BAC Information

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BAC

Clone NameB6Ng01-116J02
Chromosome2 (Build37)
Map Location 145,680,026 - 145,807,217
singlet/doubletdoublet
Overlap geneRin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810
Downstream geneInsm1, A230067G21Rik, LOC668918, Gm114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116J02.bB6Ng01-116J02.g
ACCDH921533DH921534
length1,073354
definitionDH921533|Mus musculus domesticus DNA, BAC clone: B6Ng01-116J02, 5' end.DH921534|Mus musculus domesticus DNA, BAC clone: B6Ng01-116J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,806,147 - 145,807,217)(145,680,026 - 145,680,379)
sequence
gaattcagggctggcagtgcagcagctcagtagctgagtgcttgcctggt
atgcacaaagcctgggatcaatccagaacacaagtcatttcaaatttaaa
acaatgacaattctgacggacataaatcttggctgacatattaaacttca
tatgaatattacacagagcgactgactttgcgaccaccttcaggtttact
atggtcatatcatagccgtgcagccttggccgtgaggcatcgaagagccc
acaggccacaaggaaaggaaaggcagtgggagagagggacccgatgctga
tgataagaactggagatagagactggtcaggaagaccagcatgcccacag
cagtggtccctataaaggctgcaatgtggggacacagttccgggtcctct
tattttgtcatctcccaagagcaccgctgcctagaggctgtctttggtag
catctgagaagaggcagcaggacgcctggttgggccaaacagactcacca
tttaaacaaagccactaaggtgagcctgaagagggcattgcacatgacca
gcagggagtgcaaaccataagaagacataggaagcagatggccgtaggcg
agccaaggagaggggcctcagaaggaacctgtgagggaccctgatctcag
cagacttcaggccttggaacggggagataaatttctgttgtttaacttgt
taccacggaaatctgggagaaaccagtgacagagacacttcttgtttcta
atgctgtgttattaagacaaaatcctggggagctcccagtttagagaaca
gaggcacaggctgcacacacaggacaggagctgtgctgtgttctgcacac
aagactctcgtactgtctgaaatctgtgtttagaaccaagtaagaatgga
atcagggaaagttggagctttagggagacaggcagaaactcggggaggtt
tattagacaaatagtgcgttaatgccgtctccggtttgggggtttgtttt
gttttcttttttttttttttcttttgcctccagtacatacaaagggaatc
agaattccagcccaaggatggga
atcatggtgggttcccacacagaacgtgtctggtgtgcacggacaaaaga
atccacagtgagtgggcacccaacttgcagtgttggatgagctcaatgga
aaggacagttgagaaaagaagtagtgactgccacccatcagcagctggga
cattgccagcacagtacagagaaacaactgcctctcacactcaattgtac
cccagcatcaattgtaactctgttaagagggtctcaaaaggtctgggctg
tgccacattctgcatgtccagtaagcccccaggtgatactgatattgcta
ctgggcttggaccgtacttctgtttttgttgttgttgtggtggtggttgt
tgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_145806147_145807217
seq2: B6Ng01-116J02.b_42_1114 (reverse)

seq1  TCCCAT-CTTGGGCTGGAAATACTGAGTTCACTTTGTATGTACTGGAGCC  49
      |||||| |||||||||| ||| |||| ||| ||||||||||||||||| |
seq2  TCCCATCCTTGGGCTGG-AATTCTGA-TTCCCTTTGTATGTACTGGAGGC  48

seq1  AAAAGAAAAAAAAAAAAAAGAAAACAAAACAAAACCCCCAAACCGGAGAC  99
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAAGAAAAAAAAAAAAAAGAAAACAAAAC-AAACCCCCAAACCGGAGAC  97

seq1  CGCATTAACGCACTA-TTGTCTAATAAACCT-CCCGAGTCTCTGCCTGTC  147
       |||||||||||||| ||||||||||||||| ||||||| ||||||||||
seq2  GGCATTAACGCACTATTTGTCTAATAAACCTCCCCGAGTTTCTGCCTGTC  147

seq1  TCCCTAAGGCTCC-ACTTTCCCTGATTCCATTCTTACTTGGTTCTAAACA  196
      ||||||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAAGCTCCAACTTTCCCTGATTCCATTCTTACTTGGTTCTAAACA  197

seq1  CAGATTTCAGACAGTACGAGAGTCTTGTGTGCAGAACACAGCACAGCTCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCAGACAGTACGAGAGTCTTGTGTGCAGAACACAGCACAGCTCC  247

seq1  TGTCCTGTGTGTGCAGCCTGTGCCTCTGTTCTCT-AACTGGGAGCTCCCC  295
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTCCTGTGTGTGCAGCCTGTGCCTCTGTTCTCTAAACTGGGAGCTCCCC  297

seq1  AGGATTTTGTCTTAATAACACAGCATTAGAAACAAGAAGTGTCTCTGTCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTGTCTTAATAACACAGCATTAGAAACAAGAAGTGTCTCTGTCA  347

