BAC Information

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BAC

Clone NameB6Ng01-114F13
Chromosome2 (Build37)
Map Location 162,151,846 - 162,281,776
singlet/doubletdoublet
Overlap genePtprt
Upstream geneLOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114F13.bB6Ng01-114F13.g
ACCDH919887DH919888
length8811,179
definitionDH919887|Mus musculus domesticus DNA, BAC clone: B6Ng01-114F13, 5' end.DH919888|Mus musculus domesticus DNA, BAC clone: B6Ng01-114F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,151,846 - 162,152,721)(162,280,594 - 162,281,776)
sequence
gaattcttaacagactccaggttagagaggacagtgatgagaatgctctt
cttttgacaggttctgtgaccttcagtcaagggacatagttggcctaagg
tgaggtaaagaaggggtttatagaataagttccaataacatactttcctg
ctcatctccagtcccctgtcatatgaaagcaaggttgactcataaagtga
acatgacagagaaggacagagggaattcagagggtcacgtggacagcagc
agcacagaatagaaagcatttagggtttaagtaggcatcttgacatgttt
gtgccagaaatcaccttggatatgtaggtttgaccctggtcaccagaagg
ctaactggactttgaagacagatgccataatctagaagctcagtcatttc
atgcacctactacattcatctagagaatgcgtgtagattttagaggcaat
gacttagggtaaaaagaggccttgagtgtttctatcctcagaataaaaaa
aataaagtctttctagcagccaaaatgatccatggaattggtaaagtaaa
agagacaccgttcctgaatagcaaatctgactttttcagtcacaaccagc
atcgcatccttccaaaaatgttctctcttgctatttctgaattcagagat
ccacaggaaatatatctcatttgttttcataaaacagtttcctggagtga
ccacatgggatggtcgcatgttctgagtcatacattgttagtgatatcat
ccttgtgaagacatcacagagtacatctacgtgaaccaggatgtctatta
tcattaaagcagtatatcttagggagatcactgttatgtatatatgacct
gtcattggccaaaacatcatttatgcaatac
gaattctcttttagatgaaatatttatgttttttttaaggaaacataagc
atatataacttaatagaaggaaagaaagctaagatttatgacttctgttc
cctggatggtagattatatgtaactgcttggaaggaacttgcaacctatt
ttgcatatttgctaaagcaaatacttttcagttagggagtctaataaagg
ataaaataaaaacaaatgttagtgaaagtgaaagagtaagcttgggctag
acgcatctgcgtggaaagaacccgagacgtcctagacgagcaaagacatt
gaccttgttggcacttttgaatctatttttgaaatgcttgcaagtacagg
ttcttgcaagattgttctgaggatgaattcagagtacaagaaaagagtgg
gactgaaaagactcagtaaatattgctagaatcttctgttcccttcttag
tcttgtataaaatgactgatttggatctgctgatcttaaatggccttcaa
agttgctcctgcaattttctctttattctatgtgaccacagcctcttgtt
tgattctcccaaaatgaaggctatcaggctggctgtcaaggctaaatcag
ttgctatgataaaatgtttgaatgtgtatatttatattacatcatatata
accttctcaaaagctacgtataggtatttcctttctgtctcttctttctt
accattgtgacagagtattctaaaattcccagaggcggtaaagttataat
caaacagttatgtgcataccttgtcagtggacatacaactcatgtagctt
ttgttaggaaggctggcaaagtagctcagtgagtaaatacacgtgcttcc
aagcctaaaaacctcacttcaatccctgagacttaactatcacaggaata
gaggcatgcgtgtggttacagaacacatacatacatcaacataatgtata
catacacacaataaataatgattattttcaaaaaaattgaaagcatcttc
atgtattttcactcaacatctcattgaaagtaatatctagaaggtaaaga
agatggtgtggtcatagtttctcaacatgagttcttagcttctgtccttt
ctagggttttggggataatccagaaacctaaatggcttgtatttctgaaa
ccttgtaatttagagcctcttgggcaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_162151846_162152721
seq2: B6Ng01-114F13.b_44_924

seq1  GAATTCTTAACAGACTCCAGGTTAGAGAGGACAGTGATGAGAATGCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACAGACTCCAGGTTAGAGAGGACAGTGATGAGAATGCTCTT  50

seq1  CTTTTGACAGGTTCTGTGACCTTCAGTCAAGGGACATAGTTGGCCTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGACAGGTTCTGTGACCTTCAGTCAAGGGACATAGTTGGCCTAAGG  100

seq1  TGAGGTAAAGAAGGGGTTTATAGAATAAGTTCCAATAACATACTTTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAAAGAAGGGGTTTATAGAATAAGTTCCAATAACATACTTTCCTG  150

