BAC Information

Click to search

BAC

Clone NameB6Ng01-116N10
Chromosome2 (Build37)
Map Location 101,795,785 - 101,945,827
singlet/doubletdoublet
Overlap geneLdlrad3
Upstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9
Downstream geneLOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116N10.bB6Ng01-116N10.g
ACCDH921736DH921737
length1,1161,162
definitionDH921736|Mus musculus domesticus DNA, BAC clone: B6Ng01-116N10, 5' end.DH921737|Mus musculus domesticus DNA, BAC clone: B6Ng01-116N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,944,700 - 101,945,827)(101,795,785 - 101,796,938)
sequence
gaattccacaggcttctgaaggagttggacttctgacaacagaagtggcc
ctcagagtggcccagagactgattgtggtttcatgctgacccatgtgtat
actcttgtgtgttctttctttcctacttgtgttattttgctgtgtgtttt
taaatacctctggtaactcagtcacgtccagacccttgggttcttccatc
ccaaaggtgaaatcatatatcctatagttcagaacagggctttagggcca
gaccatgctgggttctcacagtccccgacgccctcagtgctactatactt
ttctcagcacatacttccttggctataagataagggactgtctccgcacc
ttcaccagagggcatgttcaaatcattcattgcatgatgtaatcagaaag
aagctgatcttatccaataggtattgtgcctcgggcaacagtatactatc
cacctctgaacaagcagaaaattgcgtgaggtctctatctgcccagcatg
gtatggtcggctgcagcctccacatgcccggtccctcaccttcctacact
ccagtaagcgaggctctgccacagaaactgttttatttcctggctcaata
tctttttgtttgagggagtctttagccagccaatgtcaaaatgtccttca
gcttatctctctagagagccagctggatacccaagctggtgccagaggga
aaaagaacaaatctttgcagacctgagttgagtgtggctcttggtggagc
ctcctctgcattcttcccagagtctcagcctcagtgaacctgcagtgaac
ctggagttggtccccaactgccagagtggctgtggttggcttgtcctcag
agctgagcatacctatgtggatttgtctggttgtgttccgttttgtgacc
tgtagccttctccagtacctgtgcatagagacctttcacttcatacactg
gcctgaaaccatttaaacttgatgcagacgctcctctccctcttccccac
gcttgcattttaatacttgtcagccgcatgaagaaagattcttgatctga
tgttagattcctcattctaggtaggactgcagtcagatataggaacaaat
caggttgtccgacttc
gaattctgggaacttttcagagggttacagaaatgctaggtccccgagag
ttggggtgggcacttgttggtttttcaggggtgttggttgcagtttgtta
ctagttacgctgagaaagggcggagaaagttaagagcatcccgccccagg
tcatcagggagatgcaatacgcgcgtgactgttgagcatagtacccgccg
acaagggtttgcactcagcaatgctagctctttaaaaagaaatattgctt
taaaatggccacgatgaaatgtacacaccacaaacagcattttaagtaca
cagttcagtagcactaagcaaattcagcttgttgggcaaacatcactgct
gtccgtctccagcacttgctcctgcatttttgatgtcctcaacatccatc
tctgacaagtgatcagggacccctgttgggggctgggctggcgaggggta
gatttccacagggaaagtaaatgtgtccagagattgcaaaactctgacat
ctgtgtgaccattggcagcattactaatacaagagggagctctttaagga
ggggagagcaatggctttggtatctggaggatctcactgtcgtggctgaa
agctggctctccccagcactgccactttggcagtctcgaagcagcaatca
gacccactcagggagttatgatgccacataactcagagctgcctgcgctc
gtctttttgctctgtgtgtaaaatgtcatcttgcattaatttcattaact
aggcccacttttcttaagagctttatgagcctgctggccaaattactaac
atcagagtcgcctgcgacctgcgtttcaagtgtgtgatccacggataatg
aagtttccatttatcctggctgtccctcagcgaatgccctccccgctcta
ccgtcaacatcttagattccacccctatctgcttttgctccgcattaatt
ctcctgctgctactggccttctctggacctaacagcagtcagggtcccaa
cagtgtgctgctgcagggcaagctgtgcttgcaccatacctggggtgctc
tgccctccaggacgggaaatctgaacactttaacaatgacagcctttcct
agcttggggtcctggagaagaaccctttcgacttagtccagggcttgccc
ttcaggctgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101944700_101945827
seq2: B6Ng01-116N10.b_48_1163 (reverse)

