BAC Information

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BAC

Clone NameB6Ng01-114J08
Chromosome2 (Build37)
Map Location 58,616,489 - 58,617,646
singlet/doubletsinglet
Overlap geneUpp2
Upstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1, LOC674940
Downstream geneBC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114J08.bB6Ng01-114J08.g
ACCDH920069DH920070
length1,0731,157
definitionDH920069|Mus musculus domesticus DNA, BAC clone: B6Ng01-114J08, 5' end.DH920070|Mus musculus domesticus DNA, BAC clone: B6Ng01-114J08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtacctcatttttaattgggttatttgattg
tttggagtctaattacttgagttggttgtatatattggatatgagcccca
gaagggcctcttgatatctagttttttattaattgagtttattattgagt
ttgaatattagtcctctatcagatgtagcattggtagcaatctttcccca
ttctgtagcctgtgggccttgtctggttgatgatgtcttttgctgtagaa
aagtttcatgaggtcccatttattaactgctgatctcagtgcctgcactt
gatggtgatctgttcagaaagtcttttcctataccaatgagttcaaaggt
attgcccactttctcttctattgggttcagtgtatctggttttatgttga
ggttttaaatcagcagttcccaacctgtgggtcatgaaacctttgggggt
tgaacaaccctttgaaggggggttagctaagaatatctgaaacacaaaca
tttacattaaaagtcatgacagtagcaacattctaattacgaagtagcaa
aaaaataaataattttatggttggggattaccacaacatgaggaaccgta
caaaaggttgcagctttaggaaggctgagaatcattgtcttggactcttt
tgtagttcagtactgtacagggtgctaagtatggatctggttggattctt
ccaccgctatccagtttgatcaacacaattggaagattctgtcctttttc
agtgtgcacttctacctttcttaaaatcaaaactcaggtgccttatccgt
acatgtgtggaactccgtctgggtcattattggtgtgtggattatgtctg
gccttcaattctattctgtttatcaatgtgtctcttttcacaccagtacc
atgctgtgtttcttactattgcttctagtacaacttgaggaggttaggga
ttgagatcatcctgcagtctctgttcatgatgtttagctatcctgtttct
tgtgttcattgaaagctgaaatgtcctttaaatatgtggaagaaattgtg
ttggaatcttgatggtgaatggc
gaattcattatgtcttaacagattgagctcacagcttaaaatccacattt
attgcggaacctcactaattctcatcttatcaaatcataaaagaatctga
gacttacaacacccttattattctcttctcagaaaaacgaccatttgtca
atattttgaatcattaagattttattgtcttataagaaatatttcatgag
aaaattgctattaaggaataataatgggagaattgtattactatgttatt
tattttatcatatacataaattgtaaaagcgattcttgctccttatttaa
aattaggaaaacatagaaaagaatattctgcgtttaaacgataccttatg
gcccttcttcctagaccaagacaccaatcaacccactttcttttcttcca
tttcatttattcattttttttctggtggtatatattccttgtacttggta
ctaggttacataaggacgttttcttataagtacatagagggctttgagta
tatgaactccatacagcctcttccattcttttttaataaaaatattaaaa
tacttataataaaactaagggtatagttctgcatagactggcagtgtggt
gagagcctgtatccctaaaacttgggaagttgaggtaggaagaccagaaa
ttcaacattcaagatcgtctttggttacataacaagttaagggccagcct
gggtaagtgagactctatcgttaaaaaaaaaattagttttaatgatgcga
cttaccacactatatattttatttaccattatgttattactattattttc
ccatattattccattttgtttgaaattcattgttcttgcgatcgagaatt
acataaactatttttgacttttgtagtaaatgtttctcattagaaacagg
acttaggtagataattatttcttgtaaagacttttcccatgcaagtatat
agtatagaatgtgtcaccgacatggtcaaagggaatgaactcacagagtc
aaaggaagttaaagatacgccagagtggcagaagctggtacttagaacta
agtttccacggctcttacctcaatgtaccaggtagatcctgaattctggc
agtgagattctccaaacataactgggaggaatgttggaaaagaggaaaga
gtttagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_58616489_58617646
seq2: B6Ng01-114J08.g_68_1224

seq1  GAATTCATTATGTCTTAACAGATTGAGCTCACAGCTTAAAATCCACATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGTCTTAACAGATTGAGCTCACAGCTTAAAATCCACATTT  50

seq1  ATTGCGGAACCTCACTAATTCTCATCTTATCAAATCATAAAAGAATCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCGGAACCTCACTAATTCTCATCTTATCAAATCATAAAAGAATCTGA  100

seq1  GACTTACAACACCCTTATTATTCTCTTCTCAGAAAAACGACCATTTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACAACACCCTTATTATTCTCTTCTCAGAAAAACGACCATTTGTCA  150

