BAC Information

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BAC

Clone NameB6Ng01-113N05
Chromosome2 (Build37)13 (Build37)
Map Location 21,159,546 - 21,159,59697,144,423 - 97,145,182
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEtl4, Arhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1
Downstream geneGpr158, LOC637235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113N05.bB6Ng01-113N05.g
ACCDH919518DH919519
length797763
definitionDH919518|Mus musculus domesticus DNA, BAC clone: B6Ng01-113N05, 5' end.DH919519|Mus musculus domesticus DNA, BAC clone: B6Ng01-113N05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,159,546 - 21,159,596)(97,144,423 - 97,145,182)
sequence
gaattctctggtggaatttttgggatcacttatatatactatcatatcat
ctgcaaatactgatattttgacttcttcctttctaaattgtatccatttg
atatcctactgttgtctaattgctctggctacgacttcaagtattacatt
gaataggtacggagagagtgggcagccttgtctagtccatgatttaagtg
gaattgctttaagtttctcaccacttagtttgatgttggctactggttta
ctgtagatttcttttattatgtttgtttaggtatgggcctttaattcctg
atatttccaagacttttatcttgaatgggtgttggattttgtcaaatgct
ttctcagcatctgacgagatgatcatgtgatttttgtctttgagtttgtt
tatatagtggattacattgatggatttccgtatattaaaccatccctgca
tccctggaatgaaacctacttcgtcatgatggacaatcattttgatgtgt
tcttggattcagtttgcaaggattttattgagtatttttacatcgatatt
cataagggaaattggtctgaagttctctttctttgttggacctttgtgtg
gttttaggtatcagagtgatttgtggcttcatagaatgaattgggtagag
taccttctgcttctattttgtggaataatttgaggagagttggaatttaa
gtcttctttgaaggtctgatagaactctgcattaaacccatcaggtcctg
ggctttttttttaggggggggggactatttattattgtttgtttttc
gaattctttgtgtgatatggtttttcatgtagatatccttattgtctgag
attgaagttctagcttaggtattactgagtttgagatggaaagaaatgag
agcaggtcacaaattgcactgttctgctattgacatatttctccacgaag
tcgctgcagcacttagccaacgccagcactccacactgcggttggtcttc
tgattgttggaagagaaagacgggaggcattagtagagaaaaaccctctc
ctgtagggcttacggtgtttttttttaattttatttttattatggacatt
tatgatgcccggtatccttgaagagtcttctagtgcttagaaaaatctcc
atttgtgcttcttggttccccagcttgcaggaggaaacttgctttcctgg
cttcccttgcagcccggccatgggatacttgtatgtatctctgattcaaa
tgtgggcgatgggagagaagaggacagagatgttatctgtgatgggggcc
tctgtaaggagtaccagagccagggtctttggcatctgctcctgagcatc
tccgtatgagctgtagcacttgcacaagtcctgtttagaaggtgaggcta
tcagcagggtcgtttaactgtagtgcatcctgaagcgagatcagagattg
ttcccgactactcagcatccctgtctgattctcaggggttctgggagcct
ctgctgaactttaatgagtccttttttttttttttgcagggggcgtgggg
gtgggggggtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_21159546_21159596
seq2: B6Ng01-113N05.b_803_846 (reverse)

seq1  GAAAAACAATATACAAAACAATAGCAATAGTCCCCCCCCCCCAAAAAAAA  50
      |||||||||     | || ||||  |||||||||||||||| ||||||||
seq2  GAAAAACAA-----ACAATAATA--AATAGTCCCCCCCCCCTAAAAAAAA  43

seq1  A  51
      |
seq2  A  44

seq1: chr13_97144423_97145182
seq2: B6Ng01-113N05.g_71_833 (reverse)

seq1  CCTAACCCCCCACCCCCACG-CCCCTGC--AAAAAAAAAAAAGGACTCAT  47
      |||| ||||||||||||||| |||||||  ||||||||||||||||||||
seq2  CCTACCCCCCCACCCCCACGCCCCCTGCAAAAAAAAAAAAAAGGACTCAT  50

seq1  TAAAGTTCAGCAGAGGCTCCCAGAACCCCTGAGAATCAGACAGGGATGCT  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTCAGCAGAGGCTCCCAGAACCCCTGAGAATCAGACAGGGATGCT  100

seq1  GAGTAGTCGGGAACAATCTCTGATCTCGCTTCAGGATGCACTACAGTTAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTCGGGAACAATCTCTGATCTCGCTTCAGGATGCACTACAGTTAA  150

seq1  ACGACCCTGCTGATAGCCTCACCTTCTAAACAGGACTTGTGCAAGTGCTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCCTGCTGATAGCCTCACCTTCTAAACAGGACTTGTGCAAGTGCTA  200

seq1  CAGCTCATACGGAGATGCTCAGGAGCAGATGCCAAAGACCCTGGCTCTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATACGGAGATGCTCAGGAGCAGATGCCAAAGACCCTGGCTCTGG  250

seq1  TACTCCTTACAGAGGCCCCCATCACAGATAACATCTCTGTCCTCTTCTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTTACAGAGGCCCCCATCACAGATAACATCTCTGTCCTCTTCTCT  300

seq1  CCCATCGCCCACATTTGAATCAGAGATACATACAAGTATCCCATGGCCGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCGCCCACATTTGAATCAGAGATACATACAAGTATCCCATGGCCGG  350

seq1  GCTGCAAGGGAAGCCAGGAAAGCAAGTTTCCTCCTGCAAGCTGGGGAACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAGGGAAGCCAGGAAAGCAAGTTTCCTCCTGCAAGCTGGGGAACC  400

seq1  AAGAAGCACAAATGGAGATTTTTCTAAGCACTAGAAGACTCTTCAAGGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCACAAATGGAGATTTTTCTAAGCACTAGAAGACTCTTCAAGGAT  450

seq1  ACCGGGCATCATAAATGTCCATAATAAAAATAAAATTAAAAAAAAACACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGCATCATAAATGTCCATAATAAAAATAAAATTAAAAAAAAACACC  500

seq1  GTAAGCCCTACAGGAGAGGGTTTTTCTCTACTAATGCCTCCCGTCTTTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCCTACAGGAGAGGGTTTTTCTCTACTAATGCCTCCCGTCTTTCT  550

seq1  CTTCCAACAATCAGAAGACCAACCGCAGTGTGGAGTGCTGGCGTTGGCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAACAATCAGAAGACCAACCGCAGTGTGGAGTGCTGGCGTTGGCTA  600

seq1  AGTGCTGCAGCGACTTCGTGGAGAAATATGTCAATAGCAGAACAGTGCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGCAGCGACTTCGTGGAGAAATATGTCAATAGCAGAACAGTGCAA  650

seq1  TTTGTGACCTGCTCTCATTTCTTTCCATCTCAAACTCAGTAATACCTAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACCTGCTCTCATTTCTTTCCATCTCAAACTCAGTAATACCTAAG  700

seq1  CTAGAACTTCAATCTCAGACAATAAGGATATCTACATGAAAAACCATATC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTTCAATCTCAGACAATAAGGATATCTACATGAAAAACCATATC  750

seq1  ACACAAAGAATTC  760
      |||||||||||||
seq2  ACACAAAGAATTC  763