BAC Information

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BAC

Clone NameB6Ng01-116C02
Chromosome2 (Build37)
Map Location 152,725,142 - 152,829,677
singlet/doubletdoublet
Overlap geneMylk2, Fkhl18, Dusp15, Ttll9
Upstream geneAngpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2
Downstream genePdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116C02.bB6Ng01-116C02.g
ACCDH921207DH921208
length1,0351,118
definitionDH921207|Mus musculus domesticus DNA, BAC clone: B6Ng01-116C02, 5' end.DH921208|Mus musculus domesticus DNA, BAC clone: B6Ng01-116C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,725,142 - 152,726,171)(152,828,549 - 152,829,677)
sequence
gaattccaggacaatttgttactaagttaaagccaacagttgctacagaa
aaggtgggcagaggcacgggccttgtgtttcctctgccttctgacatcca
ggtcggcagatgatgatggtgagcaatgcaaacagcgctgatgggttttg
ctcttttctttactgtcttgtatggcagaagctgagctctggccaagcca
tgacttgtatgttgtggttcaaatattgctgctcacttggggaaagtgtg
gttgcagagtcaggcagactggaagagatttaggtttattcggaaagatg
tcagcttagagatatcaattgcccgtctctctttagggggaaaaaaaaag
actggacagaggatgcttgcccttcctgatctcagggcccagcactgtgg
gcaagtggctgaacatgccgagaaccttggccaagggctctggcccagct
cgtttgggcttcgacagtattcttgggtcttctttcaggaccaagggtca
gagaagaagatctcagcatgtcagactgttaaacaatgaacgtgagaaac
agttggggccacactgttttcagtgtttggtggtgaggggagatgtctct
ccaggctcctgttgacttcctgacaggcacagggtacagaggaactgctg
tgttcctaggtgaaactgtagcccgcttatgtgtgaggtcagtctctccc
catcccttcctcctcttctccctcctcctttatagaaccacacttatatc
acactcatactttataaatactaattttaactgcagcatactactccatt
cagagtttgctttgtccctggtgaaaacgcttgctctgtgaaggattgtt
cagggttctacagacaacattatcctcatttccctccccttcatgcgtta
ggtttgtatcaactttaaatgaatatcttctcaccacttgcaggtccacc
ctcattaggaaaaatactagcttaaaaaatgggggggcaggatggtggtg
gcgcatgcctttattcccggcactcgggaaggctg
gaattcaggagttagggttcaggctggctggcccatctctacaacagcct
tctgtggtctgtgcaagctttggagacaatttcctggtttgaggggcaat
cacagaagctaccacatgccgtggtattgcgcatgaacaacccgcctaac
acatgcttcccatgggaggtcctctgtattcctgaatggagggagggaag
ccacgtggaaagtgggactccaaacgccagtctggtgccagatttacaaa
aaatatgaatatatgcattttttaaaactggaaggaaacaccagattgtt
aatgatggttgtgtctggatgtgttttaaattttccttctttagttttca
aatattctacaatgagtgtgaatttctataatcggggaattctttcacat
ttcacatactaccttgcagagtcctacagcctttaacttttctcatgata
atttgttctccacctgagtcttgaaatccccctccagaaactcagaaatt
tctcactataacaggcagggtcctaccaggagtatccaaccgtttgatgt
tgtgaccagacattgtcatctacaaagttcacacttgagaagtgagcaaa
aagttacacacacacacactgaataaaaaatctcataactgttttaagtg
agtatacgattttgtgttgggccacattcattgccacccttagctgcatt
cggttcccaggctgcaggttggacatgacacctgtaagatactactcatc
tttatgttatggatgaagaacagagaggtcaagttgctcacccaagtcac
acagctggtatgcttgctctgccaagggctggatcacactgctctgccaa
gcggccccagcccccctccacttcctatgatgtttctctcccactcactt
cctgtctggctcaacgtacctaggtgagtgtggtcacaaagttccccatt
cctgataggtcagaggcccatctctcggctgacagggcatcattccacat
gagatcgaagccccgactcttcttctctttctgtgagcctgggatgcaga
acggggaaaagcatgcagtcgtgaggctctaagacttgtccacaaaacta
gtggcagatctgcattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152725142_152726171
seq2: B6Ng01-116C02.b_44_1078

seq1  GAATTCCAGGACAATTTGTTACTAAGTTAAAGCCAACAGTTGCTACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAATTTGTTACTAAGTTAAAGCCAACAGTTGCTACAGAA  50

seq1  AAGGTGGGCAGAGGCACGGGCCTTGTGTTTCCTCTGCCTTCTGACATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGCAGAGGCACGGGCCTTGTGTTTCCTCTGCCTTCTGACATCCA  100

seq1  GGTCGGCAGATGATGATGGTGAGCAATGCAAACAGCGCTGATGGGTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGCAGATGATGATGGTGAGCAATGCAAACAGCGCTGATGGGTTTTG  150

