BAC Information

Click to search

BAC

Clone NameB6Ng01-115J24
Chromosome2 (Build37)
Map Location 147,465,924 - 147,589,810
singlet/doubletdoublet
Overlap geneLOC640914, A530006G24Rik
Upstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
Downstream geneLOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115J24.bB6Ng01-115J24.g
ACCDH920841DH920842
length1,207255
definitionDH920841|Mus musculus domesticus DNA, BAC clone: B6Ng01-115J24, 5' end.DH920842|Mus musculus domesticus DNA, BAC clone: B6Ng01-115J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,588,614 - 147,589,810)(147,465,924 - 147,466,178)
sequence
gaattctcttggggatttaaaaaatatctacacaggccaagaaaccctat
gaatctgttcacatccaatacactaaaactccagctcaactgtatttagg
gtagcacatagaagccagggatatgggcactcagcctcattaataagcct
cattattaagttcttagataaactctcttcagtagcataaagaggcacca
aagaagatatcaaaaaaggcatacaggaagcatccctttcaaaggaccaa
cttttaatgtaagtcactctgagtgactagacttggccaaccagtgctgc
acaagaagggttatgtgggggcgatcaggcacttacctttcaggggaaaa
ctggctgaaagaaatggagcaggatcctgggaacatgagacaaagtgtgc
ccatacccaaatggaaagtttgctttcaaaatcaggtgagtcacatagag
tgatgggcagaagaaacccagatgacagctgtctccagaggcttcgggat
gcagggcatggaaatggcttcatgctgctctcactggactggcctggcct
catgaagaaaatattgccatgcttgcctgagatcttaccgccatggcttt
aatagccatgagtcaaggtgcagaatttattcaatattgaaaaggaaact
tcttggatttattcaggtgcatgccagatgttgtgtgagcattggcctca
caaagagagactcctagaaatcaactgcaggccctgggatcccatactct
tttcctcaattaacccttaggagcccatagaaaccaatcctaacaccatc
ggcagctcagagggctggcagttactatattcactcattgttgcaacaca
cagacctatacccaaggcaaggcaaacaacaagttagacatagcatggta
tgtatgtctctatgttgtaaagaactcagtcagtgtaccaggatatgcaa
ttgatggacagtcttgtatgttgaaattcacttatctaccttcttaagtt
cttttactggggaaaacttatcaaacatgccacatatttttaagaagttt
tcattagttgtaatgaatgaactgaagctcaagggagtcagaaaacattc
cattttgttttctatgcttcatgttttcttatctcaaaccgaggtgaaca
catgacagagactttcccatccattgctactttatgacttcttaaagaat
cttctgg
atcagactttcgtttttgttgtaacaactctacttaattcagcttatttt
catgtacatttcagcttaaaacttctggtgtatactcattaatcttgttc
aataaggagttacatgacatgcattaatgcttccttgtgaaagaaatggt
tgcaaaatatcagctaaagctttctgtagcctctagcacacagatatagt
tgtgtaaatgagatttcaaggttagtgggtgaatccggaccctgttgtag
tgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_147588614_147589810
seq2: B6Ng01-115J24.b_46_1252 (reverse)

seq1  CCAGAAGATCTTTTAAGGAAGGTCATAAAAGGTAGC-ATTGATGGGAA--  47
      |||||||||  ||||||  | ||||||||  ||||| || ||||||||  
seq2  CCAGAAGATTCTTTAAG--AAGTCATAAA--GTAGCAATGGATGGGAAAG  46

seq1  -GTCTGTCATGTGTTTCACCTC-GTTTG-GGTA--GAAACATGGAGCATT  92
        ||||||||||| |||||||| ||||| | ||   ||||||| |||| |
seq2  TCTCTGTCATGTG-TTCACCTCGGTTTGAGATAAGAAAACATGAAGCA-T  94

seq1  GGGAAACCAAAT-GTATGGTCTCTGACTCCCTTGAGCTTCCAGTTCATTC  141
       | |||| |||| | ||| | |||||||||||||||||| ||||||||||
seq2  AGAAAACAAAATGGAATGTTTTCTGACTCCCTTGAGCTT-CAGTTCATTC  143

seq1  ATTACAACT-ATGGAAAC-TCT--AAAATATGTGGCCATGTTTGAT-AGT  186
      ||||||||| ||| |||| |||  ||||||||||| |||||||||| |||
seq2  ATTACAACTAATGAAAACTTCTTAAAAATATGTGG-CATGTTTGATAAGT  192

seq1  TTTCCCCAGT-AAAGAACTT-AGAAGGTAGATAAGTGAATTTCAACATAC  234
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  TTTCCCCAGTAAAAGAACTTAAGAAGGTAGATAAGTGAATTTCAACATAC  242

seq1  -AGACTGT-CATCAATTGCATATCCTGGTACACTGACTGAGTTCTTTACA  282
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTCCATCAATTGCATATCCTGGTACACTGACTGAGTTCTTTACA  292

seq1  ACATAGAGACATACATACCATGCTATGTCTAACTTGTTGTTTGCCTTGCC  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGACATACATACCATGCTATGTCTAACTTGTTGTTTGCCTTGCC  342

