BAC Information

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BAC

Clone NameB6Ng01-115A13
Chromosome2 (Build37)
Map Location 50,772,598 - 50,773,849
singlet/doubletsinglet
Overlap genenone
Upstream gene2310010M24Rik, Lypd6, 2010311D03Rik, LOC666781, LOC227885
Downstream geneRnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115A13.bB6Ng01-115A13.g
ACCDH920402DH920403
length1,2201,122
definitionDH920402|Mus musculus domesticus DNA, BAC clone: B6Ng01-115A13, 5' end.DH920403|Mus musculus domesticus DNA, BAC clone: B6Ng01-115A13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactggttctatcacacactgtgctatcccagatggatcccagct
tgacattgaaaaatgatgcagacacactgaggtgccagcatgaatgaatg
aaggatatccttcagaatggaatgcatacctgcaatggttaatattgact
gcctacagtatctaacagttacctaggtgacacctaggcttatctttgaa
ggactttctaaattggctgaaatgaggtgggaaaacccatccttattgtg
ggtggtacctcccgtggggctggggctggacaaaggagaaaagaggtagt
aacatgccattactctttgttctgtttcctgttataccttcttccccgaa
ccctctgaaaccatgaggcaaagcacctttccttcttcaagttgttctct
taggtgtttttttttcctcccacagtgaatgtaatgctaaccaataccag
tacatttcactgaaaaattaaaatttgcacatttcttttagaaagcagta
ggaaatgaccaatttttaatttttagtatttgctgtatcagctattctat
cacagcatatctaaataataaggtgggacgtacaccagcactaacctaac
attttaccaaaagtgcatcatgaatgttttttaaatggatcactatttcc
atattacaaagaaaactatagtacagagaatttaagaatccaagaccaca
agggagttagaattttaaattatagccagtcttttgagacagttccaggg
actactctgcattttctaactgtctgattacaggataaatgtgaatgagt
tatatgagttaggtggctagtatcaaatgcatattgttccccctcttaag
ctctcattagttcaactagctctgtcaatgtactcaacaggggctgcact
ccctcggcagatgggtgatgtataactccgggaggaaggggagacagaca
ctaggtaggagaaaagagatcagagagtgagggagtcctctccctagagt
gcctctcagcccacacacacctgtaatgttcatgtcccttgtctcttcag
tctcaggatatgttaggtagggctactagttcttgtttgatgaggagaac
gtcatcttctcccagagaaagcatctctacttactcacgttactagttcc
gagccactgtgtgtttgggtggctaccacatggacgcatgccattgagca
cctgcaataactgcctgact
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgatttct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtataagcttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttgat
taggattttgtccctttgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttaatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgtgtcaagctgctagtatgtgctctctccgtttcttctt
ggaggtactcagagctatgagtttccctctagaaatgctttcattgtgtc
caagtttggtacgtgtgacttcatttcatttaactcttaaagtcttaatt
ttcttcttattcttcctgacagtatcattgaaagaaagtgttcggttcca
tgaagtgtgcttcctctctaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_50772598_50773849
seq2: B6Ng01-115A13.b_48_1267 (reverse)

seq1  AGTCAGGCACAGTTATATGCAGGTCGCCTCAATGGCAATGCTGGTTGCCA  50
      |||||||  ||||||| |||||||   ||||||||| ||||  ||  |||
seq2  AGTCAGG--CAGTTAT-TGCAGGT--GCTCAATGGC-ATGC--GT--CCA  40

seq1  TGATGGTAGCCACCACAAAACAACACAGTGGCTCTGAACTTAGGTATACG  100
      || ||||||||||| ||||   |||||||||||| |||||   ||| |||
seq2  TG-TGGTAGCCACC-CAAA--CACACAGTGGCTCGGAACT--AGTA-ACG  83

seq1  TGAGTAAAGTTAGAGGGTTGCTATTCTCTTGGGAG-AGATGACCGTCTCC  149
      ||||| ||||   || | |||| ||||| |||||| |||||||  ||| |
seq2  TGAGT-AAGT---AGAGATGCT-TTCTC-TGGGAGAAGATGACGTTCT-C  126

seq1  CTCATCAAACAAAGAAACTAGTAGCCCTTACCTAACCATTATCCTGAGAC  199
      ||||||||||||   |||||||||||| ||||||||   |||||||||||
seq2  CTCATCAAACAA--GAACTAGTAGCCC-TACCTAAC--ATATCCTGAGAC  171

seq1  TGAAGAGACAAGGGACATGAACATTACAGGTGTGTGTGGGCTGAGAGGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGACAAGGGACATGAACATTACAGGTGTGTGTGGGCTGAGAGGCA  221

