BAC Information

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BAC

Clone NameB6Ng01-117O02
Chromosome2 (Build37)
Map Location 76,964,613 - 77,124,937
singlet/doubletdoublet
Overlap gene2610301F02Rik, Sestd1
Upstream genePde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn
Downstream geneLOC623706, LOC667906, Zfp533, BC003993, LOC667920, OTTMUSG00000016703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117O02.bB6Ng01-117O02.g
ACCDH922503DH922504
length1,142860
definitionDH922503|Mus musculus domesticus DNA, BAC clone: B6Ng01-117O02, 5' end.DH922504|Mus musculus domesticus DNA, BAC clone: B6Ng01-117O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,964,613 - 76,965,774)(77,124,086 - 77,124,937)
sequence
gaattcttttgatcactgccccctacaatctttcaaatatcacacagaga
ggcttaaaaatatcccaagattcatgccaccaaagacaaagtatgctttc
tgtgttcagctagcatttcatctatcttgtcaacccacgatgaggctcag
tagactctcaaagattacactgaaaaggaaggcatggttccattgccagc
tggataccaggacatcatagcctcaggcttccaaataaaaacagggtgca
tctgattcagctggctcccttgtgtacagaccctgttaaacctgaagatg
ctagcaaatgtagaaaaaggaatatttaatggtctcctcttccagcagca
aatgtttgccggaaagtccctacttccatggggtaaagttacttcgcttc
catgagtaaaattgttgagtgataatcacattggctgggtgagattgact
tgaggccatagaacccatcttggtcactggatctgagtctcttccagcct
cctaccaggaatgttaagtgattcagcttagcctcaggggaaccagtgag
ataactgctgctgtgtcaaaacagccagctgaggctttagtgctgagtct
actgttactgtttatatctcacagtgacaggtgtgacagagaaatcacca
gaaaaacacatctatgcatttggcaggctgccaaaaaatttacactggaa
agacagagttattaatcactttattttgaaaaatttgtagcaagcaatta
ataatgaagaactattttatagagtgttggagagttatagaatgtatgtg
catgtgtgtgtgcacatgtgtgcatgtgtgagtgcattgtgtctttaaaa
ttcactttattgctttgttccttttccatcattgccaaactttttgggga
tcaaatccagttaaagtgacaaatatcactacatggagtcctttgaaaag
tcaaataaatgaaacaacactaacaatataaaatttgtgattaatctatg
aagatatttcctcaggccagtaacagattataaatactttcaaacaggaa
aagactttccccaaccatttatctactaatttcatgggtgccacctcctc
tatcagtctgcagcctgattcctgtgggcggaagactgacat
gaattcagttaaggaggggccacttcaggctccagcctgaggctttccca
gtacagagcagaacacaaggctcaatctctacaagaaatattcttgacct
ttctatgcagatggctgcagcacattaggaaaacaagggggaaccagctg
agtaatttggaccaagctcgtccttcacattattttctcacttaaagata
tctgagacctggccccacattgaaatagcatgtgctggaagtgaaggacc
cagccctgttccttaaagaaaaccttttcaagagacaaatatttcactat
gtatattgagcttgacgatcaagttctcagtggtgaagaaaacatgttcg
gacttaaaattttagacttatttcaagtaataactaaaggcagtctggtg
aagtaagaagagtggtatctttgtataactgtcatgggcagatagaagga
cttttctagggcagggatttaagagtgcaccagcaaatcagaacatgagt
ctttaagcatatgatcttaatatgaaatcatgagacagggaaacaattta
cattattagtctagtagttgactgactatataaaatatttcacaagaatc
atctcccaataatatctgctcagaggagcacatatccagccatggcagag
gacctgtatggtatcctttctctctctgtggcaacatttctccttgtacg
gtggaagatgctttctttcacagcagaggacctgtgtggtatcctttctc
tctctgtggcaacgtttcctctttgtatagtgggggatgcttttctccat
gcccacaagcccatttttggtctaccagcctcggtgttttgccattcaca
aaattcaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_76964613_76965774
seq2: B6Ng01-117O02.b_47_1188

seq1  GAATTCTTTTGATCACTGCCCCCTACAATCTTTCAAATATCACACAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGATCACTGCCCCCTACAATCTTTCAAATATCACACAGAGA  50

seq1  GGCTTAAAAATATCCCAAGATTCATGCCACCAAAGACAAAGTATGCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAAAATATCCCAAGATTCATGCCACCAAAGACAAAGTATGCTTTC  100

seq1  TGTGTTCAGCTAGCATTTCATCTATCTTGTCAACCCACGATGAGGCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCAGCTAGCATTTCATCTATCTTGTCAACCCACGATGAGGCTCAG  150