seq1  CTCATCTCCAGTCCCCTGTCATATGAAAGCAAGGTTGACTCATAAAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCCAGTCCCCTGTCATATGAAAGCAAGGTTGACTCATAAAGTGA  200

seq1  ACATGACAGAGAAGGACAGAGGGAATTCAGAGGGTCACGTGGACAGCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACAGAGAAGGACAGAGGGAATTCAGAGGGTCACGTGGACAGCAGC  250

seq1  AGCACAGAATAGAAAGCATTTAGGGTTTAAGTAGGCATCTTGACATGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGAATAGAAAGCATTTAGGGTTTAAGTAGGCATCTTGACATGTTT  300

seq1  GTGCCAGAAATCACCTTGGATATGTAGGTTTGACCCTGGTCACCAGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGAAATCACCTTGGATATGTAGGTTTGACCCTGGTCACCAGAAGG  350

seq1  CTAACTGGACTTTGAAGACAGATGCCATAATCTAGAAGCTCAGTCATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGGACTTTGAAGACAGATGCCATAATCTAGAAGCTCAGTCATTTC  400

seq1  ATGCACCTACTACATTCATCTAGAGAATGCGTGTAGATTTTAGAGGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCTACTACATTCATCTAGAGAATGCGTGTAGATTTTAGAGGCAAT  450

seq1  GACTTAGGGTAAAAAGAGGCCTTGAGTGTTTCTATCCTCAGAATAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGGGTAAAAAGAGGCCTTGAGTGTTTCTATCCTCAGAATAAAAAA  500

seq1  AATAAAGTCTTTCTAGCAGCCAAAATGATCCATGGAATTGGTAAAGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTCTTTCTAGCAGCCAAAATGATCCATGGAATTGGTAAAGTAAA  550

seq1  AGAGACACCGTTCCTGAATAGCAAATCTGACTTTTTCAGTCACAACCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACCGTTCCTGAATAGCAAATCTGACTTTTTCAGTCACAACCAGC  600

seq1  ATCGCATCCTTCCAAAAATGTTCTCTCTTGCTAGTTCTGAATTCAGAGAT  650
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATCGCATCCTTCCAAAAATGTTCTCTCTTGCTATTTCTGAATTCAGAGAT  650

seq1  CCACAGGAAATATATCTCATT--GTTTCATAAAACAGTTTCCTGGAGTGA  698
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  CCACAGGAAATATATCTCATTTGTTTTCATAAAACAGTTTCCTGGAGTGA  700

seq1  CCACATGGGATGGTCGCATGTTCTGAGTCATACATTGTTAGTGATATCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGGATGGTCGCATGTTCTGAGTCATACATTGTTAGTGATATCAT  750

seq1  CCTTGTGAAGACATCACAGAGTACATCTACGTGAACCAGGATGTCTA-TA  797
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTTGTGAAGACATCACAGAGTACATCTACGTGAACCAGGATGTCTATTA  800

seq1  TCATT-AAGCAGTATAATCTTA-GGAGATCACTGTCATGTATATATGACC  845
      ||||| ||||||||| |||||| |||||||||||| ||||||||||||||
seq2  TCATTAAAGCAGTAT-ATCTTAGGGAGATCACTGTTATGTATATATGACC  849

seq1  TGTCACTGGCCAAAACATCA-TTATGCAATAC  876
      ||||| |||||||||||||| |||||||||||
seq2  TGTCATTGGCCAAAACATCATTTATGCAATAC  881

seq1: chr2_162280594_162281776
seq2: B6Ng01-114F13.g_70_1248 (reverse)

seq1  CCTTGCCAAAGAGGCTCTAAA-TACAAGGGTTTCATGAATACAAG-CAAC  48
      ||||||| ||||||||||||| ||||| |||||||  |||||||| ||  
seq2  CCTTGCCCAAGAGGCTCTAAATTACAA-GGTTTCAGAAATACAAGCCATT  49

seq1  TAAGTTTCTGTATTATTCCCCCAAAACCCTAGAAAGGACAG-AGCT-AGA  96
      || ||||||| |||||  ||||||||||||||||||||||| |||| |||
seq2  TAGGTTTCTGGATTAT--CCCCAAAACCCTAGAAAGGACAGAAGCTAAGA  97

seq1  ACTCATTGTTGAGAAACTATGA-CACA-CATCTTCTTTACCTCTTAGAAT  144
      ||||| |||||||||||||||| |||| ||||||||||||||  ||| ||
seq2  ACTCA-TGTTGAGAAACTATGACCACACCATCTTCTTTACCTTCTAG-AT  145