seq1  GAAGTCTGACAACCTGGATTTGTTCCTATATAGGTGACTGGCAGGTCCTA  50
      |||||| |||||||| |||||||||||||||   ||||| ||| ||||||
seq2  GAAGTCGGACAACCT-GATTTGTTCCTATAT--CTGACT-GCA-GTCCTA  45

seq1  CCTAGGAATGAGGGATTCTAACATCAGAACCAAGAATCTTTTCTCATGGC  100
      |||| |||||| ||| ||||||||||| | |||||||||||  |||| ||
seq2  CCTA-GAATGA-GGAATCTAACATCAG-ATCAAGAATCTTTCTTCAT-GC  91

seq1  GGCTGTACAGGTA-TAAAATGCAAGCGTGGGGGAAGAGGGAGAGGAGCGT  149
      ||||| ||| ||| |||||||||||||| |||||||||||||||||||||
seq2  GGCTG-ACAAGTATTAAAATGCAAGCGT-GGGGAAGAGGGAGAGGAGCGT  139

seq1  CTGCATCAAGTTTTAAAATGGTTTCAGGCCAGTGTATGAAGTGAAAGGTC  199
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  CTGCATCAAGTTT--AAATGGTTTCAGGCCAGTGTATGAAGTGAAAGGTC  187

seq1  TCTATGCACAGGTACTGGAGAAGGCTACAGGTCACAAAACGGAACACAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCACAGGTACTGGAGAAGGCTACAGGTCACAAAACGGAACACAAC  237

seq1  CAGACAAATCCACATAGGTATGCTCAGCTCTGAGGACAAGCCAACCACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAATCCACATAGGTATGCTCAGCTCTGAGGACAAGCCAACCACAG  287

seq1  CCACTCTGGCAGTTGGGGACCAACTCCAGGTTCACTGCAGGTTCACTGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGGCAGTTGGGGACCAACTCCAGGTTCACTGCAGGTTCACTGAG  337

seq1  GCTGAGACTCTGGGAAGAATGCAGAGGAGGCTCCACCAAGAGCCACACTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACTCTGGGAAGAATGCAGAGGAGGCTCCACCAAGAGCCACACTC  387

seq1  AACTCAGGTCTGCAAAGATTTGTTCTTTTTCCCTCTGGCACCAGCTTGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGTCTGCAAAGATTTGTTCTTTTTCCCTCTGGCACCAGCTTGGG  437

seq1  TATCCAGCTGGCTCTCTAGAGAGATAAGCTGAAGGACATTTTGACATTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGCTGGCTCTCTAGAGAGATAAGCTGAAGGACATTTTGACATTGG  487

seq1  CTGGCTAAAGACTCCCTCAAACAAAAAGATATTGAGCCAGGAAATAAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAAAGACTCCCTCAAACAAAAAGATATTGAGCCAGGAAATAAAAC  537

seq1  AGTTTCTGTGGCAGAGCCTCGCTTACTGGAGTGTAGGAAGGTGAGGGACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGTGGCAGAGCCTCGCTTACTGGAGTGTAGGAAGGTGAGGGACC  587

seq1  GGGCATGTGGAGGCTGCAGCCGACCATACCATGCTGGGCAGATAGAGACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGTGGAGGCTGCAGCCGACCATACCATGCTGGGCAGATAGAGACC  637

seq1  TCACGCAATTTTCTGCTTGTTCAGAGGTGGATAGTATACTGTTGCCCGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCAATTTTCTGCTTGTTCAGAGGTGGATAGTATACTGTTGCCCGAG  687

