BAC Information

Click to search

BAC

Clone NameB6Ng01-115F13
Chromosome2 (Build37)
Map Location 146,454,465 - 146,588,224
singlet/doubletdoublet
Overlap geneLOC668918
Upstream geneSlc24a3, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
Downstream geneGm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115F13.bB6Ng01-115F13.g
ACCDH920635DH920636
length1,1581,138
definitionDH920635|Mus musculus domesticus DNA, BAC clone: B6Ng01-115F13, 5' end.DH920636|Mus musculus domesticus DNA, BAC clone: B6Ng01-115F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,587,054 - 146,588,224)(146,454,465 - 146,455,623)
sequence
gaattctttataaaatgatgaaatctaaattccaggtactcacaactcag
tcccttgtttttcttttaaactttactttatctcttatcatatatgttcc
tataatgtgtgtgcatgtgttcctacgatgtgtgtgcacgtggtatgtgt
gggtgagtaccagtgtgctcatgccagttatgaatgtggaggtcagaaga
cagcttttgggagtcgatttgaggtttgaacttgggttatgagaatttgt
gctgcaatgcccttagctgctgagccattttgttggcccataatcctgtt
taaaatcttaatctgtgtgttagacaatcaatgtgtcagagaactttgcc
tctagtaaagtgtcaagaaagtgtgaggaagtgccaaacatattggcagc
tcatctggcatcaaagacctttgcagggtaaagaattttcttatgaaaga
gatgacaccagcaaagccaaacttcaggtagacttagctcctgaaatgtc
ttgcttctctgtcagccatgacaggcacaggatgccttcttacccttggg
tatggtacctcagaggaggcctcacagaaagaaagccatcttttcatcta
ttcaaggcatgaggacgtgcctgcttctgtgatgtggaagaaagcaacac
aataaaaatgtaattattttgacacgttcttttaaaaagcttattattta
tacttaatgccaagtggttttagactgccattatgagagagaagccactg
tccttggtccttaaactgcgagcattctaaagatgggaagccagacacaa
tcagctgcctgtggggagacatcattcccaagctgggagaggtggaaccc
cttcctgcttgtgcttcccagcgttccctctgcatcaacttttgttccat
tctacaagccaaggctcatttatcctcgggaagagagaacggtttgttga
cgccgccggagtcatccatgcttccagaccactgagggccgtgatggggg
tctggaaatcatccgtggagttctcattcagggagaagttcaactacttt
gtccatccctgttggtctggttgatgctagagatgcatcctctacacgcc
cccaatctcttccctttctaccacccttggtcatagagggggctcgacgg
tgtggcaa
gaattcaatagtctgggtaactctagaataaatagcttggctgggtgtgg
aagtcagcgggtggatctcgatgaatagagccctcagtgtctctggtgca
caactggtcttcttttgtttatgagtctttagctctctgttatataaaca
tctggagggctgagtatcatttctgcactagtcaaggaagaatgcatctt
atattctcccacaaaaaggcaaactggtgtgtgggctgcaccagcgaagg
aactggaaaatctgtgtggtgtggccttgaaggagtcactctgggcctgt
gaatcacttttctttcctcccccaacatctgtgaagcaatgaaatagtat
gtgtgaagaagactcgagattcctttccgggtagaactgagtgtgtttgt
ttgacatcagcagcagccataaacagggcagcgtatcaaatggaaatgaa
actgtagtcatagctttcaaacattatttttttccactgaagtagtgagc
agtctgccaatcacaaaactgcttaattcaatatctggagtatttttcca
ttgtggttacctgtgtgtgtaccttctggggctctaggatgaataaaaaa
caaaccaaaacaaaaacagttaacatcaccatctgatcagtgttttgtcc
tgaagatgaagtgaaggacttgattgtttttgaccatactggtcatggat
agcttcactattgaaaatgtggttcaccgaccagtgtcatagacatgaca
tcatccatgaccttgttggaaaggcagactcagggtatccccactcctac
aaccttgaatcagaatctgcctattaacaaaatccctaatgccttcctta
tgctgttgaaccatatatacaccaaactttgatgctttgttaaaatatcc
ttacttagaccacagtccccgacgcacatttattgagattctactgtatg
ccatggaccattgtaggtattgaggaaagagagaatcctggttttcacag
aacattagtgctgagagaagagggaggggtgaagacacgagcaattacta
ggttttataagatctctggtatctgtaaaaacaaaacaaaccgatcacac
cccactccacccatctcgaattgagcatgtagctcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_146587054_146588224
seq2: B6Ng01-115F13.b_47_1204 (reverse)

