BAC Information

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BAC

Clone NameB6Ng01-115K18
Chromosome2 (Build37)
Map Location 75,083,576 - 75,215,906
singlet/doubletdoublet
Overlap genenone
Upstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
Downstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115K18.bB6Ng01-115K18.g
ACCDH920876DH920877
length1,144597
definitionDH920876|Mus musculus domesticus DNA, BAC clone: B6Ng01-115K18, 5' end.DH920877|Mus musculus domesticus DNA, BAC clone: B6Ng01-115K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,214,750 - 75,215,906)(75,083,576 - 75,084,172)
sequence
gaattcaatcttcagtagagatgggaaattgagccctatttttcatagaa
ttattctttacttttgtgtcttctgtggttgagagtgaaccgtcttatca
gctgggccaataagatcattaatggaaaacagtgctgtgcaccagtggct
ctttactccttgatcaatagttatttacttctaaggggtcacagcttggt
taatatagctgaataattttattgatagataacataacaatgaaaaataa
agtttaaaatggaagacgaatgaacacagcactttctccaggcatgaata
ttattatttgaaaaccgtaatagccgctgcaatgttgaaagggcagacaa
caaaagcactgaataattgttctaggaccataatcagacttccattattg
acctctgttaatattccactgtaactgtctgctaaattggttccttgggg
cttgaaatatacagtgatgttatgagttcctatcgtaaattgccacacag
taaagtagcaagtctctgaaatagtgttggccctagtttgatcaatactc
aattcaaagcagtgcaatgggcaactgtttccatagaaacattgatgtca
cagaggttgaacagcggctgttacaacaaatcatttcctttgagcagttg
taattgactatatgtacagtttgctgtcacttgagaccatttacatcaag
caagtaacagaaccacattagttattctaggagtaagagggttagctctt
ccctttgtgaccttacaaatacctaggaggatgtcgccatagaaaccggc
agaataactgatgaacatgggggtccaatgctacctggatgcagtagcct
tttgggagctgaaaggtagtctgaagtttcccattgctacgttaacacag
gcacctgctacccatagtagtggcctgactgctttctctcagacaacacc
aggatgcagacatcttaattccatttgcacttcatttctgctccttgctt
taagtttcacagcgtctggctgctaagctgcacatgtgcacattggtaac
tctcaactgctctctagctggctctggagaagcgcctccctgtttgcaat
aaagattttgaagagaacttggacaaagcttaaatgtttacttt
gaattctctccggtagctctctgtatgtgacgtgagtctcctactcatat
taatgatgagacctcttccatcaatatcttggactattaccagtgtctcg
gaaacattttattggctgctgcagttcattgagaattaattgatatgaca
cacttactctacatgaacttggaaaaaaaaagtctatcaagtgagtgatt
taattcattttatgttaattataaactatgccaggaaacaccattatgga
cggacttgtttccagctctcagatggcatgtgtgagcagtttgtatttcc
gacacgctgcatactctgactttgactgaccagccaacactcatcttagg
agacacactcatctggcacactagtcgctagtcctgctagctagcaatgt
ggcctgttcttaaacaaattaaactgggaggaggcagcaaaatggcccac
ttatctttatttgtaatttaaccaacattatgagagacaacctccaattt
gggctatttaattttttttttgcccgagtcctgtatatatttaaataacc
ccctaagtgtttttgtgaaattgaaggggaagtgggtgggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75214750_75215906
seq2: B6Ng01-115K18.b_47_1190 (reverse)

seq1  AAAGTTAAACATATAAGGCTTTGTCAAAGGTTCCTCTTCCAAAATCTCTA  50
      |||| ||||||| ||| |||||||| |||  | ||||| |||||||| ||
seq2  AAAG-TAAACATTTAA-GCTTTGTCCAAG--TTCTCTT-CAAAATCTTTA  45