seq1  GCACAATACCTATTGGATAAGATCAGCTTCTTTCTGATTACATCATGCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATACCTATTGGATAAGATCAGCTTCTTTCTGATTACATCATGCAA  737

seq1  TGAATGATTTGAACATGCCCTCTGGTGAAGGTGCGGAGACAGTCCCTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGATTTGAACATGCCCTCTGGTGAAGGTGCGGAGACAGTCCCTTAT  787

seq1  CTTATAGCCAAGGAAGTATGTGCTGAGAAAAGTATAGTAGCACTGAGGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGCCAAGGAAGTATGTGCTGAGAAAAGTATAGTAGCACTGAGGGC  837

seq1  GTCGGGGACTGTGAGAACCCAGCATGGTCTGGCCCTAAAGCCCTGTTCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGGACTGTGAGAACCCAGCATGGTCTGGCCCTAAAGCCCTGTTCTG  887

seq1  AACTATAGGATATATGATTTCACCTTTGGGATGGAAGAACCCAAGGGTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAGGATATATGATTTCACCTTTGGGATGGAAGAACCCAAGGGTCT  937

seq1  GGACGTGACTGAGTTACCAGAGGTATTTAAAAACACACAGCAAAATAACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTGACTGAGTTACCAGAGGTATTTAAAAACACACAGCAAAATAACA  987

seq1  CAAGTAGGAAAGAAAGAACACACAAGAGTATACACATGGGTCAGCATGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGGAAAGAAAGAACACACAAGAGTATACACATGGGTCAGCATGAA  1037

seq1  ACCACAATCAGTCTCTGGGCCACTCTGAGGGCCACTTCTGTTGTCAGAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAATCAGTCTCTGGGCCACTCTGAGGGCCACTTCTGTTGTCAGAAG  1087

seq1  TCCAACTCCTTCAGAAGCCTGTGGAATTC  1128
      |||||||||||||||||||||||||||||
seq2  TCCAACTCCTTCAGAAGCCTGTGGAATTC  1116

seq1: chr2_101795785_101796938
seq2: B6Ng01-116N10.g_69_1230

seq1  GAATTCTGGGAACTTTTCAGAGGGTTACAGAAATGCTAGGTCCCCGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAACTTTTCAGAGGGTTACAGAAATGCTAGGTCCCCGAGAG  50

seq1  TTGGGGTGGGCACTTGTTGGTTTTTCAGGGGTGTTGGTTGCAGTTTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTGGGCACTTGTTGGTTTTTCAGGGGTGTTGGTTGCAGTTTGTTA  100

seq1  CTAGTTACGCTGAGAAAGGGCGGAGAAAGTTAAGAGCATCCCGCCCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTACGCTGAGAAAGGGCGGAGAAAGTTAAGAGCATCCCGCCCCAGG  150

seq1  TCATCAGGGAGATGCAATACGCGCGTGACTGTTGAGCATAGTACCCGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGGGAGATGCAATACGCGCGTGACTGTTGAGCATAGTACCCGCCG  200

seq1  ACAAGGGTTTGCACTCAGCAATGCTAGCTCTTTAAAAAGAAATATTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGTTTGCACTCAGCAATGCTAGCTCTTTAAAAAGAAATATTGCTT  250

seq1  TAAAATGGCCACGATGAAATGTACACACCACAAACAGCATTTTAAGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGCCACGATGAAATGTACACACCACAAACAGCATTTTAAGTACA  300

seq1  CAGTTCAGTAGCACTAAGCAAATTCAGCTTGTTGGGCAAACATCACTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGTAGCACTAAGCAAATTCAGCTTGTTGGGCAAACATCACTGCT  350

seq1  GTCCGTCTCCAGCACTTGCTCCTGCATTTTTGATGTCCTCAACATCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTCTCCAGCACTTGCTCCTGCATTTTTGATGTCCTCAACATCCATC  400