seq1  TTGCCACAAACCGTCTGAGCCCCCTCTATGACCAGGGGTGGGTAGAAAGG  50
      |||||||  |||||| |||||||||||||||||| |||| ||||||||||
seq2  TTGCCAC--ACCGTC-GAGCCCCCTCTATGACCAAGGGT-GGTAGAAAGG  46

seq1  GAAGAGATTGGGGGCGTGTTGAGGGATTGCATCTCTTAGCATCAAACCAA  100
      ||||||||||||||||||| ||||   |||||||| |||||||||  | |
seq2  GAAGAGATTGGGGGCGTGTAGAGG--ATGCATCTC-TAGCATCAA--CCA  91

seq1  GACAAACAGGGATGGGACAAAAGTAGTTGAACTTCTCCCCTGAATGAGAA  150
      ||| ||||||||| |||| ||||||||||||||||| ||||||||||| |
seq2  GACCAACAGGGAT-GGAC-AAAGTAGTTGAACTTCT-CCCTGAATGAG-A  137

seq1  ACTCCACGGATGATTTCCAGACCCCCATCACGGCCCTCAGTGGTCTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACGGATGATTTCCAGACCCCCATCACGGCCCTCAGTGGTCTGGAA  187

seq1  GCATGGATGACTCCGGCGGCGTCAACAAACCGTTCTCTCTTCCTGAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCATGGATGACTCCGGCGGCGTCAACAAACCGTTCTCTCTTCCCGAGGAT  237

seq1  AAATGAGCCTTGGCTTGTAGAATGGAACAAAAGTTGATGCAGAGGGAACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCCTTGGCTTGTAGAATGGAACAAAAGTTGATGCAGAGGGAACG  287

seq1  CTGGGAAGCACAAGCAGGAAGGGGTTCCACCTCTCCCAGCTTGGGAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGCACAAGCAGGAAGGGGTTCCACCTCTCCCAGCTTGGGAATGA  337

seq1  TGTCTCCCCACAGGCAGCTGATTGTGTCTGGCTTCCCATCTTTAGAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCCCACAGGCAGCTGATTGTGTCTGGCTTCCCATCTTTAGAATGC  387

seq1  TCGCAGTTTAAGGACCAAGGACAGTGGCTTCTCTCTCATAATGGCAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGTTTAAGGACCAAGGACAGTGGCTTCTCTCTCATAATGGCAGTCT  437

seq1  AAAACCACTTGGCATTAAGTATAAATAATAAGCTTTTTAAAAGAACGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACTTGGCATTAAGTATAAATAATAAGCTTTTTAAAAGAACGTGT  487

seq1  CAAAATAATTACATTTTTATTGTGTTGCTTTCTTCCACATCACAGAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATTACATTTTTATTGTGTTGCTTTCTTCCACATCACAGAAGCA  537

seq1  GGCACGTCCTCATGCCTTGAATAGATGAAAAGATGGCTTTCTTTCTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGTCCTCATGCCTTGAATAGATGAAAAGATGGCTTTCTTTCTGTGA  587

seq1  GGCCTCCTCTGAGGTACCATACCCAAGGGTAAGAAGGCATCCTGTGCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCTCTGAGGTACCATACCCAAGGGTAAGAAGGCATCCTGTGCCTG  637

