BAC Information

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BAC

Clone NameB6Ng01-114P13
Chromosome2 (Build37)
Map Location 155,533,375 - 155,651,139
singlet/doubletdoublet
Overlap geneEdem2, Procr, Mmp24, Itgb4bp
Upstream geneLOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap
Downstream gene5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114P13.bB6Ng01-114P13.g
ACCDH920356DH920357
length1,137446
definitionDH920356|Mus musculus domesticus DNA, BAC clone: B6Ng01-114P13, 5' end.DH920357|Mus musculus domesticus DNA, BAC clone: B6Ng01-114P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,533,375 - 155,534,490)(155,650,688 - 155,651,139)
sequence
gaattcctgcagtgattgcgctccctgccctggtggtgactaggccaagg
ttagagaaccactggacccaatgactatatggggatttcttagaagaccc
aatgctgaaactgcatctgagcatttgatatgtagttgaaactctgagtt
ttatcttacctcctggaaatgataaatatgactgatttttccaaagtttc
cttcctttttttttttataagaaaaaaactgtacctctttaaataattta
tttatttttttattttgtgtgcattagtattttttcagcatgtatgtctg
tatgagggcattggattccctgatactggagttacagacagttgtgagct
actgtgtggctgctgggaattgaagtgaggtcctctggaagagcagtcat
gacctgtgagccatctctccaacctcctcaaaagttttgttgtttttttt
ttaaaacaaaacaaaacaaaacaaaacaacaacaacaaaaacgacatgag
aacaaatgtctgagaaacaccaagaactgcagagcccctgtgtgacctct
gacccctctcccagcatcactgtactggtctctctactcccaagctcctg
cattccctggagcaagaggagggaaggaatggggcacagagcacagaaca
gtgggaggcaggaggaatgttagtcttgtggctcacggggaattcaggtg
gcaagggaggacgtgcagagactaccatgcccagacaaccataatgtggc
ctggctgacgctggggccatgtgcctaccttgctgaccaagcttggcctc
tctccctagttcttcccttccccacagagggacatcagaaactggtgttc
agtctgtgatcctcttcctttgactcttgagctcgcaaagatggagacac
ggggacctttggactcaatggcccagtcccatacggtagagttgtacttt
aacccaaaccactggacagaagaaggccattagttggtaatgtcctggtg
tgtcagaaagaccccaggactcacctgactggcatcttcttttctttcct
tgtatcttcaagttgaaagagcattgaagactagaattagggagaactgc
cactttaacagcttggcaaggtactttaaccctagaa
ttgatacaccttcatctacctcccaggtttggggattagtaggtgtgtgc
cattatgcctttgcagtcctttcacctggcactgtgccccattgctacac
tcttagtttcttggttcaggcttttatgtatttacctaaaaacatttttt
ttttaatcgttaagcatgggtggtgactctacatggtttctcatttacat
taatctctgataataaaacatcctggtcttttaactgtgtccttatgaaa
tgaattctgacacgacatgagagattttagtctggtctttgttctgtttt
aaggaacgtaacgtgaggttcagaaattgagaactgtggctcaggctagg
cagacgcttgcctgtagtcatagtgtaatgttgaatgctttgtataaaaa
tgccattctttttttttttttttttttttttggtatttcgagacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_155533375_155534490
seq2: B6Ng01-114P13.b_47_1183

seq1  GAATTCCTGCAGTGATTGCGCTCCCTGCCCTGGTGGTGACTAGGCCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAGTGATTGCGCTCCCTGCCCTGGTGGTGACTAGGCCAAGG  50

seq1  TTAGAGAACCACTGGACCCAATGACTATATGGGGATTTCTTAGAAGACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAACCACTGGACCCAATGACTATATGGGGATTTCTTAGAAGACCC  100

seq1  AATGCTGAAACTGCATCTGAGCATTTGATATGTAGTTGAAACTCTGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGAAACTGCATCTGAGCATTTGATATGTAGTTGAAACTCTGAGTT  150

seq1  TTATCTTACCTCCTGGAAATGATAAATATGACTGATTTTTCCAAAGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTACCTCCTGGAAATGATAAATATGACTGATTTTTCCAAAGTTTC  200

seq1  CTTCCTTTTTTTTTTTATAAGAAAAAAACTGTACCTCTTTAAATAATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTTTTTTTTTATAAGAAAAAAACTGTACCTCTTTAAATAATTTA  250

seq1  TTTATTTTTTTATTTTGTGTGCATTAGTATTTTTTCAGCATGTATGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTTATTTTGTGTGCATTAGTATTTTTTCAGCATGTATGTCTG  300

seq1  TATGAGGGCATTGGATTCCCTGATACTGGAGTTACAGACAGTTGTGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGGCATTGGATTCCCTGATACTGGAGTTACAGACAGTTGTGAGCT  350

seq1  ACTGTGTGGCTGCTGGGAATTGAAGTGAGGTCCTCTGGAAGAGCAGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGGCTGCTGGGAATTGAAGTGAGGTCCTCTGGAAGAGCAGTCAT  400

seq1  GACCTGTGAGCCATCTCTCCAACCTCCTCAAAAGTTTTGTTGTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTGAGCCATCTCTCCAACCTCCTCAAAAGTTTTGTTGTTTTTTTT  450

seq1  TTAAAACAAAACAAAACAAAACAAAACAACAACAACAAAAACGACATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAAAACAAAACAAAACAAAACAACAACAACAAAAACGACATGAG  500

seq1  AACAAATGTCTGAGAAACACCAAGAACTGCAGAGCCCCTGTGTGACCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGTCTGAGAAACACCAAGAACTGCAGAGCCCCTGTGTGACCTCT  550