seq1  CTGGTTTCTCCCAGATTTCCGTGGTAACAAGTTAAACAACAGAAATTTAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCTCCCAGATTTCCGTGGTAACAAGTTAAACAACAGAAATTTAT  397

seq1  CTCCCCGTTCCAAGGCCTGAAGTCTGCTGAGATCAGGGTCCCTCACAGGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCGTTCCAAGGCCTGAAGTCTGCTGAGATCAGGGTCCCTCACAGGT  447

seq1  TCCTTCTGAGGCCCCTCTCCTTGGCTCGCCTACGGCCATCTGCTTCCTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGAGGCCCCTCTCCTTGGCTCGCCTACGGCCATCTGCTTCCTAT  497

seq1  GTCTTCTTATGGTTTGCACTCCCTGCTGGTCATGTGCAATGCCCTCTTCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTATGGTTTGCACTCCCTGCTGGTCATGTGCAATGCCCTCTTCA  547

seq1  GGCTCACCTTAGTGGCTTTGTTTAAATGGTGAGTCTGTTTGGCCCAACCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACCTTAGTGGCTTTGTTTAAATGGTGAGTCTGTTTGGCCCAACCA  597

seq1  GGCGTCCTGCTGCCTCTTCTCAGATGCTACCAAAGACAGCCTCTAGGCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTCCTGCTGCCTCTTCTCAGATGCTACCAAAGACAGCCTCTAGGCAG  647

seq1  CGGTGCTCTTGGGAGATGACAAAATAAGAGGACCCGGAACTGTGTCCCCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCTCTTGGGAGATGACAAAATAAGAGGACCCGGAACTGTGTCCCCA  697

seq1  CATTGCAGCCTTTATAGGGACCACTGCTGTGGGCATGCTGGTCTTCCTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAGCCTTTATAGGGACCACTGCTGTGGGCATGCTGGTCTTCCTGA  747

seq1  CCAGTCTCTATCTCCAGTTCTTATCATCAGCATCGGGTCCCTCTCTCCCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCTATCTCCAGTTCTTATCATCAGCATCGGGTCCCTCTCTCCCA  797

seq1  CTGCCTTTCCTTTCCTTGTGGCCTGTGGGCTCTTCGATGCCTCACGGCCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTCCTTTCCTTGTGGCCTGTGGGCTCTTCGATGCCTCACGGCCA  847

seq1  AGGCTGCACGGCTATGATATGACCATAGTAAACCTGAAGGTGGTCGCAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCACGGCTATGATATGACCATAGTAAACCTGAAGGTGGTCGCAAA  897

seq1  GTCAGTCGCTCTGTGTAATATTCATATGAAGTTTAATATGTCAGCCAAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCGCTCTGTGTAATATTCATATGAAGTTTAATATGTCAGCCAAGA  947

seq1  TTTATGTCCGTCAGAATTGTCATTGTTTTAAATTTGAAATGACTTGTGTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCCGTCAGAATTGTCATTGTTTTAAATTTGAAATGACTTGTGTT  997

seq1  CTGGATTGATCCCAGGCTTTGTGCATACCAGGCAAGCACTCAGCTACTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTGATCCCAGGCTTTGTGCATACCAGGCAAGCACTCAGCTACTGA  1047

seq1  GCTGCTGCACTGCCAGCCCTGAATTC  1071
      ||||||||||||||||||||||||||
seq2  GCTGCTGCACTGCCAGCCCTGAATTC  1073

seq1: chr2_145680026_145680379
seq2: B6Ng01-116J02.g_79_432

seq1  ATCATGGTGGGTTCCCACACAGAACGTGTCTGGTGTGCACGGACAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTGGGTTCCCACACAGAACGTGTCTGGTGTGCACGGACAAAAGA  50

seq1  ATCCACAGTGAGTGGGCACCCAACTTGCAGTGTTGGATGAGCTCAATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAGTGAGTGGGCACCCAACTTGCAGTGTTGGATGAGCTCAATGGA  100

seq1  AAGGACAGTTGAGAAAAGAAGTAGTGACTGCCACCCATCAGCAGCTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGTTGAGAAAAGAAGTAGTGACTGCCACCCATCAGCAGCTGGGA  150

seq1  CATTGCCAGCACAGTACAGAGAAACAACTGCCTCTCACACTCAATTGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCAGCACAGTACAGAGAAACAACTGCCTCTCACACTCAATTGTAC  200

seq1  CCCAGCATCAATTGTAACTCTGTTAAGAGGGTCTCAAAAGGTCTGGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATCAATTGTAACTCTGTTAAGAGGGTCTCAAAAGGTCTGGGCTG  250

seq1  TGCCACATTCTGCATGTCCAGTAAGCCCCCAGGTGATACTGATATTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATTCTGCATGTCCAGTAAGCCCCCAGGTGATACTGATATTGCTA  300

seq1  CTGGGCTTGGACCGTACTTCTGTTTTTGTTGTTGTTGTGGTGGTGGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTGGACCGTACTTCTGTTTTTGTTGTTGTTGTGGTGGTGGTTGT  350

seq1  TGTT  354
      ||||
seq2  TGTT  354