BAC Information

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BAC

Clone NameB6Ng01-117M18
Chromosome2 (Build37)
Map Location 178,550,034 - 178,686,801
singlet/doubletdoublet
Overlap geneLOC100039368
Upstream geneLOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
Downstream geneLOC665264, LOC100043168, LOC100039413, Cdh4, Taf4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117M18.bB6Ng01-117M18.g
ACCDH922444DH922445
length1,1311,046
definitionDH922444|Mus musculus domesticus DNA, BAC clone: B6Ng01-117M18, 5' end.DH922445|Mus musculus domesticus DNA, BAC clone: B6Ng01-117M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,685,645 - 178,686,801)(178,550,034 - 178,551,088)
sequence
gaattccaaggtcagcccttgctgctctggaggaaccgggagctgagccg
gcgagggcttgcttgctttattattatttttttctttttcaactgtagat
taagtcccagcgtttccagccgtctatggataagaagcaaacttcagtct
tttttagtaaaggtttattttgaccaagtgtgacagagaaaagaagtttc
aaatgaggtttccaggttcatatttgaagaggtttgtaaaagccagataa
aaatacaaggttttcagttccaattagaactggatgttagaatgaatcgg
tatcaggtcaccgtgacccgtgaaactcacttcttctcttcatgggaagc
ctttctgtcttggtggctgtgctgaaaataatgttttttttctttttaaa
aacctggaaaatgcaaaggagctcaaacctcatttggggtcattccccca
ctttgtacgcgatggatagtaatatgtaatgaaatgttaataagtactct
ctgtccctgccatataaaagagtgagactctgccaggtgaagtcccaccc
tgagtcccagcctcctagaccccacggagcacagctcaggtttgatgtgt
gggatgctgatagtaaggtgtttttcaaagctcccaatatatttgtgggt
gaccttttggggccataagtttctggacttggcactccaagagagtcagg
agagtgctagtgagcagctctgagatggagggacctgaagtcaccacatc
tgaccacctgagtttggtctctaggttccacatggtgaaaggacagaact
aatttctgaaatttgactgtcacaagtgtgctgtgacatacacatgcaca
aacacacatgtgcacacacatacacacatatacacacataaacacataca
tgcacacacacatacacacatacatacatacacacacatacatcaaaaca
aacactgggaaaaacatgcatatacacacatatacacacaacacacattc
tcacacacgatatacacatatatacgataccactatactatacctattta
cgatcccacctccccttttttaacaaccccggatcctgcacacacaccac
acccattctccaaaaccgagaacacacattc
gaattcaatttcttattcttaatgaacacaaaggctgttttatttttttt
ctttttcagtctgcggtcctgaaacgctggcaatgcgcagtgctgagtta
gcacactgaagagcatgcaagcgcgctggagggagggtgctcccttgagc
acctggcctttcttcttaattcttttaaattgatcacctttagtttcact
gaagcacagttcccatttagagaatgtgcagaggttaccatgctgtagtc
aagcatgtgtggggtctagcgaggaagattctagatcttgggaatagctg
taagtgaccattcgtggctcccatccgatgtgggatcaccgtgcctatcc
cattggaggaagagtcagagaggcaggatcaagaaaccacaaggatcaag
ccatctcgggagcaaaggtctggtgtccaagcaggaaccgcagccccgcc
ccttcacatatccaatcacctagatgggtgtggtagccccgccccttcac
atatccaatcacctaggctgatgtggtgaccttctatgcaggctttccat
ctccaggcttgctagtctttaatgctgatctcctctagacgtctggagat
gtaagctcaccttgccaaactcaccacaggccctcaagcatatctgtaag
actgagctcaaactgttcagctattcccattctcctcctgaatatgccca
ggcctggctccctgttctggctcagcagtgtcagctctctcagaactgaa
gctgcatcaggttccaaaggagcattgtccccgccctccccgtcccaccc
ctccgtgcgcatgcgcatcctctccctctctctctctctctctctctctc
tctccctctctacctctactttcccttccctccctcctccccctgcttct
gtgcctcactctcagaatctcagccttcctacagtctgcctcaacttaga
acactgtcctgtcttcttatctgctcctgaagaagcctcaccccaagagc
cgtccaactcaaatgctctcagccccattctatttacgtcttctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_178685645_178686801
seq2: B6Ng01-117M18.b_48_1178 (reverse)

seq1  GAATGTGTGTGTCTCTGTGTGTTTGTGAGAATGTGTGTGTGTGTGTGTGC  50
      |||||||||| |||| ||   |||| ||||||| ||||| ||||||||||
seq2  GAATGTGTGT-TCTCGGT---TTTG-GAGAATGGGTGTG-GTGTGTGTGC  44

seq1  ATGTGTATCTGTGTGTTTGTTTATATATATGTGTATGTGTGTGTATCTGT  100
      |   | ||| | |     |||  || | | | | | |||   | ||| ||
seq2  A---GGATCCGGG-----GTTGTTAAAAAAGGGGAGGTG---GGATC-GT  82