seq1  TTGCAGACAGGGGAGCGCTTCTCCAGAGCCAAGCTAGAGAGCAGTTGAGA  100
      ||||| ||||||  |||||||||||||||| |||||||||||||||||||
seq2  TTGCAAACAGGGAGGCGCTTCTCCAGAGCC-AGCTAGAGAGCAGTTGAGA  94

seq1  GTTTACCAAATGTGCACATGTGCAGCCTTAGCAGCCAGACGCCTGTGGAA  150
      | ||||| ||||||||||||||||| ||||||||||||||| |||| |||
seq2  G-TTACC-AATGTGCACATGTGCAG-CTTAGCAGCCAGACG-CTGT-GAA  139

seq1  ACTTAAAGGCAAGGAGCAGGAAATGAAGTGCAAATGGAATTAAGATGTCT  200
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  ACTTAAA-GCAAGGAGCA-GAAATGAAGTGCAAATGGAATTAAGATGTCT  187

seq1  GCATCCTGGTGTTGTCTGAGAGAAAGCAGTCAGGCCACTACTATGGGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGGTGTTGTCTGAGAGAAAGCAGTCAGGCCACTACTATGGGTAG  237

seq1  CAGGTGCCTGTGTTAACGTAGCAATGGGAAACTTCAGACTACCTTTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCCTGTGTTAACGTAGCAATGGGAAACTTCAGACTACCTTTCAGC  287

seq1  TCCCAAAAGGCTACTGCATCCAGGTAGCATTGGACCCCCATGTTCATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAAGGCTACTGCATCCAGGTAGCATTGGACCCCCATGTTCATCAG  337

seq1  TTATTCTGCCGGTTTCTATGGCGACATCCTCCTAGGTATTTGTAAGGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGCCGGTTTCTATGGCGACATCCTCCTAGGTATTTGTAAGGTCA  387

seq1  CAAAGGGAAGAGCTAACCCTCTTACTCCTAGAATAACTAATGTGGTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGAAGAGCTAACCCTCTTACTCCTAGAATAACTAATGTGGTTCTG  437

seq1  TTACTTGCTTGATGTAAATGGTCTCAAGTGACAGCAAACTGTACATATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGCTTGATGTAAATGGTCTCAAGTGACAGCAAACTGTACATATAG  487

seq1  TCAATTACAACTGCTCAAAGGAAATGATTTGTTGTAACAGCCGCTGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTACAACTGCTCAAAGGAAATGATTTGTTGTAACAGCCGCTGTTCA  537

seq1  ACCTCTGTGACATCAATGTTTCTATGGAAACAGTTGCCCATTGCACTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGTGACATCAATGTTTCTATGGAAACAGTTGCCCATTGCACTGCT  587

seq1  TTGAATTGAGTATTGATCAAACTAGGGCCAACACTATTTCAGAGACTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGAGTATTGATCAAACTAGGGCCAACACTATTTCAGAGACTTGC  637

seq1  TACTTTACTGTGTGGCAATTTACGATAGGAACTCATAACATCACTGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTACTGTGTGGCAATTTACGATAGGAACTCATAACATCACTGTATA  687

seq1  TTTCAAGCCCCAAGGAACCAATTTAGCAGACAGTTACAGTGGAATATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGCCCCAAGGAACCAATTTAGCAGACAGTTACAGTGGAATATTAA  737

seq1  CAGAGGTCAATAATGGAAGTCTGATTATGGTCCTAGAACAATTATTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCAATAATGGAAGTCTGATTATGGTCCTAGAACAATTATTCAGT  787

seq1  GCTTTTGTTGTCTGCCCTTTCAACATTGCAGCGGCTATTACGGTTTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTTGTCTGCCCTTTCAACATTGCAGCGGCTATTACGGTTTTCAA  837

seq1  ATAATAATATTCATGCCTGGAGAAAGTGCTGTGTTCATTCGTCTTCCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATATTCATGCCTGGAGAAAGTGCTGTGTTCATTCGTCTTCCATT  887

