BAC Information

Click to search

BAC

Clone NameB6Ng01-117C05
Chromosome2 (Build37)6 (Build37)
Map Location 142,777,245 - 142,777,698110,295,560 - 110,296,810
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117C05.bB6Ng01-117C05.g
ACCDH921954DH921955
length9431,232
definitionDH921954|Mus musculus domesticus DNA, BAC clone: B6Ng01-117C05, 5' end.DH921955|Mus musculus domesticus DNA, BAC clone: B6Ng01-117C05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,777,245 - 142,777,698)(110,295,560 - 110,296,810)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgaacaaggctcttataaacatagtggagcatgtgtccttgtaatact
gtgaaatgtcttttgggtatatgcccaacattggtaaggctgggtcttca
ggtagaactatttccaatttttgatgaaattccatatttatttccagagt
agttgtacaagtttgcaatcccatcgagtatgggatagtgttctttttcc
acatcctctccagcatgcactgtcacttgaggtttttttttttttttttt
ttttttttttttatcttaactagtcttaatggtgaagatagaattttatg
gtcattttgatttgctatggatgttaaacatttctttaagtgcatctcag
ccattcgagattcctcccgttgagaattttctgtttaacactgtacccca
tttttaattggattattttattttttaactatagcttcttgatctcttaa
aatattttggatattagccatctatatgatatagggttagtga
gaattccccaagattgggacttgagtaggtagggggtcagagaattttaa
aagacagctctgtgcagctatgggggagccctcatccctattgctaagaa
tggtcagggagaaataaccacaaccatgcatgtgacctctcacctagggt
ctagaaagaagctcggcaagttcatccgtttctacaagtgaactttggtg
gcactgtaatggaagggaaagaaggagctattgcttagtctccccctggg
aagaaattttcacagcataaatgatttgaacactggacattttcatcaga
tttttaaaaatacaaccaacactcatctgtaaatgtttttatgcataagg
tcatgtaaaattacattgttttagtttattaaacttttatttttagtaca
tataacttttatttccacatatttcatttctaagacaatttaattcaggc
ttcaaccactaaggtttcacataaataataaaccttctgaagatatgttc
tttcagtttttgttcaaaagtaaaagttttatgtactctggttctgaact
aagtttagaggaattcctggtagttgcttagtctatagaacttaaaaccg
tgctttcacccagaaaggtctctacttacttgttgtgaagtcatgctaat
gagaacctgtgggtgagagtagtgactttggccatatttgtttcttcagt
tatatacacaagtagaggtcactcaagaaagaaaccatctagatatgatg
gtttgtacttttttctttttttctgtttttgctagtttctctttaaaagt
ccccttaaaagattgttttatattttgctcagaaaaaaaagtgtttggtc
ttattgctagaaaataacacctggcctacaagagttgtgtttattttttg
ttctttcataatactataccttcagaaaaaatattaaatcacatccttat
aataatgtgatgaaaacaaaattaacagaaagtgctatgtaaccatccat
tgtccctaaaataataatgctcccttctttaccaacccaatttttctttg
aagtctctgctattcataatgaattcctggtggaaggagtatattcaaat
gctcataaaattccatggagtgtgcattcccctggtgacaaggcaaggcc
aggggtagcagggaatctaggcacttcattgagtaccttccccagggctc
atcattggttcgaatacattggaaagggtaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142777245_142777698
seq2: B6Ng01-117C05.b_45_498 (reverse)

seq1  CAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAA  50
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAGAA  50

seq1  GAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAG  100

seq1  TGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGA  150

seq1  GAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGA  200

seq1  ACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGAC  250
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  ACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATCGACAAATGGGAC  250

seq1  CTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGAC  300
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  CTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGAC  300

seq1  AAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAG  350
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAG  350

seq1  ATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTC  400

seq1  AGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGA  450

seq1  ATTC  454
      ||||
seq2  ATTC  454

seq1: chr6_110295560_110296810
seq2: B6Ng01-117C05.g_67_1298

seq1  GAATTCCCCAAGATTGGGACTTGAGTAGGTAGGGGGTCAGAGAATTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAAGATTGGGACTTGAGTAGGTAGGGGGTCAGAGAATTTTAA  50

seq1  AAGACAGCTCTGTGCAGCTATGGGGGAGCCCTCATCCCTATTGCTAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCTCTGTGCAGCTATGGGGGAGCCCTCATCCCTATTGCTAAGAA  100

seq1  TGGTCAGGGAGAAATAACCACAACCATGCATGTGACCTCTCACCTAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGGAGAAATAACCACAACCATGCATGTGACCTCTCACCTAGGGT  150

seq1  CTAGAAAGAAGCTCGGCAAGTTCATCCGTTTCTACAAGTGAACTTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAGAAGCTCGGCAAGTTCATCCGTTTCTACAAGTGAACTTTGGTG  200

seq1  GCACTGTAATGGAAGGGAAAGAAGGAGCTATTGCTTAGTCTCCCCCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTAATGGAAGGGAAAGAAGGAGCTATTGCTTAGTCTCCCCCTGGG  250