seq1  CTCTTTTCTTTACTGTCTTGTATGGCAGAAGCTGAGCTCTGGCCAAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTTTACTGTCTTGTATGGCAGAAGCTGAGCTCTGGCCAAGCCA  200

seq1  TGACTTGTATGTTGTGGTTCAAATATTGCTGCTCACTTGGGGAAAGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGTATGTTGTGGTTCAAATATTGCTGCTCACTTGGGGAAAGTGTG  250

seq1  GTTGCAGAGTCAGGCAGACTGGAAGAGATTTAGGTTTATTCGGAAAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGAGTCAGGCAGACTGGAAGAGATTTAGGTTTATTCGGAAAGATG  300

seq1  TCAGCTTAGAGATATCAATTGCCCGTCTCTCTTTAGGGGGAAAAAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTAGAGATATCAATTGCCCGTCTCTCTTTAGGGGGAAAAAAAAAG  350

seq1  ACTGGACAGAGGATGCTTGCCCTTCCTGATCTCAGGGCCCAGCACTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACAGAGGATGCTTGCCCTTCCTGATCTCAGGGCCCAGCACTGTGG  400

seq1  GCAAGTGGCTGAACATGCCGAGAACCTTGGCCAAGGGCTCTGGCCCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGGCTGAACATGCCGAGAACCTTGGCCAAGGGCTCTGGCCCAGCT  450

seq1  CGTTTGGGCTTCGACAGTATTCTTGGGTCTTCTTTCAGGACCAAGGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGGGCTTCGACAGTATTCTTGGGTCTTCTTTCAGGACCAAGGGTCA  500

seq1  GAGAAGAAGATCTCAGCATGTCAGACTGTTAAACAATGAACGTGAGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAAGATCTCAGCATGTCAGACTGTTAAACAATGAACGTGAGAAAC  550

seq1  AGTTGGGGCCACACTGTTTTCAGTGTTTGGTGGTGAGGGGAGATGTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGCCACACTGTTTTCAGTGTTTGGTGGTGAGGGGAGATGTCTCT  600

seq1  CCAGGCTCCTGTTGACTTCCTGACAGGCACAGGGTACAGAGGAACTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCCTGTTGACTTCCTGACAGGCACAGGGTACAGAGGAACTGCTG  650

seq1  TGTTCCTAGGTGAAACTGTAGCCCGCTTATGTGTGAGGTCAGTCTCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTAGGTGAAACTGTAGCCCGCTTATGTGTGAGGTCAGTCTCTCCC  700

seq1  CATCCCTTCCTCCTCTTCTCCCTCCTCCTTTATAGAACCACACTTATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTTCCTCCTCTTCTCCCTCCTCCTTTATAGAACCACACTTATATC  750

seq1  ACACTCATACTTTATAAATACTAATTTTAACTGCAGCATACTACTCCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATACTTTATAAATACTAATTTTAACTGCAGCATACTACTCCATT  800

seq1  CAGAGTTTGC-TTGTCCCTGGTGAAAACGCTTGCTCTGTGAAGGATTGTT  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTGCTTTGTCCCTGGTGAAAACGCTTGCTCTGTGAAGGATTGTT  850

seq1  CAGGGTTCTACAGACAACATTATCCTCATTTCCCTCCCCTTCATGCGTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTCTACAGACAACATTATCCTCATTTCCCTCCCCTTCATGCGTTA  900

seq1  GGTTTGTATCAACTTTAAATGAATATCTTCTCACCACTTGCAGGTCCA-C  948
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGTTTGTATCAACTTTAAATGAATATCTTCTCACCACTTGCAGGTCCACC  950

seq1  CTCATTAGTAAAAATACTAGCTTAAAAAAAGGGGGGGCA-GAT-GTGGTG  996
      |||||||| |||||||||||||||||||| ||||||||| ||| ||||||
seq2  CTCATTAGGAAAAATACTAGCTTAAAAAATGGGGGGGCAGGATGGTGGTG  1000

seq1  GCGCATGCCTTTATTCCCGGCACTCGGG-AGGCTG  1030
      |||||||||||||||||||||||||||| ||||||
seq2  GCGCATGCCTTTATTCCCGGCACTCGGGAAGGCTG  1035

seq1: chr2_152828549_152829677
seq2: B6Ng01-116C02.g_67_1184 (reverse)

seq1  CCAATGCAGATCTGCCACTTGGTTTTGGTGGGACAGGTCTTTGAGCCTCA  50
      |||||||||||||||||| | ||||||   ||||| ||||| ||||||||
seq2  CCAATGCAGATCTGCCAC-TAGTTTTG--TGGACAAGTCTTAGAGCCTCA  47

seq1  CCGACTGCATGCTATCTCCCCG-TCTGCATCCCCAGGCTCACAGGAAAGG  99
       |||||||||||| | |||||| ||||||| |||||||||||||  || |
seq2  -CGACTGCATGCT-TTTCCCCGTTCTGCAT-CCCAGGCTCACAG--AAAG  92

