCTCTCCC  400

seq1  TGATTCCCGGTGCCTGCATCAGGAGACTCCTAACAGCTTGAAACTCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCCGGTGCCTGCATCAGGAGACTCCTAACAGCTTGAAACTCCAGA  450

seq1  GGGGCTGCAGTCATTCTTACACACACAAAACCATAATTAAAAATATACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGCAGTCATTCTTACACACACAAAACCATAATTAAAAATATACAT  500

seq1  AAATCTTAGCAGGGTGTAGTGGCACACGCCTTTAATCCTAGCACTTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTAGCAGGGTGTAGTGGCACACGCCTTTAATCCTAGCACTTTCAG  550

seq1  GGCAGAGGTAAGGGGGATCTCTGTGAGTTTGAGGATAGCCTGGTTTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGTAAGGGGGATCTCTGTGAGTTTGAGGATAGCCTGGTTTACAC  600

seq1  AATGAATTC  609
      |||||||||
seq2  AATGAATTC  609

seq1: chr2_163356111_163357101
seq2: B6Ng01-113H06.g_70_1049

seq1  GAATTCCTGTTTCCTAAGAAAAGCCTTGTTTTGCATTTCTGGAATAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTTCCTAAGAAAAGCCTTGTTTTGCATTTCTGGAATAAGAC  50

seq1  TCGGGACTTTTCATGTGCTGGGTGAGCCGTCTGATGAGCTACAGCCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGACTTTTCATGTGCTGGGTGAGCCGTCTGATGAGCTACAGCCTCAG  100

seq1  ACCCGTTTTGAACCCACACATAACTGCATGCTGGCACCTGCCTGCCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTTTTGAACCCACACATAACTGCATGCTGGCACCTGCCTGCCAGGT  150

seq1  GTAAGAAGGCTTATCACGTTTGCTCCACAGAGCACTCTATAAAGGGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGGCTTATCACGTTTGCTCCACAGAGCACTCTATAAAGGGGCTC  200

seq1  TATTGTTGCGTCCTATCTCGTAGGAGGAGCAAATAAGATCTGAAGAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGCGTCCTATCTCGTAGGAGGAGCAAATAAGATCTGAAGAGCTT  250

seq1  GTAACTCGCCCAGTATCAGACAGTTCAAAGGCCCCAGCCTCAGCACTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCGCCCAGTATCAGACAGTTCAAAGGCCCCAGCCTCAGCACTTAG  300

seq1  CTGAACTGCCTCTCTGTAGCTGATAGCACCTAGCCAGGGTCTCTCTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTGCCTCTCTGTAGCTGATAGCACCTAGCCAGGGTCTCTCTGCTC  350

seq1  CTTCAGTTACTCTCCAAAGGGCACAGCTTTTACAGCCTGTCCTGTCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTACTCTCCAAAGGGCACAGCTTTTACAGCCTGTCCTGTCTGTC  400

seq1  CTAAGTGTCCCCCCTAAAATTAAAGCCCGATGCCAGTGTCCATATATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGTCCCCCCTAAAATTAAAGCCCGATGCCAGTGTCCATATATGGT  450

seq1  CACTTCAGGACAGAGTGCAGGGGAAGGGGCGTTGGCGCTCTTGACTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGGACAGAGTGCAGGGGAAGGGGCGTTGGCGCTCTTGACTGAGC  500

seq1  ACTGGGTTCTTATGAGTGACAACTTGACAGAGAGCTGGAGTAACTGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTTCTTATGAGTGACAACTTGACAGAGAGCTGGAGTAACTGTCTC  550

seq1  AAAATAAAACCAAGGGCTGTGTTACATCACCTGCCCATCCAAGCCACC-T  599
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAATAAAACCAAGGGCTGTGTTACATCACCTGCCCATCCAAGCCACCTT  600

seq1  GGGATAGATGTCTAACCTGTGGAAAGGATGGGGCTTATACTCTTATTCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGATGTCTAACCTGTGGAAAGGATGGGGCTTATACTCTTATTCAA  650

seq1  AGATACTTAGGTGATGGTTGGGTTTTGTTTCTTTGCTTTAAGTCCACCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTAGGTGATGGTTGGGTTTTGTTTCTTTGCTTTAAGTCCACCTC  700

seq1  GTGTGGCCCATGCCTGCCGCCCTTTGCAGCTCAGCCTGGCTTAGAACTCT  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGTGGCCCATGCCTGCCGCCCTTTGCAGCTCAGCCTGGCTTA-AACTCT  749

seq1  TGACCCTCTTGCCTCAGCTACCCTGGTGCCGGGATCACAGGTGTGTGCCA  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGACCCTCTTGCCTCAGCTACCCTGGTGCCGGGATCACAAGTGTGTGCCA  799

seq1  CAATGGCCAGATGGCGTTTGGATCTTAATAGGGTCATTGTTTTGCAGCTG  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAATGGCCAGATGGCGTTTGGATCTTAATA-GGTCATTGTTTTGCAGCTG  848

seq1  ACATCTTTGTAGCATTCACAGTGTGCCAGACACAGTTCTAGCCCTTTATC  899
      |||||||||||||||||| || ||| | ||   ||||||| | | |||||
seq2  ACATCTTTGTAGCATTCA-AGGGTGGCCGAACAAGTTCTA-CTCCTTATC  896

seq1  TATAGGAACACCAATAATCTCCACCATCGACCATAGCCTACACATTTACT  949
      |||||| || || || ||||||  |||| ||   |||||||||| |||||
seq2  TATAGG-ACCCCTAT-ATCTCCCACATCAAC--AAGCCTACACAATTACT  942

seq1  GTTTCCAAGTAAGAAAACAGACCCTGGGCTGGGGTGTGGGGA  991
      | || | ||||| ||||| || ||| |||| |||||||||||
seq2  GGTTTCCAGTAA-AAAAC-GAACCT-GGCT-GGGTGTGGGGA  980