BAC Information

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BAC

Clone NameB6Ng01-114M24
Chromosome2 (Build37)9 (Build37)
Map Location 142,776,351 - 142,776,88519,323,641 - 19,324,166
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114M24.bB6Ng01-114M24.g
ACCDH920238DH920239
length898724
definitionDH920238|Mus musculus domesticus DNA, BAC clone: B6Ng01-114M24, 5' end.DH920239|Mus musculus domesticus DNA, BAC clone: B6Ng01-114M24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,351 - 142,776,885)(19,323,641 - 19,324,166)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttcttcatatatgttggatattagtccc
ctatctgatttaggataggtaaagaccctttcccaatctgttggtggtct
ttttgtcttattgacagtgtctttttccttgcagaaattttggagtttca
ttaagtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtacccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaaattccttga
tccacttagatttgaccttagtacaaggagataagtatggattgagtcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactagatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggtttcatttctgggtcatccattctattccattg
gtctacttgtctgtctctataccagtaccatgcagtttttatcacaattg
ctctgtagtaaagctttaggttaggcatggtgattccaccagaggttcta
ttatccttgagaagaggttttgttatcctaggttttttttttttttttgt
tattccagatgaatttgcaaattgctccttctaattcattgaagaattga
gttgggaattttgatggggattgcattgaatctgtagattgcttttggca
gatagccattttttacaatgtgatcctgccaatccatgagcatgggagat
ctttccatcttctgagatctctttaatttcttcttcagagacttgaaa
gaattcctgacatctccaatacttttaacataatggagtgttttattttg
cctaatgttttttcagcttctaatgagatcataatgtgatttttttcttt
gagtttgtttatatagtggatttcattaatgtattttcctatattgaacc
aatctttcaccccttacatgaagcctacttgattgtggtaaatgatggtt
ttcataacttcttggatttggctcactagaatttttttgagtattttgca
tccatatttataagtgaaattggtttaaaattctcttttttttgttgagt
tcttgtgtggtttaggtatcagagtaattatggattcatagaatgaagtc
ttatgcagtgttcttactctttctattttatggaatgtattgaggaatgt
tggtattagctcttccttaagggtctgctagaattgtacactaaagcctt
gtggtcctgggatatttttggttggaaaatatttaatgacttcttcaatt
tcctaagggtttaagggcctaattagatagtttacctgctctttctttag
ctttggttcatggcagttgtctagacaatcacccatttcatctatatatt
ccaattttattgagtataggcttttgtagtaggatctgatgattttttga
atctcttgtttctgttgttatttattcttttatagttctgattttgtgtg
tgtgtgtgttgttgttgttttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776351_142776885
seq2: B6Ng01-114M24.b_402_945 (reverse)

seq1  TTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAGGA  50
      ||||||||||||||| |||||||||||| |||||||||||||||||| ||
seq2  TTCAAGTCTCTGAAG-AAGAAATTAAAG-AGATCTCAGAAGATGGAAAGA  48

seq1  TCTCCCATGCTCATGGATTGGCAGGATCAACATTGT-AAAAATGGCTATC  99
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  TCTCCCATGCTCATGGATTGGCAGGATC-ACATTGTAAAAAATGGCTATC  97

seq1  TTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATT-CCAA  148
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  -TGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCCAA  146

seq1  CTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAAT  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCAATTCTTCAATGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAAT  196

seq1  AAC----------AAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATA  238
      |||          ||||||||||||||| |||||  ||||||||||||||
seq2  AACAAAAAAAAAAAAAAAACCTAGGATAACAAAACCTCTTCTCAAGGATA  246

seq1  AAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGA  288
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATAGAACCTCTGGTGGAATCACCATGCCTAACCTAAAGCTTTACTACAGA  296

seq1  GCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGA  346

seq1  CCAATGGAATAGAATTGAAGACCCAGAAATG-AACCCACACACCTATGGT  387
      ||||||||||||||| || |||||||||||| ||||||||||||||||||
seq2  CCAATGGAATAGAATGGATGACCCAGAAATGAAACCCACACACCTATGGT  396

seq1  CACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAG  437
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  CACTTGATCTTCGACAAGGGAGCTAAAACCATCTAGTGGAAGAAAGACAG  446

seq1  CATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAA  496

seq1  TGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  535
      || || || |||||||||||||||||||||||||||||||||||||||
seq2  TGCGACTCAATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  544

seq1: chr9_19323641_19324166
seq2: B6Ng01-114M24.g_267_792 (reverse)

seq1  AACAAAACAACAACAACACACACACACACAAAATCAGAACTATAAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAACAACAACACACACACACACAAAATCAGAACTATAAAAGAA  50

seq1  TAAATAACAACAGAAACAAGAGATTCAAAAAATCATCAGATCCTACTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACAACAGAAACAAGAGATTCAAAAAATCATCAGATCCTACTACA  100

seq1  AAAGCCTATACTCAATAAAATTGGAATATATAGATGAAATGGGTGATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTATACTCAATAAAATTGGAATATATAGATGAAATGGGTGATTGT  150

seq1  CTAGACAACTGCCATGAACCAAAGCTAAAGAAAGAGCAGGTAAACTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAACTGCCATGAACCAAAGCTAAAGAAAGAGCAGGTAAACTATCT  200

seq1  AATTAGGCCCTTAAACCCTTAGGAAATTGAAGAAGTCATTAAATATTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGCCCTTAAACCCTTAGGAAATTGAAGAAGTCATTAAATATTTTC  250

seq1  CAACCAAAAATATCCCAGGACCACAAGGCTTTAGTGTACAATTCTAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAAAATATCCCAGGACCACAAGGCTTTAGTGTACAATTCTAGCAG  300

seq1  ACCCTTAAGGAAGAGCTAATACCAACATTCCTCAATACATTCCATAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTAAGGAAGAGCTAATACCAACATTCCTCAATACATTCCATAAAAT  350

seq1  AGAAAGAGTAAGAACACTGCATAAGACTTCATTCTATGAATCCATAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGTAAGAACACTGCATAAGACTTCATTCTATGAATCCATAATTA  400

seq1  CTCTGATACCTAAACCACACAAGAACTCAACAAAAAAAAGAGAATTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATACCTAAACCACACAAGAACTCAACAAAAAAAAGAGAATTTTAA  450

seq1  ACCAATTTCACTTATAAATATGGATGCAAAATACTCAAAAAAATTCTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTTCACTTATAAATATGGATGCAAAATACTCAAAAAAATTCTAGT  500

seq1  GAGCCAAATCCAAGAAGTTATGAAAA  526
      ||||||||||||||||||||||||||
seq2  GAGCCAAATCCAAGAAGTTATGAAAA  526