seq1  ATATATGTGTATATGTATATGTGTGTATCTGTATATATGTGTATATATGT  150
      | ||| || ||   ||||| ||| ||||| ||||||||||||||||  ||
seq2  AAATAGGTATA---GTATA-GTG-GTATC-GTATATATGTGTATAT-CGT  125

seq1  GTGTGTGAATGTGTGTTTGTGTGTATATGTGTGTATATGCATGTGTGTCC  200
      ||||| ||||||||| |||||||||||||||||||||||||||| | |||
seq2  GTGTGAGAATGTGTG-TTGTGTGTATATGTGTGTATATGCATGTTTTTCC  174

seq1  CAGTGTTTGTTTTGATGTATGTGTGTGTATGTATGTATGTGTGTATGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTGTTTTGATGTATGTGTGTGTATGTATGTATGTGTGTATGTGT  224

seq1  GTGTGCATGTATGTGTTTATGTGTGTATATGTGTGTATGTGTGTGCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGTATGTGTTTATGTGTGTATATGTGTGTATGTGTGTGCACAT  274

seq1  GTGTGTTTGTGCATGTGTATGTCACAGCACACTTGTGACAGTCAAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTGTGCATGTGTATGTCACAGCACACTTGTGACAGTCAAATTTC  324

seq1  AGAAATTAGTTCTGTCCTTTCACCATGTGGAACCTAGAGACCAAACTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAGTTCTGTCCTTTCACCATGTGGAACCTAGAGACCAAACTCAG  374

seq1  GTGGTCAGATGTGGTGACTTCAGGTCCCTCCATCTCAGAGCTGCTCACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAGATGTGGTGACTTCAGGTCCCTCCATCTCAGAGCTGCTCACTA  424

seq1  GCACTCTCCTGACTCTCTTGGAGTGCCAAGTCCAGAAACTTATGGCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTCCTGACTCTCTTGGAGTGCCAAGTCCAGAAACTTATGGCCCCA  474

seq1  AAAGGTCACCCACAAATATATTGGGAGCTTTGAAAAACACCTTACTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCACCCACAAATATATTGGGAGCTTTGAAAAACACCTTACTATCA  524

seq1  GCATCCCACACATCAAACCTGAGCTGTGCTCCGTGGGGTCTAGGAGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCACACATCAAACCTGAGCTGTGCTCCGTGGGGTCTAGGAGGCTG  574

seq1  GGACTCAGGGTGGGACTTCACCTGGCAGAGTCTCACTCTTTTATATGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAGGGTGGGACTTCACCTGGCAGAGTCTCACTCTTTTATATGGCA  624

seq1  GGGACAGAGAGTACTTATTAACATTTCATTACATATTACTATCCATCGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGAGAGTACTTATTAACATTTCATTACATATTACTATCCATCGCG  674

seq1  TACAAAGTGGGGGAATGACCCCAAATGAGGTTTGAGCTCCTTTGCATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTGGGGGAATGACCCCAAATGAGGTTTGAGCTCCTTTGCATTTT  724

seq1  CCAGGTTTTTAAAAAGAAAAAAAACATTATTTTCAGCACAGCCACCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTTTAAAAAGAAAAAAAACATTATTTTCAGCACAGCCACCAAGA  774

seq1  CAGAAAGGCTTCCCATGAAGAGAAGAAGTGAGTTTCACGGGTCACGGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGCTTCCCATGAAGAGAAGAAGTGAGTTTCACGGGTCACGGTGA  824

seq1  CCTGATACCGATTCATTCTAACATCCAGTTCTAATTGGAACTGAAAACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATACCGATTCATTCTAACATCCAGTTCTAATTGGAACTGAAAACCT  874

seq1  TGTATTTTTATCTGGCTTTTACAAACCTCTTCAAATATGAACCTGGAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTTATCTGGCTTTTACAAACCTCTTCAAATATGAACCTGGAAAC  924

seq1  CTCATTTGAAACTTCTTTTCTCTGTCACACTTGGTCAAAATAAACCTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGAAACTTCTTTTCTCTGTCACACTTGGTCAAAATAAACCTTTA  974

seq1  CTAAAAAAGACTGAAGTTTGCTTCTTATCCATAGACGGCTGGAAACGCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAGACTGAAGTTTGCTTCTTATCCATAGACGGCTGGAAACGCTG  1024

seq1  GGACTTAATCTACAGTTGAAAAAGAAAAAAATAATAATAAAGCAAGCAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTAATCTACAGTTGAAAAAGAAAAAAATAATAATAAAGCAAGCAAG  1074

seq1  CCCTCGCCGGCTCAGCTCCCGGTTCCTCCAGAGCAGCAAGGGCTGACCTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGCCGGCTCAGCTCCCGGTTCCTCCAGAGCAGCAAGGGCTGACCTT  1124

seq1  GGAATTC  1157
      |||||||
seq2  GGAATTC  1131

seq1: chr2_178550034_178551088
seq2: B6Ng01-117M18.g_67_1112

seq1  GAATTCAATTTCTTATTCTTAATGAACACAAAGGCTGTTTTATTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTCTTATTCTTAATGAACACAAAGGCTGTTTTATTTTTTTT  50

