BAC Information

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BAC

Clone NameB6Ng01-114B22
Chromosome2 (Build37)
Map Location 145,525,227 - 145,734,297
singlet/doubletdoublet
Overlap geneLOC100043810, Rin2, Nat5
Upstream geneDtd1, 1700010M22Rik, Slc24a3, LOC627312, OTTMUSG00000015643, LOC433482
Downstream geneCrnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik, LOC668918, Gm114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114B22.bB6Ng01-114B22.g
ACCDH919725DH919726
length1,151693
definitionDH919725|Mus musculus domesticus DNA, BAC clone: B6Ng01-114B22, 5' end.DH919726|Mus musculus domesticus DNA, BAC clone: B6Ng01-114B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,525,227 - 145,526,367)(145,733,606 - 145,734,297)
sequence
gaattctacaaacttcagatcccctgtttgagtccagctaggagcccagg
tgagacctggcaggctcagaagcctgtgggagcattgagtggaggacacg
agtgtgcagaggctgggcgagacagcacaggctacaccaactgtcaaaga
tgagtctcatcctgaggaaggggactctgggagagatggagggtgctagg
aacacttgcctctggaaactttgtgatgttgagaaagtcagcaaaagaga
taaaatggaggatcctgaagaaagcaaagggcatcccaacagagggcaga
cgaccctgagagcagacccaactgataaagaaatgacaccattttaacac
tagagggcgtgcttgaatcaggaaacccagtcagccacccaggcgctgcc
cttgcttgcaccggatctaactaatggtcagaaaagaaatgtggtgcaaa
cccaggaagcagaagtgtactaagcagagctacagcctgaagaaaataga
gtttgaaagtcaaagcatttcccatcataaatgttgttatcatctcttag
gtgtaaacacacacacacaatatcaatctttcccccccccccccccaagg
gaggctacagagagaactctgtggttaaattctctttcagaggatccagg
tttgatttcccagcacccagggagcagtttcacaaccatctgtaattcca
gtttccagggcgtgtaaggtcctccccaagtgtccaacatgcaagtgctg
cacagacatacatgcaggcaaaacactcagacacataaaatggtgatgat
aataatggacttagaaaggaaaaatgagagtggatttatagtccttcttg
ttatgtgggacttttgcagttgttgtttaaccttgggcttgtggggccga
ggagtagtttttccaatatgaagttgaaacagcagccaccatccagccct
aggtgttctctgtccactggcccaatcaagatgaaaagtcctagcttatt
tgccctcaagcctatggggcttttgtgtctacttgtacttgctaggatgg
aagagatttgtcacaatttcctcctgagaataattgaaaagatagatcag
ggatgtccttctgctcctggttcatcttcattacatctgggaacctgcat
c
gaattcctgagcccaacttaaaagataggggctgggcatggtggttcact
cctttaatcccagcattcaggaggcagaggaaagccatccctgtcaacaa
tggcaagtttcagggcagccaggactacacagagaagccctgtctcaaaa
aactgaccaaattaaaaaaaaaaaaaaaacaacaacacatttcttctata
actctgaaagccaaagaagatggtttaaatgacccagggccacatgtgca
ccaataaagagatctgtacttcactgaactgcctacctctttataggcag
aattatagctcactccatcagactcttgcagatatgaggaccagttaggt
gtgtctcatatgtacagccattccaactaacctgctccccatttcatcat
ccctgcccagctctgggccttcgcctacgcctacaatttccccttctcaa
agtggaggggagtactcccccgcctccactttttctcctccttgtagaaa
tcctcccagaccccatgtactttcaactgaagttcacttacctccacact
gctccctcctgtcaactaagccctggtgctatggggaactacccagcatg
tcccaccacacaagcccaaattcagcattccttttttttttttttttttt
ttttttgggttttcaaaaaagggtttctccgtaaaacccctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_145525227_145526367
seq2: B6Ng01-114B22.b_47_1197

seq1  GAATTCTACAAACTTCAGATCCCCTGTTTGAGTCCAGCTAGGAGCCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAAACTTCAGATCCCCTGTTTGAGTCCAGCTAGGAGCCCAGG  50

seq1  TGAGACCTGGCAGGCTCAGAAGCCTGTGGGAGCATTGAGTGGAGGACACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTGGCAGGCTCAGAAGCCTGTGGGAGCATTGAGTGGAGGACACG  100