seq1  ATATTTTGAATCATTAAGATTTTATTGTCTTATAAGAAATATTTCATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGAATCATTAAGATTTTATTGTCTTATAAGAAATATTTCATGAG  200

seq1  AAAATTGCTATTAAGGAATAATAATGGGAGAATTGTATTACTATGTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCTATTAAGGAATAATAATGGGAGAATTGTATTACTATGTTATT  250

seq1  TATTTTATCATATACATAAATTGTAAAAGCGATTCTTGCTCCTTATTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATCATATACATAAATTGTAAAAGCGATTCTTGCTCCTTATTTAA  300

seq1  AATTAGGAAAACATAGAAAAGAATATTCTGCGTTTAAACGATACCTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGAAAACATAGAAAAGAATATTCTGCGTTTAAACGATACCTTATG  350

seq1  GCCCTTCTTCCTAGACCAAGACACCAATCAACCCACTTTCTTTTCTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCTTCCTAGACCAAGACACCAATCAACCCACTTTCTTTTCTTCCA  400

seq1  TTTCATTTATTCATTTTTTTTCTGGTGGTATATATTCCTTGTACTTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTATTCATTTTTTTTCTGGTGGTATATATTCCTTGTACTTGGTA  450

seq1  CTAGGTTACATAAGGACGTTTTCTTATAAGTACATAGAGGGCTTTGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTACATAAGGACGTTTTCTTATAAGTACATAGAGGGCTTTGAGTA  500

seq1  TATGAACTCCATACAGCCTCTTCCATTCTTTTTTAATAAAAATATTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACTCCATACAGCCTCTTCCATTCTTTTTTAATAAAAATATTAAAA  550

seq1  TACTTATAATAAAACTAAGGGTATAGTTCTGCATAGACTGGCAGTGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATAATAAAACTAAGGGTATAGTTCTGCATAGACTGGCAGTGTGGT  600

seq1  GAGAGCCTGTATCCCTAAAACTTGGGAAGTTGAGGTAGGAAGACCAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCTGTATCCCTAAAACTTGGGAAGTTGAGGTAGGAAGACCAGAAA  650

seq1  TTCAACATTCAAGATCGTCTTTGGTTACATAACAAGTTAAGGGCCAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATTCAAGATCGTCTTTGGTTACATAACAAGTTAAGGGCCAGCCT  700

seq1  GGGTAAGTGAGACTCTATCGTTAAAAAAAAAATTAGTTTTAATGATGCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGTGAGACTCTATCGTTAAAAAAAAAATTAGTTTTAATGATGCGA  750

seq1  CTTACCACACTATATATTTTATTTACCATTATGTTATTACTATTATTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCACACTATATATTTTATTTACCATTATGTTATTACTATTATTTTC  800

seq1  CCATATTATTCCATTTTGTTTGAAATTCATTGTTCTTGCGATCGAGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTATTCCATTTTGTTTGAAATTCATTGTTCTTGCGATCGAGAATT  850

seq1  ACATAAACTATTTTTGACTTTTGTAGTAAATGTTTCTCATTAGAAACAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACTATTTTTGACTTTTGTAGTAAATGTTTCTCATTAGAAACAGG  900

seq1  ACTTAGGTAGATAATTATTTCTTGTAAGGACTTTTCCCATGCAAGTATAT  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  ACTTAGGTAGATAATTATTTCTTGTAAAGACTTTTCCCATGCAAGTATA-  949

seq1  TAGTATAGAATGTGTCACCGACATGGTCAAAGGGAATGAACTCACAGAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGTATAGAATGTGTCACCGACATGGTCAAAGGGAATGAACTCACAG-AG  998

seq1  TCAAAGGAAGTTAAAGATACGCCAGAGTGGCAG-AGCTGGTACTTAG-AC  1048
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  TCAAAGGAAGTTAAAGATACGCCAGAGTGGCAGAAGCTGGTACTTAGAAC  1048

seq1  TAAGTTCCCACGGCTCTTA-CTCAATGTACCAGGTAGATCCTGAATTACT  1097
      |||||| |||||||||||| ||||||||||||||||||||||||||| ||
seq2  TAAGTTTCCACGGCTCTTACCTCAATGTACCAGGTAGATCCTGAATT-CT  1097

seq1  GCAAGTGAGAATTCTCCAAACATTAACTGGGAGGAATGTGGAGAAAGAGG  1147
      |  |||||| |||||||||||| |||||||||||||||| |  |||||||
seq2  GGCAGTGAG-ATTCTCCAAACA-TAACTGGGAGGAATGTTGGAAAAGAGG  1145

seq1  -ATGAGTTTAGG  1158
       | |||||||||
seq2  AAAGAGTTTAGG  1157