seq1  TAGACTCTCAAAGATTACACTGAAAAGGAAGGCATGGTTCCATTGCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCTCAAAGATTACACTGAAAAGGAAGGCATGGTTCCATTGCCAGC  200

seq1  TGGATACCAGGACATCATAGCCTCAGGCTTCCAAATAAAAACAGGGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACCAGGACATCATAGCCTCAGGCTTCCAAATAAAAACAGGGTGCA  250

seq1  TCTGATTCAGCTGGCTCCCTTGTGTACAGACCCTGTTAAACCTGAAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTCAGCTGGCTCCCTTGTGTACAGACCCTGTTAAACCTGAAGATG  300

seq1  CTAGCAAATGTAGAAAAAGGAATATTTAATGGTCTCCTCTTCCAGCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAATGTAGAAAAAGGAATATTTAATGGTCTCCTCTTCCAGCAGCA  350

seq1  AATGTTTGCCGGAAAGTCCCTACTTCCATGGGGTAAAGTTACTTCGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGCCGGAAAGTCCCTACTTCCATGGGGTAAAGTTACTTCGCTTC  400

seq1  CATGAGTAAAATTGTTGAGTGATAATCACATTGGCTGGGTGAGATTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTAAAATTGTTGAGTGATAATCACATTGGCTGGGTGAGATTGACT  450

seq1  TGAGGCCATAGAACCCATCTTGGTCACTGGATCTGAGTCTCTTCCAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCATAGAACCCATCTTGGTCACTGGATCTGAGTCTCTTCCAGCCT  500

seq1  CCTACCAGGAATGTTAAGTGATTCAGCTTAGCCTCAGGGGAACCAGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAGGAATGTTAAGTGATTCAGCTTAGCCTCAGGGGAACCAGTGAG  550

seq1  ATAACTGCTGCTGTGTCAAAACAGCCAGCTGAGGCTTTAGTGCTGAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGCTGCTGTGTCAAAACAGCCAGCTGAGGCTTTAGTGCTGAGTCT  600

seq1  ACTGTTACTGTTTATATCTCACAGTGACAGGTGTGACAGAGAAATCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTACTGTTTATATCTCACAGTGACAGGTGTGACAGAGAAATCACCA  650

seq1  GAAAAACACATCTATGCATTTGGCAGGCTGCCAAAAAATTTACACTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACACATCTATGCATTTGGCAGGCTGCCAAAAAATTTACACTGGAA  700

seq1  AGACAGAGTTATTAATCACTTTATTTTGAAAAATTTGTAGCAAGCAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGTTATTAATCACTTTATTTTGAAAAATTTGTAGCAAGCAATTA  750

seq1  ATAATGAAGAACTATTTTATAGAGTGTTGGAGAGTTATAGAATGTATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAAGAACTATTTTATAGAGTGTTGGAGAGTTATAGAATGTATGTG  800

seq1  CATGTGTGTGTGCACATGTGTGCATGTGTGAGTGCATTGTGTCTTTAAAA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATGTGTGTGTGCACATGTGTGCATGTGTGAGTGCATTGTGTCTTT-AAA  849

seq1  ATTCACTTTATTGCTTTGTTCCTTTTCCATCATTGCCAAACTTTTTGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTTTATTGCTTTGTTCCTTTTCCATCATTGCCAAACTTTTTGGGG  899

seq1  ATCAAATCCAGTTAAAAGTGACAAATATCAACTACATGGAGTCTTTGTAA  950
      ||||||||||||| ||||||||||||||| ||||||||||||| ||  ||
seq2  ATCAAATCCAGTT-AAAGTGACAAATATC-ACTACATGGAGTCCTTTGAA  947

seq1  AAGTCAAAATAAAATGAAACAAACACTAACAATATAAAAATTTGTGATAA  1000
      ||||||||   ||||||||| |||||||||||||| |||||||||||| |
seq2  AAGTCAAA--TAAATGAAAC-AACACTAACAATAT-AAAATTTGTGATTA  993

seq1  ATCTATGAAGATATTTCCCTCAGGCCCAGTAACAGATTATAAAATACCTT  1050
      |||||||||||||||| ||||||| ||||||||||||||| ||||| |||
seq2  ATCTATGAAGATATTT-CCTCAGG-CCAGTAACAGATTAT-AAATA-CTT  1039

seq1  TCAAAACAGGAAAAAGAACTTTCCCCCAACCATTTATCTACATTATTTTC  1100
      || |||||||||||   ||||| ||||||||||||||||||  || ||||
seq2  TC-AAACAGGAAAA--GACTTT-CCCCAACCATTTATCTAC--TAATTTC  1083