seq1  CTTTTTCAGTCTGCGGTCCTGAAACGCTGGCAATGCGCAGTGCTGAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCAGTCTGCGGTCCTGAAACGCTGGCAATGCGCAGTGCTGAGTTA  100

seq1  GCACACTGAAGAGCATGCAAGCGCGCTGGAGGGAGGGTGCTCCCTTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGAAGAGCATGCAAGCGCGCTGGAGGGAGGGTGCTCCCTTGAGC  150

seq1  ACCTGGCCTTTCTTCTTAATTCTTTTAAATTGATCACCTTTAGTTTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCCTTTCTTCTTAATTCTTTTAAATTGATCACCTTTAGTTTCACT  200

seq1  GAAGCACAGTTCCCATTTAGAGAATGTGCAGAGGTTACCATGCTGTAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACAGTTCCCATTTAGAGAATGTGCAGAGGTTACCATGCTGTAGTC  250

seq1  AAGCATGTGTGGGGTCTAGCGAGGAAGATTCTAGATCTTGGGAATAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTGTGGGGTCTAGCGAGGAAGATTCTAGATCTTGGGAATAGCTG  300

seq1  TAAGTGACCATTCGTGGCTCCCATCCGATGTGGGATCACCGTGCCTATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGACCATTCGTGGCTCCCATCCGATGTGGGATCACCGTGCCTATCC  350

seq1  CATTGGAGGAAGAGTCAGAGAGGCAGGATCAAGAAACCACAAGGATCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAGGAAGAGTCAGAGAGGCAGGATCAAGAAACCACAAGGATCAAG  400

seq1  CCATCTCGGGAGCAAAGGTCTGGTGTCCAAGCAGGAACCGCAGCCCCGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCGGGAGCAAAGGTCTGGTGTCCAAGCAGGAACCGCAGCCCCGCC  450

seq1  CCTTCACATATCCAATCACCTAGATGGGTGTGGTAGCCCCGCCCCTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACATATCCAATCACCTAGATGGGTGTGGTAGCCCCGCCCCTTCAC  500

seq1  ATATCCAATCACCTAGGCTGATGTGGTGACCTTCTATGCAGGCTTTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAATCACCTAGGCTGATGTGGTGACCTTCTATGCAGGCTTTCCAT  550

seq1  CTCCAGGCTTGCTAGTCTTTAATGCTGATCTCCTCTAGACGTCTGGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCTTGCTAGTCTTTAATGCTGATCTCCTCTAGACGTCTGGAGAT  600

seq1  GTAAGCTCACCTTGCCAAACTCACCACAGGCCCTCAAGCATATCTGTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTCACCTTGCCAAACTCACCACAGGCCCTCAAGCATATCTGTAAG  650

seq1  ACTGAGCTCAAACTGTTCAGCTATTCCCATTCTCCTCCTGAATATGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTCAAACTGTTCAGCTATTCCCATTCTCCTCCTGAATATGCCCA  700

seq1  GGCCTGGCTCCCTGTTCTGGCTCAGCAGTGTCAGCTCTCTCAGAACTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCTCCCTGTTCTGGCTCAGCAGTGTCAGCTCTCTCAGAACTGAA  750

seq1  GCTGCATCAGGTTCCAAAGGAGCATTGTCCCCGCCCTCCCCGTCCCCACC  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCTGCATCAGGTTCCAAAGGAGCATTGTCCCCGCCCTCCCCGT-CCCACC  799

seq1  CCTCCGTGCGCATGCGCATCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGTGCGCATGCGCATCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCT  849

seq1  CTCTCCCTCCTCTCCCTCCTCCTCTCCCTTCCCCTCCCTCCTCCCCCTGC  900
      |||||||| |||| ||| || || |||||| |||||||||||||||||||
seq2  CTCTCCCT-CTCTACCT-CTACTTTCCCTT-CCCTCCCTCCTCCCCCTGC  896

seq1  TTCTGTGCCTCACTCTCAG-ATCTCAGCCTTCCTACAGTCTGCCTTCCAC  949
      ||||||||||||||||||| |||||||||||||||||||||||| || ||
seq2  TTCTGTGCCTCACTCTCAGAATCTCAGCCTTCCTACAGTCTGCC-TCAAC  945

seq1  CTAGAACACTGTCCCTGTCCTCCTATCCTGCCTTCCTG-AGAAGCCTCAC  998
       ||||||||||| |||||| || ||| ||||  ||||| |||||||||||
seq2  TTAGAACACTGT-CCTGTCTTCTTAT-CTGC--TCCTGAAGAAGCCTCAC  991

seq1  CCCAAGAGCCCGTCCAACTCAAATGCTCCTCAGCCCCCATTCTATTTAC-  1047
      |||||||| |||||||||||||||||| ||||| ||||||||||||||| 
seq2  CCCAAGAG-CCGTCCAACTCAAATGCT-CTCAG-CCCCATTCTATTTACG  1038

seq1  TCTTCTAT  1055
      ||||||||
seq2  TCTTCTAT  1046