seq1  AGAAG-AGAGTCGGGGGCTTCGATCTCATGTGGAATGATGGCCCTGTCAG  148
      ||||| |||||| |||||||||||||||||||||||||| ||||||||||
seq2  AGAAGAAGAGTC-GGGGCTTCGATCTCATGTGGAATGAT-GCCCTGTCAG  140

seq1  CCGAGAGGATGGGCCTTCTGACCTATCAGGGATGGGGAACTTTGTGACCA  198
      |||||| |||||||| |||||||||||||| |||||||||||||||||| 
seq2  CCGAGA-GATGGGCC-TCTGACCTATCAGGAATGGGGAACTTTGTGACC-  187

seq1  ACACTCACCTAGGTACGTTGAGCCAGACAGGAAGTGAGTGGGAGAGAAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACCTAGGTACGTTGAGCCAGACAGGAAGTGAGTGGGAGAGAAAC  237

seq1  ATCATAGGAAGTGGAGGGGGGCTGGGGCCGCTTGGCAGAGCAGTGTGATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGGAAGTGGAGGGGGGCTGGGGCCGCTTGGCAGAGCAGTGTGATC  287

seq1  CAGCCCTTGGCAGAGCAAGCATACCAGCTGTGTGACTTGGGTGAGCAACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTTGGCAGAGCAAGCATACCAGCTGTGTGACTTGGGTGAGCAACT  337

seq1  TGACCTCTCTGTTCTTCATCCATAACATAAAGATGAGTAGTATCTTACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCTCTGTTCTTCATCCATAACATAAAGATGAGTAGTATCTTACAG  387

seq1  GTGTCATGTCCAACCTGCAGCCTGGGAACCGAATGCAGCTAAGGGTGGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATGTCCAACCTGCAGCCTGGGAACCGAATGCAGCTAAGGGTGGCA  437

seq1  ATGAATGTGGCCCAACACAAAATCGTATACTCACTTAAAACAGTTATGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTGGCCCAACACAAAATCGTATACTCACTTAAAACAGTTATGAG  487

seq1  ATTTTTTATTCAGTGTGTGTGTGTGTAACTTTTTGCTCACTTCTCAAGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATTCAGTGTGTGTGTGTGTAACTTTTTGCTCACTTCTCAAGTG  537

seq1  TGAACTTTGTAGATGACAATGTCTGGTCACAACATCAAACGGTTGGATAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTGTAGATGACAATGTCTGGTCACAACATCAAACGGTTGGATAC  587

seq1  TCCTGGTAGGACCCTGCCTGTTATAGTGAGAAATTTCTGAGTTTCTGGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTAGGACCCTGCCTGTTATAGTGAGAAATTTCTGAGTTTCTGGAG  637

seq1  GGGGATTTCAAGACTCAGGTGGAGAACAAATTATCATGAGAAAAGTTAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTTCAAGACTCAGGTGGAGAACAAATTATCATGAGAAAAGTTAAA  687

seq1  GGCTGTAGGACTCTGCAAGGTAGTATGTGAAATGTGAAAGAATTCCCCGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAGGACTCTGCAAGGTAGTATGTGAAATGTGAAAGAATTCCCCGA  737

seq1  TTATAGAAATTCACACTCATTGTAGAATATTTGAAAACTAAAGAAGGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAATTCACACTCATTGTAGAATATTTGAAAACTAAAGAAGGAAA  787

seq1  ATTTAAAACACATCCAGACACAACCATCATTAACAATCTGGTGTTTCCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAACACATCCAGACACAACCATCATTAACAATCTGGTGTTTCCTT  837

seq1  CCAGTTTTAAAAAATGCATATATTCATATTTTTTGTAAATCTGGCACCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTTAAAAAATGCATATATTCATATTTTTTGTAAATCTGGCACCAG  887

seq1  ACTGGCGTTTGGAGTCCCACTTTCCACGTGGCTTCCCTCCCTCCATTCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCGTTTGGAGTCCCACTTTCCACGTGGCTTCCCTCCCTCCATTCAG  937

seq1  GAATACAGAGGACCTCCCATGGGAAGCATGTGTTAGGCGGGTTGTTCATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGAGGACCTCCCATGGGAAGCATGTGTTAGGCGGGTTGTTCATG  987

seq1  CGCAATACCACGGCATGTGGTAGCTTCTGTGATTGCCCCTCAAACCAGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAATACCACGGCATGTGGTAGCTTCTGTGATTGCCCCTCAAACCAGGA  1037

seq1  AATTGTCTCCAAAGCTTGCACAGACCACAGAAGGCTGTTGTAGAGATGGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCTCCAAAGCTTGCACAGACCACAGAAGGCTGTTGTAGAGATGGG  1087

seq1  CCAGCCAGCCTGAACCCTAACTCCTGAATTC  1129
      |||||||||||||||||||||||||||||||
seq2  CCAGCCAGCCTGAACCCTAACTCCTGAATTC  1118