seq1  ATAGGTGCCACCTCCTCTATCAGTCCTGGCCAGCCCCAGATTCTTGTGG-  1149
      || ||||||||||||||||||||| |||  |||  || ||||| ||||| 
seq2  ATGGGTGCCACCTCCTCTATCAGT-CTG--CAG--CCTGATTCCTGTGGG  1128

seq1  -CGAAGACTGACAT  1162
        ||||||||||||
seq2  CGGAAGACTGACAT  1142

seq1: chr2_77124086_77124937
seq2: B6Ng01-117O02.g_68_926 (reverse)

seq1  TTTG-ATTTTGTGAATGGCAAAACACCGAGGCTGGTAGACCAAAAAT-GG  48
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTGAATTTTGTGAATGGCAAAACACCGAGGCTGGTAGACCAAAAATGGG  50

seq1  CTTGTGGGCATGGAG-AAAGCATCCCCCACTATAC-AAGAGG-AACGTTG  95
      ||||||||||||||| ||||||||||||||||||| |||||| |||||||
seq2  CTTGTGGGCATGGAGAAAAGCATCCCCCACTATACAAAGAGGAAACGTTG  100

seq1  CCACAGAGAGAGAAAGGATACCACACAGGTCCTCTGCTGTG-AAGAAAGC  144
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCACAGAGAGAGAAAGGATACCACACAGGTCCTCTGCTGTGAAAGAAAGC  150

seq1  ATCTTCCACCGTACAAGGAG-AATGTTGCCACAGAGAGAGAAAGGATACC  193
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATCTTCCACCGTACAAGGAGAAATGTTGCCACAGAGAGAGAAAGGATACC  200

seq1  ATACAGGTCCTCTGCCATGGCTGGATATGTGCTCCTCTGAGCAGATATTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGTCCTCTGCCATGGCTGGATATGTGCTCCTCTGAGCAGATATTA  250

seq1  TTGGGAGATGATTCTTGTGAAATATTTTATATAGTCAGTCAACTACTAGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGATGATTCTTGTGAAATATTTTATATAGTCAGTCAACTACTAGA  300

seq1  CTAATAATGTAAATTGTTTCCCTGTCTCATGATTTCATATTAAGATCATA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAATGTAAATTGTTTCCCTGTCTCATGATTTCATATTAAGATCATA  350

seq1  TGCTTAAAGACTCATGTTCTGATTTGCTGGTGCACTCTTAAATCCCTGCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAAGACTCATGTTCTGATTTGCTGGTGCACTCTTAAATCCCTGCC  400

seq1  CTAGAAAAGTCCTTCTATCTGCCCATGACAGTTATACAAAGATACCACTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAGTCCTTCTATCTGCCCATGACAGTTATACAAAGATACCACTC  450

seq1  TTCTTACTTCACCAGACTGCCTTTAGTTATTACTTGAAATAAGTCTAAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTTCACCAGACTGCCTTTAGTTATTACTTGAAATAAGTCTAAAA  500

seq1  TTTTAAGTCCGAACATGTTTTCTTCACCACTGAGAACTTGATCGTCAAGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTCCGAACATGTTTTCTTCACCACTGAGAACTTGATCGTCAAGC  550

seq1  TCAATATACATAGTGAAATATTTGTCTCTTGAAAAGGTTTTCTTTAAGGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATACATAGTGAAATATTTGTCTCTTGAAAAGGTTTTCTTTAAGGA  600

seq1  ACAGGGCTGGGTCCTTCACTTCCAGCACATGCTATTTCAATGTGGGGCCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCTGGGTCCTTCACTTCCAGCACATGCTATTTCAATGTGGGGCCA  650

seq1  GGTCTCAGATATCTTTAAGTGAGAAAATAATGTGAAGGACGAGCTTGGTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAGATATCTTTAAGTGAGAAAATAATGTGAAGGACGAGCTTGGTC  700

seq1  CAAATTACTCAGCTGGTTCCCCCTTGTTTTCCTAATGTGCTGCAGCCATC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTACTCAGCTGGTTCCCCCTTGTTTTCCTAATGTGCTGCAGCCATC  750

seq1  TGCATAGAAAGGTCAAGAATATTTCTTGTAGAGATTGAGCCTTGTGTTCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGAAAGGTCAAGAATATTTCTTGTAGAGATTGAGCCTTGTGTTCT  800

seq1  GCTCTGTACTGGGAAAGCCTCAGGCTGGAGCCTGAAGTGGCCCCTCCTTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTACTGGGAAAGCCTCAGGCTGGAGCCTGAAGTGGCCCCTCCTTA  850

seq1  ACTGAATTC  852
      |||||||||
seq2  ACTGAATTC  859