BAC Information

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BAC

Clone NameB6Ng01-113M20
Chromosome6 (Build37)2 (Build37)
Map Location 122,182,614 - 122,183,67443,922,255 - 43,922,314
singlet/doubletsingletsinglet
Overlap geneMug-ps1
Upstream geneUsp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530, Mug1, Mug4, Mug2
Downstream geneKlrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107, LOC100043805, Nanog, LOC100038891, Slc2a3, LOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1, Necap1, EG384482, Clec4a1, Clec4a3, Clec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113M20.bB6Ng01-113M20.g
ACCDH919502DH919503
length1,077704
definitionDH919502|Mus musculus domesticus DNA, BAC clone: B6Ng01-113M20, 5' end.DH919503|Mus musculus domesticus DNA, BAC clone: B6Ng01-113M20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(122,182,614 - 122,183,674)(43,922,255 - 43,922,314)
sequence
gaattcaatgggacatagttgtgtagtgtaaatgtagctgaattttcaat
ttcttcttgactgttaacactataaccgtgatgcattgaatcactcattt
tggaggagactgggtaacgtctttgtcataggtgaaaccttacctagagt
agttcaagttggaaggaaccacaatgcatatttccttgggttggatatta
gatagttagtgaatgcctacagatacaatgtgtcacctaggaggaatgga
gatgcataatatgatcctaggcaacagatctcgtgacaatgagaatcatt
ccagacaagagctgaatgatgtctacattattggcagagatatttttgca
atgttttttctttcttacgatctgtatctttaacccaatgttttaatagg
ttttcgtttggataaaaactgcaagaggtatatgtacaagctcttgcctc
agaaataggaagtttattactcaggttcatagcattggcttgggtttgta
ctggcaagaaatgtaggatttaaagttgatgatggagggtctgtactctg
tactttttcaaggacaagtatacacactgatttagtcagggcttcaccta
agtattttccaggtgatttctaagcctagaaaatcattcccaatttttaa
attcacatacatacacagagtttaatttctatacatacttccctgtgata
gctacaacctcttaccttgattgtggtcttttatatttgccttcaagaac
taagtatttttctagtgtttaagttcttcacccgttactttaacagctac
agggatagtttcccaattattccatttgtctagagtagacacagttgcct
caagtcctcttgctttatagaaacgtgtggaagatattccaatttccttt
tcaaatcattatgaggaaaattaatacagtccagtcagaataagggtttt
tattttatgttagcacagattataaaaaataaactttaatatttgggaat
ataaaataatgataaaaatagggtttcatgggttttacgttaaatggccg
agggtaccaggaataaaactggcatgg
gaattctcacctgaggaataccaagtggcagaaaatcacctgaaaaaatg
ttcagcatgcttaatcatcagggaaatgcaaatcaaaacaatcctgagat
ttcacctcacaccagtcagaatggctaagataaaaaattcaggtgacagt
agatgctggcgtagatgtggagaaagaggaacacttctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtagtaccggaggatccagcaataccactcctaggc
atatatccagaagatgtcccaaccagtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggagagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
agaactcaaatcatatgtactcactgataagtggatattagcccagaaac
ttagtataacgagatataaggcacaatttgcaaaacacatgaaactgaag
aagaacgaagaccaaagtgtggacactttgtcccttcttagaattggaaa
caat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_122182614_122183674
seq2: B6Ng01-113M20.b_49_1125 (reverse)

seq1  CCATGCAGGTTTTATTCCT-GTA-CCTCTGCAATTTAACGTAAAA-CCAT  47
      ||||||  ||||||||||| ||| |||| || ||||||||||||| ||||
seq2  CCATGCCAGTTTTATTCCTGGTACCCTCGGCCATTTAACGTAAAACCCAT  50

seq1  GAAACCCTATTTTTATCATTA-TTTATATT-CCAAATATTAAAGTTTA-T  94
      ||||||||||||||||||||| |||||||| ||||||||||||||||| |
seq2  GAAACCCTATTTTTATCATTATTTTATATTCCCAAATATTAAAGTTTATT  100

seq1  TTTTAT-ATCTGTGCTAACATAAAATAAAA--CCTTATTCTGACTGGACT  141
      |||||| |||||||||||||||||||||||  ||||||||||||||||||
seq2  TTTTATAATCTGTGCTAACATAAAATAAAAACCCTTATTCTGACTGGACT  150

seq1  GTATTAATTTTCCTCATAATGATTTG-AAAGGAAATTGGAATATCTT-CA  189
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  GTATTAATTTTCCTCATAATGATTTGAAAAGGAAATTGGAATATCTTCCA  200