seq1  TTGGGTATAGGTCTGTGTGTTGCAACAATGAGTGAATATAGTAACTGCCA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTATAGGTCTGTGTGTTGCAACAATGAGTGAATATAGTAACTGCCA  392

seq1  GCCCTCTGAGCTGCCGATGGTGTTAGGATTGGTTTCTATGGGCTCCTAAG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGAGCTGCCGATGGTGTTAGGATTGGTTTCTATGGGCTCCTAAG  442

seq1  GGTTAATTGAGGAAAAGAGTATGGGATCCCAGGGCCTGCAGTTGATTTCT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATTGAGGAAAAGAGTATGGGATCCCAGGGCCTGCAGTTGATTTCT  492

seq1  AGGAGTCTCTCTTTGTGAGGCCAATGCTCACACAACATCTGGCATGCACC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTCTCTTTGTGAGGCCAATGCTCACACAACATCTGGCATGCACC  542

seq1  TGAATAAATCCAAGAAGTTTCCTTTTCAATATTGAATAAATTCTGCACCT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAATCCAAGAAGTTTCCTTTTCAATATTGAATAAATTCTGCACCT  592

seq1  TGACTCATGGCTATTAAAGCCATGGCGGTAAGATCTCAGGCAAGCATGGC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCATGGCTATTAAAGCCATGGCGGTAAGATCTCAGGCAAGCATGGC  642

seq1  AATATTTTCTTCATGAGGCCAGGCCAGTCCAGTGAGAGCAGCATGAAGCC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCTTCATGAGGCCAGGCCAGTCCAGTGAGAGCAGCATGAAGCC  692

seq1  ATTTCCATGCCCTGCATCCCGAAGCCTCTGGAGACAGCTGTCATCTGGGT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATGCCCTGCATCCCGAAGCCTCTGGAGACAGCTGTCATCTGGGT  742

seq1  TTCTTCTGCCCATCACTCTATGTGACTCACCTGATTTTGAAAGCAAACTT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGCCCATCACTCTATGTGACTCACCTGATTTTGAAAGCAAACTT  792

seq1  TCCATTTGGGTATGGGCACACTTTGTCTCATGTTCCCAGGATCCTGCTCC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGGGTATGGGCACACTTTGTCTCATGTTCCCAGGATCCTGCTCC  842

seq1  ATTTCTTTCAGCCAGTTTTCCCCTGAAAGGTAAGTGCCTGATCGCCCCCA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTCAGCCAGTTTTCCCCTGAAAGGTAAGTGCCTGATCGCCCCCA  892

seq1  CATAACCCTTCTTGTGCAGCACTGGTTGGCCAAGTCTAGTCACTCAGAGT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCCTTCTTGTGCAGCACTGGTTGGCCAAGTCTAGTCACTCAGAGT  942

seq1  GACTTACATTAAAAGTTGGTCCTTTGAAAGGGATGCTTCCTGTATGCCTT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACATTAAAAGTTGGTCCTTTGAAAGGGATGCTTCCTGTATGCCTT  992

seq1  TTTTGATATCTTCTTTGGTGCCTCTTTATGCTACTGAAGAGAGTTTATCT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATATCTTCTTTGGTGCCTCTTTATGCTACTGAAGAGAGTTTATCT  1042

seq1  AAGAACTTAATAATGAGGCTTATTAATGAGGCTGAGTGCCCATATCCCTG  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTAATAATGAGGCTTATTAATGAGGCTGAGTGCCCATATCCCTG  1092

seq1  GCTTCTATGTGCTACCCTAAATACAGTTGAGCTGGAGTTTTAGTGTATTG  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTATGTGCTACCCTAAATACAGTTGAGCTGGAGTTTTAGTGTATTG  1142

seq1  GATGTGAACAGATTCATAGGGTTTCTTGGCCTGTGTAGATATTTTTTAAA  1182
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAACAGATTCATAGGGTTTCTTGGCCTGTGTAGATATTTTTTAAA  1192

seq1  TCCCCAAGAGAATTC  1197
      |||||||||||||||
seq2  TCCCCAAGAGAATTC  1207

seq1: chr2_147465924_147466178
seq2: B6Ng01-115J24.g_74_328

seq1  ATCAGACTTTCGTTTTTGTTGTAACAACTCTACTTAATTCAGCTTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACTTTCGTTTTTGTTGTAACAACTCTACTTAATTCAGCTTATTTT  50

seq1  CATGTACATTTCAGCTTAAAACTTCTGGTGTATACTCATTAATCTTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACATTTCAGCTTAAAACTTCTGGTGTATACTCATTAATCTTGTTC  100

seq1  AATAAGGAGTTACATGACATGCATTAATGCTTCCTTGTGAAAGAAATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGAGTTACATGACATGCATTAATGCTTCCTTGTGAAAGAAATGGT  150

seq1  TGCAAAATATCAGCTAAAGCTTTCTGTAGCCTCTAGCACACAGATATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATATCAGCTAAAGCTTTCTGTAGCCTCTAGCACACAGATATAGT  200

seq1  TGTGTAAATGAGATTTCAAGGTTAGTGGGTGAATCCGGACCCTGTTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAATGAGATTTCAAGGTTAGTGGGTGAATCCGGACCCTGTTGTAG  250

seq1  TGTGT  255
      |||||
seq2  TGTGT  255