seq1  GACCCCTCTCCCAGCATCACTGTACTGGTCTCTCTACTCCCAAGCTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTCTCCCAGCATCACTGTACTGGTCTCTCTACTCCCAAGCTCCTG  600

seq1  CATTCCCTGGAGCAAGAGGAGGGAAGGAATGGGGCACAGAGCACAGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCTGGAGCAAGAGGAGGGAAGGAATGGGGCACAGAGCACAGAACA  650

seq1  GTGGGAGGCAGGAGGAATGTTAGTCTTGTGGCTCACGGGGAATTCAGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGGCAGGAGGAATGTTAGTCTTGTGGCTCACGGGGAATTCAGGTG  700

seq1  GCAAGGGAGGACGTGCAGAGACTACCATGCCCAGACAACCATAATGTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGAGGACGTGCAGAGACTACCATGCCCAGACAACCATAATGTGGC  750

seq1  CTGGCTGACGCT-GGGCCATGTGCCTACC-TGCTGACCAAGCTTGGCCTC  798
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  CTGGCTGACGCTGGGGCCATGTGCCTACCTTGCTGACCAAGCTTGGCCTC  800

seq1  TCTCCCTAGTTCTTCCC-TCCCCACAGA-GGACATCAG-AACTGGTGTTC  845
      ||||||||||||||||| |||||||||| ||||||||| |||||||||||
seq2  TCTCCCTAGTTCTTCCCTTCCCCACAGAGGGACATCAGAAACTGGTGTTC  850

seq1  AGTCTGTGATCCTCT--CCTTGACTC-TGAGCTCGCAAGGAT-GAGACAC  891
      |||||||||||||||  | ||||||| ||||||||||| ||| |||||||
seq2  AGTCTGTGATCCTCTTCCTTTGACTCTTGAGCTCGCAAAGATGGAGACAC  900

seq1  GGTGACC-TTGGACTCAATGGCCCAGTCCCATACGGTAGAAGTGTACTTT  940
      || |||| ||||||||||||||||||||||||||||||||  ||||||||
seq2  GGGGACCTTTGGACTCAATGGCCCAGTCCCATACGGTAGAGTTGTACTTT  950

seq1  -ACACAAACCACT-GACAGAAG-AGGCCATTAGTTTGTGATGTCCTG--G  985
       || ||||||||| |||||||| |||||||||||| || ||||||||  |
seq2  AACCCAAACCACTGGACAGAAGAAGGCCATTAGTTGGTAATGTCCTGGTG  1000

seq1  TGTCAG-AAGACCCCAGGACTCAGCCTGACTGGCATC-TCTTTCCTTT-C  1032
      |||||| |||||||||||||||| ||||||||||||| ||||| |||| |
seq2  TGTCAGAAAGACCCCAGGACTCA-CCTGACTGGCATCTTCTTTTCTTTCC  1049

seq1  TTGTATCTCCAAGTTTGAAAGAGCAT--GAGACTTAGAT--GGGAGACCT  1078
      |||||||| |||| ||||||||||||   |||||   ||  |||||| ||
seq2  TTGTATCTTCAAG-TTGAAAGAGCATTGAAGACTAGAATTAGGGAGAACT  1098

seq1  G-CAC-TTAACAGCCTTGGGCAAGCCACTTTAACCC-AGAA  1116
      | ||| ||||||||  | ||||||  |||||||||| ||||
seq2  GCCACTTTAACAGC--TTGGCAAGGTACTTTAACCCTAGAA  1137

seq1: chr2_155650688_155651139
seq2: B6Ng01-114P13.g_69_520 (reverse)

seq1  CTGTCTCGAAATACCAAAAAAAAAAAAAAAAAAAAAAAGAATGGCATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCGAAATACCAAAAAAAAAAAAAAAAAAAAAAAGAATGGCATTTT  50

seq1  TATACAAAGCATTCAACATTACACTATGACTACAGGCAAGCGTCTGCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAAGCATTCAACATTACACTATGACTACAGGCAAGCGTCTGCCTA  100

seq1  GCCTGAGCCACAGTTCTCAATTTCTGAACCTCACGTTACGTTCCTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGCCACAGTTCTCAATTTCTGAACCTCACGTTACGTTCCTTAAAA  150

seq1  CAGAACAAAGACCAGACTAAAATCTCTCATGTCGTGTCAGAATTCATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAAAGACCAGACTAAAATCTCTCATGTCGTGTCAGAATTCATTTC  200

seq1  ATAAGGACACAGTTAAAAGACCAGGATGTTTTATTATCAGAGATTAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGACACAGTTAAAAGACCAGGATGTTTTATTATCAGAGATTAATGT  250

seq1  AAATGAGAAACCATGTAGAGTCACCACCCATGCTTAACGATTAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAAACCATGTAGAGTCACCACCCATGCTTAACGATTAAAAAAAA  300

seq1  AATGTTTTTAGGTAAATACATAAAAGCCTGAACCAAGAAACTAAGAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTAGGTAAATACATAAAAGCCTGAACCAAGAAACTAAGAGTGT  350

seq1  AGCAATGGGGCACAGTGCCAGGTGAAAGGACTGCAAAGGCATAATGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGGGCACAGTGCCAGGTGAAAGGACTGCAAAGGCATAATGGCAC  400

seq1  ACACCTACTAATCCCCAAACCTGGGAGGTAGATGAAGGTGTATCAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTACTAATCCCCAAACCTGGGAGGTAGATGAAGGTGTATCAAGAAT  450

seq1  TC  452
      ||
seq2  TC  452