seq1  AGTGTGCAGAGGCTGGGCGAGACAGCACAGGCTACACCAACTGTCAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCAGAGGCTGGGCGAGACAGCACAGGCTACACCAACTGTCAAAGA  150

seq1  TGAGTCTCATCCTGAGGAAGGGGACTCTGGGAGAGATGGAGGGTGCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTCATCCTGAGGAAGGGGACTCTGGGAGAGATGGAGGGTGCTAGG  200

seq1  AACACTTGCCTCTGGAAACTTTGTGATGTTGAGAAAGTCAGCAAAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGCCTCTGGAAACTTTGTGATGTTGAGAAAGTCAGCAAAAGAGA  250

seq1  TAAAATGGAGGATCCTGAAGAAAGCAAAGGGCATCCCAACAGAGGGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGAGGATCCTGAAGAAAGCAAAGGGCATCCCAACAGAGGGCAGA  300

seq1  CGACCCTGAGAGCAGACCCAACTGATAAAGAAATGACACCATTTTAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCCTGAGAGCAGACCCAACTGATAAAGAAATGACACCATTTTAACAC  350

seq1  TAGAGGGCGTGCTTGAATCAGGAAACCCAGTCAGCCACCCAGGCGCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGCGTGCTTGAATCAGGAAACCCAGTCAGCCACCCAGGCGCTGCC  400

seq1  CTTGCTTGCACCGGATCTAACTAATGGTCAGAAAAGAAATGTGGTGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGCACCGGATCTAACTAATGGTCAGAAAAGAAATGTGGTGCAAA  450

seq1  CCCAGGAAGCAGAAGTGTACTAAGCAGAGCTACAGCCTGAAGAAAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAGCAGAAGTGTACTAAGCAGAGCTACAGCCTGAAGAAAATAGA  500

seq1  GTTTGAAAGTCAAAGCATTTCCCATCATAAATGTTGTTATCATCTCTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAGTCAAAGCATTTCCCATCATAAATGTTGTTATCATCTCTTAG  550

seq1  GTGTAAACACACACACACAATATCAATCTTTCCCCCCCCCCCCCCCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAACACACACACACAATATCAATCTTTCCCCCCCCCCCCCCCAAGG  600

seq1  GAGGCTACAGAGAGAACTCTGTGGTTAAATTCTCTTTCAGAGGATCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTACAGAGAGAACTCTGTGGTTAAATTCTCTTTCAGAGGATCCAGG  650

seq1  TTTGA-TTCCCAGCACCCAGGGAGCAG-TTCACAACCATCTGTAATTCCA  698
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTGATTTCCCAGCACCCAGGGAGCAGTTTCACAACCATCTGTAATTCCA  700

seq1  G-TTCCAGGGCGTGTAAGGTCCTCCCCAAGTGTCCAACATGCAAGTGCTG  747
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGGGCGTGTAAGGTCCTCCCCAAGTGTCCAACATGCAAGTGCTG  750

seq1  CACAGACATACATGCAGGCAAAACACTCAGACACATAAAATGGTGATGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACATACATGCAGGCAAAACACTCAGACACATAAAATGGTGATGAT  800

seq1  AATAATGGACTTAGAAAGGAAAAATGAGAGTGGATTTATAGTCC-TCTTG  846
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATAATGGACTTAGAAAGGAAAAATGAGAGTGGATTTATAGTCCTTCTTG  850

seq1  -TATGTGGGAC-TTTGCAGTTGTTG-TTAACCTTGGGC-TGTGGGGCCGA  892
       |||||||||| ||||||||||||| |||||||||||| |||||||||||
seq2  TTATGTGGGACTTTTGCAGTTGTTGTTTAACCTTGGGCTTGTGGGGCCGA  900

seq1  -GAGTAG-TTTTCCAATA--GAGTTG-AACAGCAGCCACCATCCAG-CCT  936
       |||||| ||||||||||   ||||| ||||||||||||||||||| |||
seq2  GGAGTAGTTTTTCCAATATGAAGTTGAAACAGCAGCCACCATCCAGCCCT  950

seq1  AGGTGTTCTCCTGGCCACTGGCCC-ATCAAGATGAAAAGTCTTAGC-TAT  984
      ||||||||| ||| |||||||||| |||||||||||||||| |||| |||
seq2  AGGTGTTCT-CTGTCCACTGGCCCAATCAAGATGAAAAGTCCTAGCTTAT  999