seq1  TCATGGCTGACAGAGAAGCAAGACATTTCAGGAGCTAAGTCTACCTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTGACAGAGAAGCAAGACATTTCAGGAGCTAAGTCTACCTGAAG  687

seq1  TTTGGCTTTGCTGGTGTCATCTCTTTCATAAGAAAATTCTTTACCCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTTGCTGGTGTCATCTCTTTCATAAGAAAATTCTTTACCCTGCA  737

seq1  AAGGTCTTTGATGCCAGATGAGCTGCCAATATGTTTGGCACTTCCTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTTTGATGCCAGATGAGCTGCCAATATGTTTGGCACTTCCTCACA  787

seq1  CTTTCTTGACACTTTACTAGAGGCAAAGTTCTCTGACACATTGATTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGACACTTTACTAGAGGCAAAGTTCTCTGACACATTGATTGTCT  837

seq1  AACACACAGATTAAGATTTTAAACAGGATTATGGGCCAACAAAATGGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAGATTAAGATTTTAAACAGGATTATGGGCCAACAAAATGGCTC  887

seq1  AGCAGCTAAGGGCATTGCAGCACAAATTCTCATAACCCAAGTTCAAACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTAAGGGCATTGCAGCACAAATTCTCATAACCCAAGTTCAAACCT  937

seq1  CAAATCGACTCCCAAAAGCTGTCTTCTGACCTCCACATTCATAACTGGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCGACTCCCAAAAGCTGTCTTCTGACCTCCACATTCATAACTGGCA  987

seq1  TGAGCACACTGGTACTCACCCACACATACCACGTGCACACACATCGTAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACACTGGTACTCACCCACACATACCACGTGCACACACATCGTAGG  1037

seq1  AACACATGCACACACATTATAGGAACATATATGATAAGAGATAAAGTAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGCACACACATTATAGGAACATATATGATAAGAGATAAAGTAAA  1087

seq1  GTTTAAAAGAAAAACAAGGGACTGAGTTGTGAGTACCTGGAATTTAGATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAGAAAAACAAGGGACTGAGTTGTGAGTACCTGGAATTTAGATT  1137

seq1  TCATCATTTTATAAAGAATTC  1171
      |||||||||||||||||||||
seq2  TCATCATTTTATAAAGAATTC  1158

seq1: chr2_146454465_146455623
seq2: B6Ng01-115F13.g_68_1205

seq1  GAATTCAATAGTCTGGGTAACTCTAGAATAAATAGCTTGGCTGGGTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGTCTGGGTAACTCTAGAATAAATAGCTTGGCTGGGTGTGG  50

seq1  AAGTCAGCGGGTGGATCTCGATGAATAGAGCCCTCAGTGTCTCTGGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGCGGGTGGATCTCGATGAATAGAGCCCTCAGTGTCTCTGGTGCA  100

seq1  CAACTGGTCTTCTTTTGTTTATGAGTCTTTAGCTCTCTGTTATATAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGTCTTCTTTTGTTTATGAGTCTTTAGCTCTCTGTTATATAAACA  150

seq1  TCTGGAGGGCTGAGTATCATTTCTGCACTAGTCAAGGAAGAATGCATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGGCTGAGTATCATTTCTGCACTAGTCAAGGAAGAATGCATCTT  200

seq1  ATATTCTCCCACAAAAAGGCAAACTGGTGTGTGGGCTGCACCAGCGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCCCACAAAAAGGCAAACTGGTGTGTGGGCTGCACCAGCGAAGG  250

seq1  AACTGGAAAATCTGTGTGGTGTGGCCTTGAAGGAGTCACTCTGGGCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAAAATCTGTGTGGTGTGGCCTTGAAGGAGTCACTCTGGGCCTGT  300

seq1  GAATCACTTTTCTTTCCTCCCCCAACATCTGTGAAGCAATGAAATAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACTTTTCTTTCCTCCCCCAACATCTGTGAAGCAATGAAATAGTAT  350

