BAC Information

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BAC

Clone NameB6Ng01-116O16
Chromosome2 (Build37)
Map Location 25,934,476 - 25,934,639
singlet/doubletsinglet
Overlap geneBtbd14a
Upstream geneEntpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1
Downstream geneC330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116O16.bB6Ng01-116O16.g
ACCDH921794DH921795
length9141,155
definitionDH921794|Mus musculus domesticus DNA, BAC clone: B6Ng01-116O16, 5' end.DH921795|Mus musculus domesticus DNA, BAC clone: B6Ng01-116O16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtatcggatgatttcaagctttgagggtatcaaagacttgcct
ttgaattttctccaaagttcttattacttgatatgtttaagttctgataa
tgtcactaaaaaaaaaagattcttttttttaacttatatatatctgtata
tacttgtgtgtaggtatgtatacatgagtgcagatgcctgtggaggccaa
aggagggcactggatgccctgaagctagagctacaagtagttgtgagctg
cctgatataggtgctgggaactgaacttgggtcttccaccaaaacagcaa
gtgtgccatctttccagttccataatgttactttttaaaagaacattggt
gtactactttatcattatagaattttcttctatcgcctaatgactgggta
aataaaaagtactttattgctacaatggattgttattcagcaacaaaaag
gttttttggttttttttttttttttttttgttgttgttgttttcgagaca
gggtttctctgcgtagctctggctgtcctggaactcactttgtagaccag
gctggcctcaaactcagaaatccacctgcctctgcctcctgagtgctggg
attaaaggcgtgcgccaccacgcctgacaacaaaaagtattttaaaagtc
caatattgaggaactttaaaaatataaatgaaaaagccaatcataaaaat
tccactaacttaaaatacccagaatctataactctctaggcagaaagatt
agtggttgcttaaggctaagaagttcatgatggtggctaagaggtatgcg
cttgctctttgaaataatgaaaacactctaaaattgatgttttaatatgg
gtatacagttttgtaagtaaactaaaaaccactgaattgtatacacaagc
tgagtattttataa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctagacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaaagtacccaagagctaagggatcttcaaccctata
gtgaacaacattatgactaacagtcccctgagcttctgacctctagctgc
aatgtatcaaagatgctagtccgcatacttgaaagaagcaatgaaaccaa
ctttgttgtccccggttacgggaacgtccaggccaagtggtgtgggtgtg
atacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_25934476_25934639
seq2: B6Ng01-116O16.b_508_672 (reverse)

seq1  GGCGTGGTGGCGCACGCCTTTAGTCCCAGCACTTGGGAGTCAGAGGCAGG  50
      |||||||||||||||||||||| ||||||||||  |||| ||||||||||
seq2  GGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGG  50

seq1  CGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGAC  100
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGAC  100

seq1  AGCCAGGACTATACAGAGAAACCCTGTCTCGAAAAAACCAACAAAAAAAA  150
      ||||||  |||  |||||||||||||||||||||| | |||||| |||||
seq2  AGCCAGAGCTACGCAGAGAAACCCTGTCTCGAAAACAACAACAACAAAAA  150

seq1  AAAAAAAAAAAAAA-  164
      |||||||||||||| 
seq2  AAAAAAAAAAAAAAA  165