seq1  TGCCCCTCAAGCCTATGGGGC-TTTGTGTCTACTTGTACCTGCTAGGATG  1033
      |  |||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  TTGCCCTCAAGCCTATGGGGCTTTTGTGTCTACTTGTACTTGCTAGGATG  1049

seq1  GAAGAGGAATTTTGCCACA--TTTCTTCTGAGGATAAATTGAAAAGGAAA  1081
      ||||||    |||| ||||  || || ||||| || ||||||||||  | 
seq2  GAAGAG---ATTTGTCACAATTTCCTCCTGAGAAT-AATTGAAAAG--AT  1093

seq1  AGATCCAGTGATGTCCCTTCTGCTTCCTGGTTCATTCTTC-TTACATCTG  1130
      |||| ||| ||||| |||||||| |||||||||| ||||| |||||||||
seq2  AGAT-CAGGGATGT-CCTTCTGC-TCCTGGTTCA-TCTTCATTACATCTG  1139

seq1  TG-AGCTGCATC  1141
       | | |||||||
seq2  GGAACCTGCATC  1151

seq1: chr2_145733606_145734297
seq2: B6Ng01-114B22.g_69_761 (reverse)

seq1  CCA-GGGCTTTACAGAGAAACCCTATTTTGAAAAACCAAAAAAAAAAAAA  49
      ||| ||| ||||| |||||||||| ||||||||| |||||||||||||||
seq2  CCAGGGGTTTTACGGAGAAACCCTTTTTTGAAAACCCAAAAAAAAAAAAA  50

seq1  AAAAAAAAAAAAGGAATGCTGAATTTGGGCTTGTGTGGTGGGACATGCTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGGAATGCTGAATTTGGGCTTGTGTGGTGGGACATGCTG  100

seq1  GGTAGTTCCCCATAGCACCAGGGCTTAGTTGACAGGAGGGAGCAGTGTGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTCCCCATAGCACCAGGGCTTAGTTGACAGGAGGGAGCAGTGTGG  150

seq1  AGGTAAGTGAACTTCAGTTGAAAGTACATGGGGTCTGGGAGGATTTCTAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGTGAACTTCAGTTGAAAGTACATGGGGTCTGGGAGGATTTCTAC  200

seq1  AAGGAGGAGAAAAAGTGGAGGCGGGGGAGTACTCCCCTCCACTTTGAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAGAAAAAGTGGAGGCGGGGGAGTACTCCCCTCCACTTTGAGAA  250

seq1  GGGGAAATTGTAGGCGTAGGCGAAGGCCCAGAGCTGGGCAGGGATGATGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATTGTAGGCGTAGGCGAAGGCCCAGAGCTGGGCAGGGATGATGA  300

seq1  AATGGGGAGCAGGTTAGTTGGAATGGCTGTACATATGAGACACACCTAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGAGCAGGTTAGTTGGAATGGCTGTACATATGAGACACACCTAAC  350

seq1  TGGTCCTCATATCTGCAAGAGTCTGATGGAGTGAGCTATAATTCTGCCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTCATATCTGCAAGAGTCTGATGGAGTGAGCTATAATTCTGCCTA  400

seq1  TAAAGAGGTAGGCAGTTCAGTGAAGTACAGATCTCTTTATTGGTGCACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGGTAGGCAGTTCAGTGAAGTACAGATCTCTTTATTGGTGCACAT  450

seq1  GTGGCCCTGGGTCATTTAAACCATCTTCTTTGGCTTTCAGAGTTATAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCTGGGTCATTTAAACCATCTTCTTTGGCTTTCAGAGTTATAGAA  500

seq1  GAAATGTGTTGTTGTTTTTTTTTTTTTTTTAATTTGGTCAGTTTTTTGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGTTGTTGTTTTTTTTTTTTTTTTAATTTGGTCAGTTTTTTGAG  550

seq1  ACAGGGCTTCTCTGTGTAGTCCTGGCTGCCCTGAAACTTGCCATTGTTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCTTCTCTGTGTAGTCCTGGCTGCCCTGAAACTTGCCATTGTTGA  600

seq1  CAGGGATGGCTTTCCTCTGCCTCCTGAATGCTGGGATTAAAGGAGTGAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGGCTTTCCTCTGCCTCCTGAATGCTGGGATTAAAGGAGTGAAC  650

seq1  CACCATGCCCAGCCCCTATCTTTTAAGTTGGGCTCAGGAATTC  692
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCCCAGCCCCTATCTTTTAAGTTGGGCTCAGGAATTC  693