BAC Information

Click to search

BAC

Clone NameB6Ng01-117F24
Chromosome2 (Build37)
Map Location 144,914,822 - 145,076,356
singlet/doubletdoublet
Overlap geneSlc24a3
Upstream geneLOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneLOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117F24.bB6Ng01-117F24.g
ACCDH922132DH922133
length1,168936
definitionDH922132|Mus musculus domesticus DNA, BAC clone: B6Ng01-117F24, 5' end.DH922133|Mus musculus domesticus DNA, BAC clone: B6Ng01-117F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,914,822 - 144,915,999)(145,075,381 - 145,076,356)
sequence
gaattcactgcaatttgaatggtaaaaaaaagtgcagtccaagccatttg
catcagtccaaatcagtagagtgccttccagcactgtgcattagcagcaa
gcagctgtacttgccatgtggtttcctcaaggtgtctgtaagagtattca
aagcagccaatgcactagtatgagggtagtctgattggctgtttgctttt
agccttttggttaaggtgactggaatacgaccaccagactttttcaacca
cagatggaacacagggcccctgtgacgcctgttagatactaataatacga
atgagtggatgaacatattcatgaacactagctgtataaaatacctttcc
cagcatcacatggtagaatagcagagttctgcctcttctccttatgtccc
ctgccagtgctcaaccccagctggtatctttgtagtgctggcttcttcct
gacccaacagtaccaatgtaggttctttgtcttccatgagagcaagtatg
tgctggacactgtgtagggagcttagccaagggattgtcacacagtagga
agtcaacaatatcgagccaacaaaattcaggaagcatattgctatatgcc
ctaggattttgagttcgcatgcagggttttatgtgactttcattattgtg
ttgctgtgagttgccaatcttttctcttattgataattttcatttgtggc
ttttagttttccataagcacgaagtcaaaaccagttcatgtgtaatgaaa
gagagatagctgactctcattcacaccacttatgttcaatagggtcccca
gaaacactaaattagtaccaaatcattagtcctggatgaaatataactgg
gttcccataagtctgtggtcacaagtcagaggcatccagtcccatgggtg
gcatgaagaaccatagggctctgagctttggtaatgtggtccaaccctaa
tctacttttggatatgtaaaaattttaaaccaaccagcactcaagtcagt
ttgatcaccttttattatagccattttcatgcaatggagccctgatactt
attcatttagtgaaaatgcctttttactgtattaaagaaaataaaagcac
catgctattttatttcagtaacgggaactctccatcaatctctataccat
ttacaaagaatgcctttt
gaattctctggcaagctaatctggtaaaaatggcttctagttgagcaaga
gacagtatttcaagggaaaatggtagagagtgatagggcaacacacacac
acacacacacacacacacacacacacacacacacacacacagagagagag
agagagagagagagagagagagagagagagagaagagagagagagagaga
ggcagagatagagagacagagacagagagaaggcaaatgtatctacaaag
agaagttaaagttgtttaaccttgagcaatgatttatagatttttcagcc
tttaaatttcattttttttctgggttcaataccagcaatgataacactga
ggtggttacaactggttgttcctaatgtttttcgtgtgtttgatagaaat
atattcaatgtgatttttgtaatttttatctgtacaaccttacttttaca
aggtagctgcaagaaaaacataagcttgcatttgagtcagcattaagttc
ctctttgtccaaagtagataatgtgaagctcaggttatctgtgcacatct
acacagtgtgtatctattggggggggagcccacttggcttctaagtccat
cacctttgggttggttgtttattccatctgaatattgatctttcatataa
aggattacaaactgaggtttttcaggcttcatacattggtcatatccagt
cctggattaaactagtcaactctgatgttactgttaattcctaaacagac
ggatcttggtatgccttcttgtgtcttccacatactactccgtgaaccac
tcatctattctctggtcctatctgccaattccactactcctagtataagt
tctgatcagtccataagccattgatctctgacattccttagacagttctg
cactcagcttagtctgcacaggtcagtatctcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_144914822_144915999
seq2: B6Ng01-117F24.b_42_1209

seq1  GAATTCACTGCAATTTGAATGGTAAAAAAAAGTGCAGTCCAAGCCATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCAATTTGAATGGTAAAAAAAAGTGCAGTCCAAGCCATTTG  50

seq1  CATCAGTCCAAATCAGTAGAGTGCCTTCCAGCACTGTGCATTAGCAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCCAAATCAGTAGAGTGCCTTCCAGCACTGTGCATTAGCAGCAA  100

seq1  GCAGCTGTACTTGCCATGTGGTTTCCTCAAGGTGTCTGTAAGAGTATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGTACTTGCCATGTGGTTTCCTCAAGGTGTCTGTAAGAGTATTCA  150