seq1  AAGAAATTTTCACAGCATAAATGATTTGAACACTGGACATTTTCATCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTTTCACAGCATAAATGATTTGAACACTGGACATTTTCATCAGA  300

seq1  TTTTTAAAAATACAACCAACACTCATCTGTAAATGTTTTTATGCATAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAATACAACCAACACTCATCTGTAAATGTTTTTATGCATAAGG  350

seq1  TCATGTAAAATTACATTGTTTTAGTTTATTAAACTTTTATTTTTAGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAAAATTACATTGTTTTAGTTTATTAAACTTTTATTTTTAGTACA  400

seq1  TATAACTTTTATTTCCACATATTTCATTTCTAAGACAATTTAATTCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTTTATTTCCACATATTTCATTTCTAAGACAATTTAATTCAGGC  450

seq1  TTCAACCACTAAGGTTTCACATAAATAATAAACCTTCTGAAGATATGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCACTAAGGTTTCACATAAATAATAAACCTTCTGAAGATATGTTC  500

seq1  TTTCAGTTTTTGTTCAAAAGTAAAAGTTTTATGTACTCTGGTTCTGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTTTTGTTCAAAAGTAAAAGTTTTATGTACTCTGGTTCTGAACT  550

seq1  AAGTTTAGAGGAATTCCTGGTAGTTGCTTAGTCTATAGAACTTAAAACCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAGAGGAATTCCTGGTAGTTGCTTAGTCTATAGAACTTAAAACCG  600

seq1  TGCTTTCACCCAGAAAGGTCTCTACTTACTTGTTGTGAAGTCATGCTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCACCCAGAAAGGTCTCTACTTACTTGTTGTGAAGTCATGCTAAT  650

seq1  GAGAACCTGTGGGTGAGAGTAGTGACTTTGGCCATATTTGTTTCTTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCTGTGGGTGAGAGTAGTGACTTTGGCCATATTTGTTTCTTCAGT  700

seq1  TATATACACAAGTAGAGGTCACTCAAGAAAGAAACCATCTAGATATGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACACAAGTAGAGGTCACTCAAGAAAGAAACCATCTAGATATGATG  750

seq1  GTTTGTACTTTTTTCTTTTTTTCTGTTTTTGCTAGTTTCTCTTTAAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTACTTTTTTCTTTTTTTCTGTTTTTGCTAGTTTCTCTTTAAAAGT  800

seq1  CCCCTTAAAAGATTGTTTTATATTTTGCTCAGAAAAAAAAGTGTTTGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTAAAAGATTGTTTTATATTTTGCTCAGAAAAAAAAGTGTTTGGTC  850

seq1  TTATTGCTAGAAAATAACACCTGGCCTACAAGAGTTGTTGTTTATTTTTT  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTATTGCTAGAAAATAACACCTGGCCTACAAGAGTTG-TGTTTATTTTTT  899

seq1  GTTCTTTCATAATACTATACCTTCAGAAAAAATATTAAATCACATCCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCATAATACTATACCTTCAGAAAAAATATTAAATCACATCCTTA  949

seq1  TAATAATGTGATGAAAACAAAATTAACAGAAAGTGCTATGTAACCATCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGTGATGAAAACAAAATTAACAGAAAGTGCTATGTAACCATCCA  999

seq1  TTGTCCCTAAAATAATAATGCTCACTCTCTTACCAACTCCAATTTTTCTT  1050
      ||||||||||||||||||||||| ||   |||||||| ||||||||||||
seq2  TTGTCCCTAAAATAATAATGCTCCCTTCTTTACCAAC-CCAATTTTTCTT  1048

seq1  TGAAAGTCTCTGCATATTCATTAATGAATATCTGTTGGAATGAGTATATT  1100
      || |||||||||| |||||| ||||||||  ||| ||||| |||||||||
seq2  TG-AAGTCTCTGC-TATTCA-TAATGAATTCCTGGTGGAAGGAGTATATT  1095

seq1  CAAAATGCTCATTAAATATTCATGTAGTGTGCATTCACCCTGTGACAAAT  1150
      | |||||||||| |||| | |||| ||||||||||| ||  ||||| || 
seq2  C-AAATGCTCATAAAAT-TCCATGGAGTGTGCATTCCCCTGGTGAC-AAG  1142

seq1  GCAATG-CAGGTGTA-CAGTGGAATCAATGCACTTTCAAATGAAGTAAAC  1198
      |||| | |||| ||| ||| |||||| | ||||||    ||  |||  ||
seq2  GCAAGGCCAGGGGTAGCAG-GGAATCTAGGCACTT---CATTGAGT--AC  1186

seq1  CATCAGCAGGTCTCATCCATTGGTTTTACAGATTACCAATTGGAAAGGGT  1248
      | ||  |||| ||||| ||||||||     || |||  ||||||||||||
seq2  CTTCCCCAGGGCTCAT-CATTGGTT----CGAATAC--ATTGGAAAGGGT  1229

seq1  AAG  1251
      |||
seq2  AAG  1232