BAC Information

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BAC

Clone NameB6Ng01-116G04
Chromosome2 (Build37)13 (Build37)
Map Location 117,211,469 - 117,212,642113,813,954 - 113,814,058
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC433464, Tmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
Downstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116G04.bB6Ng01-116G04.g
ACCDH921396DH921397
length1,165947
definitionDH921396|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G04, 5' end.DH921397|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(117,211,469 - 117,212,642)(113,813,954 - 113,814,058)
sequence
gaattctatattcgtttgcatctgagatgcatagcagcctgatgtccctc
aagtagtgtccccttctgtgtttgaaagtcccctccctattaaaccctgt
actttgctggctagtttttgtttctgtttctttgcactttgttgctcttt
tctggggtctcctgtgtgatcagtgggttaaccttgaattgttttcttga
tatttttaagtcaaatctccctatctgtgatttggagatattcctagcat
ggggcaagtatttagtctgttgatccatgtgaagcgcttagcatcagccc
tgggaggctcaacagacctcctcatcctcactctgtttctaaacctcaag
tctttcagccctgactcttttgccccaccgctgcttatgacccagccagg
ccagggaggagggaacacatggctgattgaaactcctctgattccacatt
ctgatttgagctgctattcttagcctccttcacaccaaatgtttttcctg
gtactgcagagaggcactcgaaagttcaggctaaagttagaaagccgaat
ctgtgtctccagaagtccacccactcgccatctctggaagcagctctttg
gggctgacactgggacttcaagggttatctgcactgtgctgtctttatca
gcttttgccagagatgcactcctagcatccagtctctgcagtggtagggt
ccataacgaagcgtggatcagagttagttcacctcctctgctgcccttag
ctcagggactacctgtgcagacgcttgaatgccttgatttcaaactcatt
ttctccaaaggaagcaggcagcttgccatccacattgaagcctctggaac
acttcccttcaccaacttttgttgcctgccaatgtcaatgcccctggaag
cccgggttcctttagagggttcacggggaactctgcttgtccttagttct
tactttcctgggctcaaagaagtacttccctggcctcaaaaggaagtaac
tgttgtcacaggaccacttcccttcccttgagtgggagaaaccagcttat
gccttgtctgacttcagatttcagattgatcttctctatccacatgttgc
acattctgaccatgactattgcattcctgggatgccccattgctagagcc
cacaggcagcgaagg
gaattctcccttaaacgcatgatgactgtactaattcacacacacacaca
cacacacacacacacacacacacacacacacactcgcccctgacaatttc
tattcacaacataactaatgcatccctttctaggacagcatggagacatt
tctggtgataaaacaaagtgaatttagacacaaacattcagattagctga
ttgcttttgatctgagacaagaaatttagaggctattattcaagctaccc
ctggtgcccacttagggtaccccctcagctctaacttggaaaacaacaaa
caaaaatttgaaacatgcaaagccacaaggctgctagccaagatggtcag
tgaaaaatatagaaaattataaactaggaagatatgaggaaatagatgag
caataaacatggtaaatagaggttgagccggcccagcagacagtttagtc
tgaacactgttgctaaagtgtttttggctacacagtgtaaagccactgaa
tatcattctgtctgaaatactctctcatcttttagtaaacgctttcaagg
gaaatggctgaaaggtgaaggtgcacacataagaaaatttaagtgctgaa
gattatgtctcatggaagcagatgataaatgcataattaatataaaccat
cttcatttttatcctgtgctgtcaaggttactagtgactatgtaaaactc
aaaagcccgtataacccataaagatgaggctttcatctttaatttctgtg
tccagaaatgataatttaacattttagtaacaggggatcctttggtagca
ctcattaaaacatttttcatttatttcaaataactattttttggaataat
gtcacattttcagtttcggattccctagtacacagagcagaaaatgaacg
aaaatgctagatattgatttcacagtagaaggcaactttaacaccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_117211469_117212642
seq2: B6Ng01-116G04.b_45_1209

seq1  GAATTCTATATTCGTTTGCATCTGAGATGCATAGCAGCCTGATGTCCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATTCGTTTGCATCTGAGATGCATAGCAGCCTGATGTCCCTC  50

seq1  AAGTAGTGTCCCCTTCTGTGTTTGAAAGTCCCCTCCCTATTAAACCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTGTCCCCTTCTGTGTTTGAAAGTCCCCTCCCTATTAAACCCTGT  100

seq1  ACTTTGCTGGCTAGTTTTTGTTTCTGTTTCTTTGCACTTTGTTGCTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTGGCTAGTTTTTGTTTCTGTTTCTTTGCACTTTGTTGCTCTTT  150

seq1  TCTGGGGTCTCCTGTGTGATCAGTGGGTTAACCTTGAATTGTTTTCTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGTCTCCTGTGTGATCAGTGGGTTAACCTTGAATTGTTTTCTTGA  200

seq1  TATTTTTAAGTCAAATCTCCCTATCTGTGATTTGGAGATATTCCTAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAGTCAAATCTCCCTATCTGTGATTTGGAGATATTCCTAGCAT  250

seq1  GGGGCAAGTATTTAGTCTGTTGATCCATGTGAAGCGCTTAGCATCAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAGTATTTAGTCTGTTGATCCATGTGAAGCGCTTAGCATCAGCCC  300

seq1  TGGGAGGCTCAACAGACCTCCTCATCCTCACTCTGTTTCTAAACCTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCTCAACAGACCTCCTCATCCTCACTCTGTTTCTAAACCTCAAG  350