seq1  TTAAACTTTATTTTTCATTGTTATGTTATCTATCAATAAAATTATTCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTTATTTTTCATTGTTATGTTATCTATCAATAAAATTATTCAGC  937

seq1  TATATTAACCAAGCTGTGACCCCTTAGAAGTAAATAACTATTGATCAAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAACCAAGCTGTGACCCCTTAGAAGTAAATAACTATTGATCAAGG  987

seq1  AGTAAAGAGCCACTGGTGCACAGCACTGTTTTCCATTAATGATCTTATTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAGCCACTGGTGCACAGCACTGTTTTCCATTAATGATCTTATTG  1037

seq1  GCCCAGCTGATAAGACGGTTCACTCTCAACCACAGAAGACACAAAAGTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCTGATAAGACGGTTCACTCTCAACCACAGAAGACACAAAAGTAA  1087

seq1  AGAATAATTCTATGAAAAATAGGGCTCAATTTCCCATCTCTACTGAAGAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATTCTATGAAAAATAGGGCTCAATTTCCCATCTCTACTGAAGAT  1137

seq1  TGAATTC  1157
      |||||||
seq2  TGAATTC  1144

seq1: chr2_75083576_75084172
seq2: B6Ng01-115K18.g_69_665

seq1  GAATTCTCTCCGGTAGCTCTCTGTATGTGACGTGAGTCTCCTACTCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCGGTAGCTCTCTGTATGTGACGTGAGTCTCCTACTCATAT  50

seq1  TAATGATGAGACCTCTTCCATCAATATCTTGGACTATTACCAGTGTCTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGAGACCTCTTCCATCAATATCTTGGACTATTACCAGTGTCTCG  100

seq1  GAAACATTTTATTGGCTGCTGCAGTTCATTGAGAATTAATTGATATGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTTTATTGGCTGCTGCAGTTCATTGAGAATTAATTGATATGACA  150

seq1  CACTTACTCTACATGAACTTGGAAAAAAAAAGTCTATCAAGTGAGTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTCTACATGAACTTGGAAAAAAAAAGTCTATCAAGTGAGTGATT  200

seq1  TAATTCATTTTATGTTAATTATAAACTATGCCAGGAAACACCATTATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATTTTATGTTAATTATAAACTATGCCAGGAAACACCATTATGGA  250

seq1  CGGACTTGTTTCCAGCTCTCAGATGGCATGTGTGAGCAGTTTGTATTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACTTGTTTCCAGCTCTCAGATGGCATGTGTGAGCAGTTTGTATTTCC  300

seq1  GACACGCTGCATACTCTGACTTTGACTGACCAGCCAACACTCATCTTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGCTGCATACTCTGACTTTGACTGACCAGCCAACACTCATCTTAGG  350

seq1  AGACACACTCATCTGGCACACTAGTCGCTAGTCCTGCTAGCTAGCAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACTCATCTGGCACACTAGTCGCTAGTCCTGCTAGCTAGCAATGT  400

seq1  GGCCTGTTCTTAAACAAATTAAACTGGGAGGAGGCAGCAAAATGGCCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTTCTTAAACAAATTAAACTGGGAGGAGGCAGCAAAATGGCCCAC  450

seq1  TTATCTTTATTTGTAATTTAACCAACATTATGAGAGACAACCTCCAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTATTTGTAATTTAACCAACATTATGAGAGACAACCTCCAATTT  500

seq1  GGGCTATTTAATTTTTTTTTTGCCCGAGTCCTGTATATATTTAAATAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATTTAATTTTTTTTTTGCCCGAGTCCTGTATATATTTAAATAACC  550

seq1  CCCTAAGTGTTTTTGTGAAATTGAAGGGGAAGTGGGTGGGGGTGGGG  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGTGTTTTTGTGAAATTGAAGGGGAAGTGGGTGGGGGTGGGG  597