seq1  ATTACTTTCAATGAGATTGTTGAGTGAAAATACATGAAGATGCTTTCAAT  194
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  ATTACTTTCAATGAGA-TGTTGAGTGAAAATACATGAAGATGCTTTCAA-  193

seq1  TTTTTTTGAAAATAATCATTTATTTATTGTGTGTATGTATACATTATGTT  244
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  TTTTTTTGAAAATAATCA-TTATTTATTGTGTGTATGTATACATTATG-T  241

seq1  TGATGTATGTATGTGTTCTTGTAACCACACGCATGCCTCTATTCCTGTGA  294
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGATGTATGTATGTGTTC-TGTAACCACACGCATGCCTCTATTCCTGTGA  290

seq1  TAGTTAAGTCTCAGGGATTGAAGTGAGGTTTTTAGGCTTGGAAGCACGTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAGTCTCAGGGATTGAAGTGAGGTTTTTAGGCTTGGAAGCACGTG  340

seq1  TATTTACTCACTGAGCTACTTTGCCAGCCTTCCTAACAAAAGCTACATGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTCACTGAGCTACTTTGCCAGCCTTCCTAACAAAAGCTACATGA  390

seq1  GTTGTATGTCCACTGACAAGGTATGCACATAACTGTTTGATTATAACTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATGTCCACTGACAAGGTATGCACATAACTGTTTGATTATAACTTT  440

seq1  ACCGCCTCTGGGAATTTTAGAATACTCTGTCACAATGGTAAGAAAGAAGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCTCTGGGAATTTTAGAATACTCTGTCACAATGGTAAGAAAGAAGA  490

seq1  GACAGAAAGGAAATACCTATACGTAGCTTTTGAGAAGGTTATATATGATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAAGGAAATACCTATACGTAGCTTTTGAGAAGGTTATATATGATG  540

seq1  TAATATAAATATACACATTCAAACATTTTATCATAGCAACTGATTTAGCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAAATATACACATTCAAACATTTTATCATAGCAACTGATTTAGCC  590

seq1  TTGACAGCCAGCCTGATAGCCTTCATTTTGGGAGAATCAAACAAGAGGCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGCCAGCCTGATAGCCTTCATTTTGGGAGAATCAAACAAGAGGCT  640

seq1  GTGGTCACATAGAATAAAGAGAAAATTGCAGGAGCAACTTTGAAGGCCAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCACATAGAATAAAGAGAAAATTGCAGGAGCAACTTTGAAGGCCAT  690

seq1  TTAAGATCAGCAGATCCAAATCAGTCATTTTATACAAGACTAAGAAGGGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATCAGCAGATCCAAATCAGTCATTTTATACAAGACTAAGAAGGGA  740

seq1  ACAGAAGATTCTAGCAATATTTACTGAGTCTTTTCAGTCCCACTCTTTTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGATTCTAGCAATATTTACTGAGTCTTTTCAGTCCCACTCTTTTC  790

seq1  TTGTACTCTGAATTCATCCTCAGAACAATCTTGCAAGAACCTGTACTTGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTCTGAATTCATCCTCAGAACAATCTTGCAAGAACCTGTACTTGC  840

seq1  AAGCATTTCAAAAATAGATTCAAAAGTGCCAACAAGGTCAATGTCTTTGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTCAAAAATAGATTCAAAAGTGCCAACAAGGTCAATGTCTTTGC  890

seq1  TCGTCTAGGACGTCTCGGGTTCTTTCCACGCAGATGCGTCTAGCCCAAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTAGGACGTCTCGGGTTCTTTCCACGCAGATGCGTCTAGCCCAAGC  940

seq1  TTACTCTTTCACTTTCACTAACATTTGTTTTTATTTTATCCTTTATTAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTTCACTTTCACTAACATTTGTTTTTATTTTATCCTTTATTAGA  990

seq1  CTCCCTAACTGAAAAGTATTTGCTTTAGCAAATATGCAAAATAGGTTGCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAACTGAAAAGTATTTGCTTTAGCAAATATGCAAAATAGGTTGCA  1040

seq1  AGTTCCTTCCAAGCAGTTACATATAATCTACCATCCAGGGAACAGAAGTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTCCAAGCAGTTACATATAATCTACCATCCAGGGAACAGAAGTC  1090

seq1  ATAAATCTTAGCTTTCTTTCCTTCTATTAAGTTATATATGCTTATGTTTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTTAGCTTTCTTTCCTTCTATTAAGTTATATATGCTTATGTTTC  1140

seq1  CTTAAAAAAAACATAAATATTTCATCTAAAAGAGAATTC  1183
      |||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAAACATAAATATTTCATCTAAAAGAGAATTC  1179