seq1  AAGCAGCCAATGCACTAGTATGAGGGTAGTCTGATTGGCTGTTTGCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCCAATGCACTAGTATGAGGGTAGTCTGATTGGCTGTTTGCTTTT  200

seq1  AGCCTTTTGGTTAAGGTGACTGGAATACGACCACCAGACTTTTTCAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTGGTTAAGGTGACTGGAATACGACCACCAGACTTTTTCAACCA  250

seq1  CAGATGGAACACAGGGCCCCTGTGACGCCTGTTAGATACTAATAATACGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGAACACAGGGCCCCTGTGACGCCTGTTAGATACTAATAATACGA  300

seq1  ATGAGTGGATGAACATATTCATGAACACTAGCTGTATAAAATACCTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGGATGAACATATTCATGAACACTAGCTGTATAAAATACCTTTCC  350

seq1  CAGCATCACATGGTAGAATAGCAGAGTTCTGCCTCTTCTCCTTATGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCACATGGTAGAATAGCAGAGTTCTGCCTCTTCTCCTTATGTCCC  400

seq1  CTGCCAGTGCTCAACCCCAGCTGGTATCTTTGTAGTGCTGGCTTCTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTGCTCAACCCCAGCTGGTATCTTTGTAGTGCTGGCTTCTTCCT  450

seq1  GACCCAACAGTACCAATGTAGGTTCTTTGTCTTCCATGAGAGCAAGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAACAGTACCAATGTAGGTTCTTTGTCTTCCATGAGAGCAAGTATG  500

seq1  TGCTGGACACTGTGTAGGGAGCTTAGCCAAGGGATTGTCACACAGTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGACACTGTGTAGGGAGCTTAGCCAAGGGATTGTCACACAGTAGGA  550

seq1  AGTCAACAATATCGAGCCAACAAAATTCAGGAAGCATATTGCTATATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACAATATCGAGCCAACAAAATTCAGGAAGCATATTGCTATATGCC  600

seq1  CTAGGATTTTGAGTTCGCATGCAGGGTTTTATGTGACTTTCATTATTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTTTGAGTTCGCATGCAGGGTTTTATGTGACTTTCATTATTGTG  650

seq1  TTGCTGTGAGTTGCCAATCTTTTCTCTTATTGATAATTTTCATTTGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGAGTTGCCAATCTTTTCTCTTATTGATAATTTTCATTTGTGGC  700

seq1  TTTTAGTTTTCCATAAGCACGAAGTCAAAACCAGTTCATGTGTAATGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTTTCCATAAGCACGAAGTCAAAACCAGTTCATGTGTAATGAAA  750

seq1  GAGAGATAGCTGACTCTCATTCACACCACTTATGTTCAATAGGGTCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATAGCTGACTCTCATTCACACCACTTATGTTCAATAGGGTCCCCA  800

seq1  GAAACACTAAATTAGTACCAAATCATTAGTCCTGGATGAAATATAACTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTAAATTAGTACCAAATCATTAGTCCTGGATGAAATATAACTGG  850

seq1  GTTCCCATAAGTCTGTGGTCACAAGTCAGAGGCATCCAGTCCCATGGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCATAAGTCTGTGGTCACAAGTCAGAGGCATCCAGTCCCATGGGTG  900

seq1  GCATGAAGAACCATAGGGCTCTGAGCTTTGGTAATGTGGTCCAACCCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAGAACCATAGGGCTCTGAGCTTTGGTAATGTGGTCCAACCCTAA  950

seq1  TCTACTTTTGGATATGTAAAAATTTTAAACCAACCAGCAACTCAAGTCAG  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTACTTTTGGATATGTAAAAATTTTAAACCAACCAGC-ACTCAAGTCAG  999

seq1  TTTGAATCACC-TTTATTATAGCCATTTTCATGCAAATGAGCCCTGATTA  1049
      |||| |||||| ||||||||||||||||||||||||  ||||||||||  
seq2  TTTG-ATCACCTTTTATTATAGCCATTTTCATGCAATGGAGCCCTGAT--  1046

seq1  ACTTATCCATTTAGTGAAAATGCCTTTTTACTGTATTACAGAAATAAAAA  1099
      |||||| ||||||||||||||||||||||||||||||| |||||  ||||
seq2  ACTTATTCATTTAGTGAAAATGCCTTTTTACTGTATTAAAGAAAATAAAA  1096

seq1  GCAACCAATGCTATTTTATTTCCAGTAACAGGAAACTCTCCATCCATCTC  1149
      |||  | |||||||||||||| ||||||| || ||||||||||| |||||
seq2  GCA--CCATGCTATTTTATTT-CAGTAAC-GGGAACTCTCCATCAATCTC  1142

seq1  -ATACCACATTTTTACAAAAGAATGCTTTT-  1178
       ||||||    ||||| ||||||||| ||| 
seq2  TATACCA----TTTAC-AAAGAATGCCTTTT  1168