seq1  TCTGACAAGTGATCAGGGACCCCTGTTGGGGGCTGGGCTGGCGAGGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAGTGATCAGGGACCCCTGTTGGGGGCTGGGCTGGCGAGGGGTA  450

seq1  GATTTCCACAGGGAAAGTAAATGTGTCCAGAGATTGCAAAACTCTGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCACAGGGAAAGTAAATGTGTCCAGAGATTGCAAAACTCTGACAT  500

seq1  CTGTGTGACCATTGGCAGCATTACTAATACAAGAGGGAGCTCTTTAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGACCATTGGCAGCATTACTAATACAAGAGGGAGCTCTTTAAGGA  550

seq1  GGGGAGAGCAATGGCTTTGGTATCTGGAGGATCTCACTGTCGTGGCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAGCAATGGCTTTGGTATCTGGAGGATCTCACTGTCGTGGCTGAA  600

seq1  AGCTGGCTCTCCCCAGCACTGCCACTTTGGCAGTCTCGAAGCAGCAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTCTCCCCAGCACTGCCACTTTGGCAGTCTCGAAGCAGCAATCA  650

seq1  GACCCACTCAGGGAGTTATGATGCCACATAACTCAGAGCTGCCTGCGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACTCAGGGAGTTATGATGCCACATAACTCAGAGCTGCCTGCGCTC  700

seq1  GTCTTTTTGCTCTGTGTGTAAAATGTCATCTTGCATTAA-TTCATTAACT  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTCTTTTTGCTCTGTGTGTAAAATGTCATCTTGCATTAATTTCATTAACT  750

seq1  AGGCCCACTTTTCTTAAGAGCTTAATGAGCCTGCTGGCCAAATTACTAAC  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGCCCACTTTTCTTAAGAGCTTTATGAGCCTGCTGGCCAAATTACTAAC  800

seq1  ATCAGAGTCGCCTGCGACCTGCGTTCCAAGTGTGTGATCCACGGATAATG  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATCAGAGTCGCCTGCGACCTGCGTTTCAAGTGTGTGATCCACGGATAATG  850

seq1  AAGTTTCCATTTATCCTGGCTGTCCCTCAAGCGAATGCCCTCCCCGCTCT  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGTTTCCATTTATCCTGGCTGTCCCTC-AGCGAATGCCCTCCCCGCTCT  899

seq1  ACCGTCAAACATCTTAGATTCCACCCCTATCTGCTTTTGCTCCGCATTAA  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTC-AACATCTTAGATTCCACCCCTATCTGCTTTTGCTCCGCATTAA  948

seq1  TTCTCCTGCTGCTACTGGCCATCTCTGGA-CTCACAGCAGTCAGGGTCCC  998
      |||||||||||||||||||| |||||||| || |||||||||||||||||
seq2  TTCTCCTGCTGCTACTGGCCTTCTCTGGACCTAACAGCAGTCAGGGTCCC  998

seq1  -ACAGTG-GCTGCTGCAGGGGCAAGCTGTGCTTTGCACCATACCT-GGGT  1045
       |||||| ||||||||| ||||||||||||| ||||||||||||| ||||
seq2  AACAGTGTGCTGCTGCA-GGGCAAGCTGTGC-TTGCACCATACCTGGGGT  1046

seq1  GCTCTGCCC-CCAGGAC-GGAAATCTGAACAC-TTAACAATGACAGC--T  1090
      ||||||||| ||||||| |||||||||||||| ||||||||||||||  |
seq2  GCTCTGCCCTCCAGGACGGGAAATCTGAACACTTTAACAATGACAGCCTT  1096

seq1  TTCTAGC-TAGTGTCCTGGAGAAGAAACACCTTCGACTAAGTC--AGGCA  1137
      | ||||| | | |||||||||||| ||| | ||||||| ||||   ||| 
seq2  TCCTAGCTTGGGGTCCTGGAGAAG-AACCCTTTCGACTTAGTCCAGGGCT  1145

seq1  TGCCATCCAGGCTGCTG  1154
      |||| | ||||||||||
seq2  TGCCCTTCAGGCTGCTG  1162