BAC Information

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BAC

Clone NameB6Ng01-117K13
Chromosome2 (Build37)
Map Location 9,468,744 - 9,580,672
singlet/doubletdoublet
Overlap geneLOC100040548, LOC100040566
Upstream geneLOC100040710
Downstream geneGata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117K13.bB6Ng01-117K13.g
ACCDH922343DH922344
length269475
definitionDH922343|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K13, 5' end.DH922344|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,468,744 - 9,469,012)(9,580,192 - 9,580,672)
sequence
gaattctatatatttgtccttatgacattaccacgaccacatcgtgtgct
tgctcgctctctctctcccccctcctcgccatgtgaaagtcaggcatggc
tctgggtgcctggaagcccagagctgagggaagacgacacagtagcctct
gcccaagagttagccagttgatcaaacaatgatcctcaggtcaataagaa
aaggaatctgaaagaaaggaaggaagaaaggaaaataaggagggagggag
ggaagaaggaaggggggaa

aaactcaggctggctttgactacaaagcccacatgatgtttctgtttcct
tgaaattctacaaagccatccagtactacccaggaggatgaagacatctg
aaggatgtgacccaagaagagctataagactaagtcatttggatgatcaa
aaggggggatagatagaagccttaaggagtcattaatgatggagtcaaag
tggctcagaatttggctgagtagaactgtggcctggcatactcacggcac
tggattcaattcctagcactggaaaaaattaatggtaaaaaatgtgtaac
attccagtcagatggctgtcaaggggcttaacaactgttagagtaaactg
ttgttttgatgatagaaaaacatctgtgtgtattaacaagcttatcaact
ttgcagattaaaaagaaaaaaggagaaattgagtaagaggattaggtgtg
tgtgtgtgtgtgtgtgtttagaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_9468744_9469012
seq2: B6Ng01-117K13.b_42_310

seq1  GAATTCTATATATTTGTCCTTATGACATTACCACGACCACATCGTGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATATTTGTCCTTATGACATTACCACGACCACATCGTGTGCT  50

seq1  TGCTCGCTCTCTCTCTCCCCCCTCCTCGCCATGTGAAAGTCAGGCATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGCTCTCTCTCTCCCCCCTCCTCGCCATGTGAAAGTCAGGCATGGC  100

seq1  TCTGGGTGCCTGGAAGCCCAGAGCTGAGGGAAGACGACACAGTAGCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTGCCTGGAAGCCCAGAGCTGAGGGAAGACGACACAGTAGCCTCT  150

seq1  GCCCAAGAGTTAGCCAGTTGATCAAACAATGATCCTCAGGTCAATAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGAGTTAGCCAGTTGATCAAACAATGATCCTCAGGTCAATAAGAA  200

seq1  AAGGAATCTGAAAGAAAGGAAGGAAGAAAGGAAAATAAGGAGGGAGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATCTGAAAGAAAGGAAGGAAGAAAGGAAAATAAGGAGGGAGGGAG  250

seq1  GGAAGAAGGAAGGGGGGAA  269
      |||||||||||||||||||
seq2  GGAAGAAGGAAGGGGGGAA  269


seq1: chr2_9580192_9580672
seq2: B6Ng01-117K13.g_67_547 (reverse)

seq1  CCTTCTAAACACACACACACACACACACACCTAATCCTCTTACTCAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAAACACACACACACACACACACACCTAATCCTCTTACTCAATTT  50

seq1  CTCCTTTTTTCTTTTTAATCTGCAAAGTTGATAAGCTTGTTAATACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTTTCTTTTTAATCTGCAAAGTTGATAAGCTTGTTAATACACAC  100

seq1  AGATGTTTTTCTATCATCAAAACAACAGTTTACTCTAACAGTTGTTAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTTTCTATCATCAAAACAACAGTTTACTCTAACAGTTGTTAAGC  150

seq1  CCCTTGACAGCCATCTGACTGGAATGTTACACATTTTTTACCATTAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGACAGCCATCTGACTGGAATGTTACACATTTTTTACCATTAATTT  200

seq1  TTTCCAGTGCTAGGAATTGAATCCAGTGCCGTGAGTATGCCAGGCCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTGCTAGGAATTGAATCCAGTGCCGTGAGTATGCCAGGCCACAG  250

seq1  TTCTACTCAGCCAAATTCTGAGCCACTTTGACTCCATCATTAATGACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTCAGCCAAATTCTGAGCCACTTTGACTCCATCATTAATGACTCC  300

seq1  TTAAGGCTTCTATCTATCCCCCCTTTTGATCATCCAAATGACTTAGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCTTCTATCTATCCCCCCTTTTGATCATCCAAATGACTTAGTCTT  350

seq1  ATAGCTCTTCTTGGGTCACATCCTTCAGATGTCTTCATCCTCCTGGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTTCTTGGGTCACATCCTTCAGATGTCTTCATCCTCCTGGGTAG  400

seq1  TACTGGATGGCTTTGTAGAATTTCAAGGAAACAGAAACATCATGTGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGATGGCTTTGTAGAATTTCAAGGAAACAGAAACATCATGTGGGCT  450

seq1  TTGTAGTCAAAGCCAGCCTGAGTTTGAATTC  481
      |||||||||||||||||||||||||||||||
seq2  TTGTAGTCAAAGCCAGCCTGAGTTTGAATTC  481


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