seq1  CTCTAGGGAGAGGACTCCCTCACTCTCTTGATCTCCTTTTTCTCCTACCT  299
      ||||||||||||||||||||||||||| |||||||  |||||||||||||
seq2  CTCTAGGGAGAGGACTCCCTCACTCTC-TGATCTC--TTTTCTCCTACCT  268

seq1  AGTGTCTTGTCTCCCCTTCCTCCCGGAGTTATACATCACCCATCTGCCGA  349
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTC-TGTCTCCCCTTCCTCCCGGAGTTATACATCACCCATCTGCCGA  317

seq1  GGGAGTGCAGCCCCTGTTGAGTACATTGACAGAGCTAGTTGAACTAATGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGCAGCCCCTGTTGAGTACATTGACAGAGCTAGTTGAACTAATGA  367

seq1  GAGCTTAAGAGGGGGAACAATATGCATTTGATACTAGCCACCTAACTCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAAGAGGGGGAACAATATGCATTTGATACTAGCCACCTAACTCAT  417

seq1  ATAACTCATTCACATTTATCCTGTAATCAGACAGTTAGAAAATGCAGAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCATTCACATTTATCCTGTAATCAGACAGTTAGAAAATGCAGAGT  467

seq1  AGTCCCTGGAACTGTCTCAAAAGACTGGCTATAATTTAAAATTCTAACTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGGAACTGTCTCAAAAGACTGGCTATAATTTAAAATTCTAACTC  517

seq1  CCTTGTGGTCTTGGATTCTTAAATTCTCTGTACTATAGTTTTCTTTGTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGGTCTTGGATTCTTAAATTCTCTGTACTATAGTTTTCTTTGTAA  567

seq1  TATGGAAATAGTGATCCATTTAAAAAACATTCATGATGCACTTTTGGTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAATAGTGATCCATTTAAAAAACATTCATGATGCACTTTTGGTAA  617

seq1  AATGTTAGGTTAGTGCTGGTGTACGTCCCACCTTATTATTTAGATATGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAGGTTAGTGCTGGTGTACGTCCCACCTTATTATTTAGATATGCT  667

seq1  GTGATAGAATAGCTGATACAGCAAATACTAAAAATTAAAAATTGGTCATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGAATAGCTGATACAGCAAATACTAAAAATTAAAAATTGGTCATT  717

seq1  TCCTACTGCTTTCTAAAAGAAATGTGCAAATTTTAATTTTTCAGTGAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGCTTTCTAAAAGAAATGTGCAAATTTTAATTTTTCAGTGAAAT  767

seq1  GTACTGGTATTGGTTAGCATTACATTCACTGTGGGAGGAAAAAAAAACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGTATTGGTTAGCATTACATTCACTGTGGGAGGAAAAAAAAACAC  817

seq1  CTAAGAGAACAACTTGAAGAAGGAAAGGTGCTTTGCCTCATGGTTTCAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGAACAACTTGAAGAAGGAAAGGTGCTTTGCCTCATGGTTTCAGA  867

seq1  GGGTTCGGGGAAGAAGGTATAACAGGAAACAGAACAAAGAGTAATGGCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCGGGGAAGAAGGTATAACAGGAAACAGAACAAAGAGTAATGGCAT  917

seq1  GTTACTACCTCTTTTCTCCTTTGTCCAGCCCCAGCCCCACGGGAGGTACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTACCTCTTTTCTCCTTTGTCCAGCCCCAGCCCCACGGGAGGTACC  967

seq1  ACCCACAATAAGGATGGGTTTTCCCACCTCATTTCAGCCAATTTAGAAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAATAAGGATGGGTTTTCCCACCTCATTTCAGCCAATTTAGAAAG  1017

seq1  TCCTTCAAAGATAAGCCTAGGTGTCACCTAGGTAACTGTTAGATACTGTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAAGATAAGCCTAGGTGTCACCTAGGTAACTGTTAGATACTGTA  1067

seq1  GGCAGTCAATATTAACCATTGCAGGTATGCATTCCATTCTGAAGGATATC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCAATATTAACCATTGCAGGTATGCATTCCATTCTGAAGGATATC  1117

seq1  CTTCATTCATTCATGCTGGCACCTCAGTGTGTCTGCATCATTTTTCAATG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCATTCATGCTGGCACCTCAGTGTGTCTGCATCATTTTTCAATG  1167

seq1  TCAAGCTGGGATCCATCTGGGATAGCACAGTGTGTGATAGAACCAGTGAA  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTGGGATCCATCTGGGATAGCACAGTGTGTGATAGAACCAGTGAA  1217

seq1  TTC  1252
      |||
seq2  TTC  1220