seq1  TCTTTCAGCCCTGACTCTTTTGCCCCACCGCTGCTTATGACCCAGCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGCCCTGACTCTTTTGCCCCACCGCTGCTTATGACCCAGCCAGG  400

seq1  CCAGGGAGGAGGGAACACATGGCTGATTGAAACTCCTCTGATTCCACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGGAGGGAACACATGGCTGATTGAAACTCCTCTGATTCCACATT  450

seq1  CTGATTTGAGCTGCTATTCTTAGCCTCCTTCACACCAAATGTTTTTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTGAGCTGCTATTCTTAGCCTCCTTCACACCAAATGTTTTTCCTG  500

seq1  GTACTGCAGAGAGGCACTCGAAAGTTCAGGCTAAAGTTAGAAAGCCGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCAGAGAGGCACTCGAAAGTTCAGGCTAAAGTTAGAAAGCCGAAT  550

seq1  CTGTGTCTCCAGAAGTCCACCCACTCGCCATCTCTGGAAGCAGCTCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTCCAGAAGTCCACCCACTCGCCATCTCTGGAAGCAGCTCTTTG  600

seq1  GGGCTGACACTGGGACTTCAAGGGTTATCTGCACTGTGCTGTCTTTATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGACACTGGGACTTCAAGGGTTATCTGCACTGTGCTGTCTTTATCA  650

seq1  GCTTTTGCCAGAGATGCACTCCTAGCATCCAGTCTCTGCAGTGGTAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGCCAGAGATGCACTCCTAGCATCCAGTCTCTGCAGTGGTAGGGT  700

seq1  CCATAACGAAGCGTGGATCAGAGTTAGTTCACCTCCTCTGCTGCCCTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACGAAGCGTGGATCAGAGTTAGTTCACCTCCTCTGCTGCCCTTAG  750

seq1  CTCAGGGACTACCTGTGCAGACGCTTGAATGCCTTGATTTCAAACTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGACTACCTGTGCAGACGCTTGAATGCCTTGATTTCAAACTCATT  800

seq1  TTCTCCAAAGGAAGCAGGCAGCTTGCCATCCACATTGAAGCCTCTGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAAAGGAAGCAGGCAGCTTGCCATCCACATTGAAGCCTCTGGAAC  850

seq1  ACTTCCCTTCACCAACTTTTGTTGCCTGCCAAATGTCAATGCCCCTGGAA  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTTCCCTTCACCAACTTTTGTTGCCTGCC-AATGTCAATGCCCCTGGAA  899

seq1  GCCCGGGTTCCTTTAGAGGGTTCACGGGGAACTCTGCTTGTCCTTAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGTTCCTTTAGAGGGTTCACGGGGAACTCTGCTTGTCCTTAGTTC  949

seq1  TTACTTTCCTGGCCTCAAAAGGAAGTACTTCCCTGGCCTCAAAAGGAAGT  1000
      |||||||||||| ||||||  |||||||||||||||||||||||||||||
seq2  TTACTTTCCTGGGCTCAAA--GAAGTACTTCCCTGGCCTCAAAAGGAAGT  997

seq1  AACTGTTGTCACAAGGAACACTTCCCTTCCCTTGGAGTGGGAGAAAACCA  1050
      |||||||||||| |||| ||||||||||||||| ||||||||| ||||||
seq2  AACTGTTGTCAC-AGGACCACTTCCCTTCCCTT-GAGTGGGAG-AAACCA  1044

seq1  GC-TATGCCTTGTCTGACTTCAGATTTCAGAATTGATCTTTCTC-ATCCA  1098
      || ||||||||||||||||||||||||||| ||||||| ||||| |||||
seq2  GCTTATGCCTTGTCTGACTTCAGATTTCAG-ATTGATC-TTCTCTATCCA  1092

seq1  CATG-TGCACATCTGGAGCAATGACTATTGCATTCCTTGGAGAGCCCCAA  1147
      |||| |||||||   || | ||||||||||||||||| |||  ||||| |
seq2  CATGTTGCACATTCTGA-CCATGACTATTGCATTCCTGGGA-TGCCCC-A  1139

seq1  TTGCTAGACGCACA-AGGCAGCAGAAGG  1174
      |||||||| || || ||||||| |||||
seq2  TTGCTAGA-GCCCACAGGCAGC-GAAGG  1165

seq1: chr13_113813954_113814058
seq2: B6Ng01-116G04.g_103_403 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  CTAGCAGCCTTGTGGCTTTGCATGTTTCAAATTTTTGTTTGTTGTTTTCC  50

seq1  --------------------------------------------------  0
                                                        
seq2  AAGTTAGAGCTGAGGGGGTACCCTAAGTGGGCACCAGGGGTAGCTTGAAT  100

seq1  --------------------------------------------------  0
                                                        
seq2  AATAGCCTCTAAATTTCTTGTCTCAGATCAAAAGCAATCAGCTAATCTGA  150

seq1  --------------------------------------------------  0
                                                        
seq2  ATGTTTGTGTCTAAATTCACTTTGTTTTATCACCAGAAATGTCTCCATGC  200

seq1  ----CTAGCAA---ATCCTTGTG----GCTTTTACT--ATCTCCTCTGTA  37
          |||| ||   || | |  |    | | | | |  |  |  || |  
seq2  TGTCCTAGAAAGGGATGCATTAGTTATGTTGTGAATAGAAATTGTCAGGG  250

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCGTGCTTAAAC  87
      | | ||||||||||||||||||||||||||||||||||            
seq2  GCGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------------  288

seq1  TGAAGTGTTGTGTGTGTG  105
          ||| ||||||||||
seq2  ----GTG-TGTGTGTGTG  301