seq1: chr2_145075381_145076356
seq2: B6Ng01-117F24.g_65_1000 (reverse)

seq1  AGAA-AGATACCTGGACCTGTGTTGCAAGACTAAGCTGAGGTTGGCAAGA  49
      |||| ||||||   ||||||||     |||||||||||||  ||   |||
seq2  AGAAGAGATAC--TGACCTGTG----CAGACTAAGCTGAG--TG--CAGA  40

seq1  GACTGTCTTAAGGGAATGTGTCAAGAGATCAATGGCTTATGGACTGATCA  99
       |||||||  | |||||||    |||||||||||||||||||||||||||
seq2  -ACTGTCT--AAGGAATGT---CAGAGATCAATGGCTTATGGACTGATCA  84

seq1  GAAACTATATAACCTAGGAGGTAAGTGGGAATTGGGCAGATAGGGACCAG  149
      |||  ||||    |||||||   ||| |||||| |||||||| |||||||
seq2  GAACTTATA----CTAGGAG--TAGT-GGAATT-GGCAGATA-GGACCAG  125

seq1  AAGAAATAAGATGGAGTGGGTTCACGGAGTAGGTATGGTGGAAGACAACA  199
       ||||   |||| |||| ||||||||||||| |||| ||||||||| |||
seq2  -AGAA--TAGAT-GAGT-GGTTCACGGAGTA-GTAT-GTGGAAGAC-ACA  167

seq1  AGAAAGGCATACCAAGATCCGTCTGTTTAGGAATTTAAACAGTAACATCA  249
      || ||||||||||||||||||||||||||||||||  |||||||||||||
seq2  AG-AAGGCATACCAAGATCCGTCTGTTTAGGAATT--AACAGTAACATCA  214

seq1  GAGTTGACTAGTTTAATCCAGGACTGGATATGACCAATGTATGAAGCCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGACTAGTTTAATCCAGGACTGGATATGACCAATGTATGAAGCCTG  264

seq1  AAAAACCTCAGTTTGTAATCCTTTATATGAAAGATCAATATTCAGATGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAAACCTCAGTTTGTAATCCTTTATATGAAAGATCAATATTCAGAT-GG  313

seq1  AATAAACAACCAACCCAAAGGTGATGGGACTTAGAAGCCAAGTGGGGCTC  399
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  AATAAACAACCAACCCAAAGGTGAT-GGACTTAGAAGCCAAGT-GGGCTC  361

seq1  CCCCCCCAATAGATACACACTGTGTAGATGTGCACAGATAACCTGAGCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCAATAGATACACACTGTGTAGATGTGCACAGATAACCTGAGCTT  411

seq1  CACATTATCTACTTTGGACAAAGAGGAACTTAATGCTGACTCAAATGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTATCTACTTTGGACAAAGAGGAACTTAATGCTGACTCAAATGCAA  461

seq1  GCTTATGTTTTTCTTGCAGCTACCTTGTAAAAGTAAGGTTGTACAGATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGTTTTTCTTGCAGCTACCTTGTAAAAGTAAGGTTGTACAGATAA  511

seq1  AAATTACAAAAATCACATTGAATATATTTCTATCAAACACACGAAAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACAAAAATCACATTGAATATATTTCTATCAAACACACGAAAAACA  561

seq1  TTAGGAACAACCAGTTGTAACCACCTCAGTGTTATCATTGCTGGTATTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAACAACCAGTTGTAACCACCTCAGTGTTATCATTGCTGGTATTGA  611

seq1  ACCCAGAAAAAAAATGAAATTTAAAGGCTGAAAAATCTATAAATCATTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAAAAAAATGAAATTTAAAGGCTGAAAAATCTATAAATCATTGC  661

seq1  TCAAGGTTAAACAACTTTAACTTCTCTTTGTAGATACATTTGCCTTCTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTAAACAACTTTAACTTCTCTTTGTAGATACATTTGCCTTCTCT  711

seq1  CTGTCTCTGTCTCTCTATCTCTGCCTCTCTCTCTCTCTCTCTTCTCTCTC  799
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  CTGTCTCTGTCTCTCTATCTCTGCCTCTCTCTCTCTCTCTCT--TCTCTC  759

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTG  809

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCCCTATCACTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCCCTATCACTC  859

seq1  TCTACCATTTTCCCTTGAAATACTGTCTCTTGCTCAACTAGAAGCCATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCATTTTCCCTTGAAATACTGTCTCTTGCTCAACTAGAAGCCATTT  909

seq1  TTACCAGATTAGCTTGCCAGAGAATTC  976
      |||||||||||||||||||||||||||
seq2  TTACCAGATTAGCTTGCCAGAGAATTC  936