seq1  GTGTGAAGAAGACTCGAGATTCCTTTCCGGGTAGAACTGAGTGTGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAGAAGACTCGAGATTCCTTTCCGGGTAGAACTGAGTGTGTTTGT  400

seq1  TTGACATCAGCAGCAGCCATAAACAGGGCAGCGTATCAAATGGAAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATCAGCAGCAGCCATAAACAGGGCAGCGTATCAAATGGAAATGAA  450

seq1  ACTGTAGTCATAGCTTTCAAACATTATTTTTTTCCACTGAAGTAGTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGTCATAGCTTTCAAACATTATTTTTTTCCACTGAAGTAGTGAGC  500

seq1  AGTCTGCCAATCACAAAACTGCTTAATTCAATATCTGGAGTATTTTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCCAATCACAAAACTGCTTAATTCAATATCTGGAGTATTTTTCCA  550

seq1  TTGTGGTTACCTGTGTGTGTACCTTCTGGGGCTCTAGGATGAATAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTACCTGTGTGTGTACCTTCTGGGGCTCTAGGATGAATAAAAAA  600

seq1  CAAACCAAAACAAAAACAGTTAACATCACCATCTGATCAGTGTTTTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAAACAAAAACAGTTAACATCACCATCTGATCAGTGTTTTGTCC  650

seq1  TGAAGATGAAGTGAAGGACTTGATTGTTTTTGACCATACTGGTCATGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGAAGTGAAGGACTTGATTGTTTTTGACCATACTGGTCATGGAT  700

seq1  AGCTTCACTATTGAAAATGTGGTTCACCGACCAGTGTCATAGACATGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCACTATTGAAAATGTGGTTCACCGACCAGTGTCATAGACATGACA  750

seq1  TCATCCATGACCTTGTTGGAAAGGCAGACTCAGGGTATCCCCACTCCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATGACCTTGTTGGAAAGGCAGACTCAGGGTATCCCCACTCCTAC  800

seq1  AACCTTGAATCAGAATCTGCCTATTAACAAAATCCCTAATGCCTTCCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGAATCAGAATCTGCCTATTAACAAAATCCCTAATGCCTTCCTTA  850

seq1  TGCTGTTGAACCATATATACACCAAACTTTGATGCTTTGTTAAAATATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTGAACCATATATACACCAAACTTTGATGCTTTGTTAAAATATCC  900

seq1  TTACTTAGACCACAGTCCCCGACGCACATTTATTGAGATTCTACTGTATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAGACCACAGTCCCCGACGCACATTTATTGAGATTCTACTGTATG  950

seq1  CCATGGACCATTGTAGGTATTGAGGATAGAGAGAAATCCTGGTTTTCACA  1000
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  CCATGGACCATTGTAGGTATTGAGGAAAGAGAG-AATCCTGGTTTTCACA  999

seq1  GAACATTAGTGCTGAGAGAAAGAGGGAGGGGTGAAGAACACGAGCAAATA  1050
      |||||||||||||||||| ||||||||||||||||| |||||||| ||| 
seq2  GAACATTAGTGCTGAGAG-AAGAGGGAGGGGTGAAG-ACACGAGC-AATT  1046

seq1  ACTAAGGTTTTTATAAGATCTCTGGTAATTCTGTTTAAAAACAAAACAAA  1100
      ||||  | |||||||||||||||||||  ||||  |||||||||||||||
seq2  ACTA--GGTTTTATAAGATCTCTGGTA--TCTG--TAAAAACAAAACAAA  1090

seq1  CAGATCAACAACCCCCACCCCCACCCCAACCCTCCAGAAATTGAGCATGG  1150
      | |||||        || |||||| ||| || ||  | |||||||||| |
seq2  CCGATCA--------CA-CCCCACTCCACCCATCTCG-AATTGAGCAT-G  1129

seq1  TAGCTCATG  1159
      |||||||||
seq2  TAGCTCATG  1138