seq1  CACGTTTCTAT-AAGCAAGAGGACCTGAGGC-ACTGTGTCTACTCTAGAC  237
      ||||||||||| |||||||||||| |||||| ||||||||||||||||||
seq2  CACGTTTCTATAAAGCAAGAGGACTTGAGGCAACTGTGTCTACTCTAGAC  250

seq1  -AATGGAATAATTGGGGAACTATCCCTGTAGCTGTTAAAGTAACGGGTGA  286
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAATGGAATAATTGGGAAACTATCCCTGTAGCTGTTAAAGTAACGGGTGA  300

seq1  AGAACTTAAAACACTAG-AAAATACTTAGTTCTTGAAGGCAAATAT-AAA  334
      ||||||| ||||||||| |||||||||||||||||||||||||||| |||
seq2  AGAACTT-AAACACTAGAAAAATACTTAGTTCTTGAAGGCAAATATAAAA  349

seq1  GACCACAATC-AGGTAAGAGGTTGTAGCTATCACAGGGAAGTATGTATAG  383
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GACCACAATCAAGGTAAGAGGTTGTAGCTATCACAGGGAAGTATGTATAG  399

seq1  AAATTAAACTCTGTGTATGTATGTGAATTTAAAAATTGGGAATGATTTTC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAACTCTGTGTATGTATGTGAATTTAAAAATTGGGAATGATTTTC  449

seq1  TAGGCTTAGAAATCACCTGGAAAATACTTAGGTGAAGCCCTGACTAAATC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTAGAAATCACCTGGAAAATACTTAGGTGAAGCCCTGACTAAATC  499

seq1  AGTGTGTATACTTGTCCTTGAAAAAGTACAGAGTACAGACCCTCCATCAT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTATACTTGTCCTTGAAAAAGTACAGAGTACAGACCCTCCATCAT  549

seq1  CAACTTTAAATCCTACATTTCTTGCCAGTACAAACCCAAGCCAATGCTAT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTAAATCCTACATTTCTTGCCAGTACAAACCCAAGCCAATGCTAT  599

seq1  GAACCTGAGTAATAAACTTCCTATTTCTGAGGCAAGAGCTTGTACATATA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGAGTAATAAACTTCCTATTTCTGAGGCAAGAGCTTGTACATATA  649

seq1  CCTCTTGCAGTTTTTATCCAAACGAAAACCTATTAAAACATTGGGTTAAA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCAGTTTTTATCCAAACGAAAACCTATTAAAACATTGGGTTAAA  699

seq1  GATACAGATCGTAAGAAAGAAAAAACATTGCAAAAATATCTCTGCCAATA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGATCGTAAGAAAGAAAAAACATTGCAAAAATATCTCTGCCAATA  749

seq1  ATGTAGACATCATTCAGCTCTTGTCTGGAATGATTCTCATTGTCACGAGA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACATCATTCAGCTCTTGTCTGGAATGATTCTCATTGTCACGAGA  799

seq1  TCTGTTGCCTAGGATCATATTATGCATCTCCATTCCTCCTAGGTGACACA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGCCTAGGATCATATTATGCATCTCCATTCCTCCTAGGTGACACA  849

seq1  TTGTATCTGTAGGCATTCACTAACTATCTAATATCCAACCCAAGGAAATA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTGTAGGCATTCACTAACTATCTAATATCCAACCCAAGGAAATA  899

seq1  TGCATTGTGGTTCCTTCCAACTTGAACTACTCTAGGTAAGGTTTCACCTA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTGGTTCCTTCCAACTTGAACTACTCTAGGTAAGGTTTCACCTA  949

seq1  TGACAAAGACGTTACCCAGTCTCCTCCAAAATGAGTGATTCAATGCATCA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGACGTTACCCAGTCTCCTCCAAAATGAGTGATTCAATGCATCA  999

seq1  CGGTTATAGTGTTAACAGTCAAGAAGAAATTGAAAATTCAGCTACATTTA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTATAGTGTTAACAGTCAAGAAGAAATTGAAAATTCAGCTACATTTA  1049

seq1  CACTACACAACTATGTCCCATTGAATTC  1061
      ||||||||||||||||||||||||||||
seq2  CACTACACAACTATGTCCCATTGAATTC  1077

seq1: chr2_43922255_43922314
seq2: B6Ng01-113M20.g_715_774 (reverse)

seq1  ATTGTTTCCAATTCTAAGAAGGGGCAAAGTGTCGACACTTTGGTCTTCGT  50
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  ATTGTTTCCAATTCTAAGAAGGGACAAAGTGTCCACACTTTGGTCTTCGT  50

seq1  TCTTCTTCAG  60
      ||||||||||
seq2  TCTTCTTCAG  60