BAC Information

Click to search

BAC

Clone NameB6Ng01-118C18
Chromosome2 (Build37)
Map Location 178,176,282 - 178,317,596
singlet/doubletdoublet
Overlap geneCdh26
Upstream geneLOC668066, LOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik
Downstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413, Cdh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118C18.bB6Ng01-118C18.g
ACCDH922722DH922723
length1,0951,063
definitionDH922722|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C18, 5' end.DH922723|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,176,282 - 178,177,389)(178,316,522 - 178,317,596)
sequence
gaattctttctttagggaaagaagccaggatcatacagtatccttgttag
gtacctgcctgatttagggctcaacagtagataagagtaggggggacatg
aatggaaccctgaatgcctgatttctacagactatacttctgtctgagga
tgcacctttgcactgtggcttctctctctagctttgaggaaactaattct
taacatgcaggtctgtttcactgacccaggcaggcattcacttaaaaaaa
aaatcattcttaactgtagggagagatcattaagatgtttgctttgctac
aggcatgttgataataagcctggcaacctgactgtgatcctgaagaccac
atagaggaaagagaaaaataattgctggaagttgttctccaacctccact
ggcatgcgcacacgcacacacacacacacacacactaaatcacactcaca
aatgatgatgttgatgtaatcatttaagaaagaataagaagggtgaggaa
agtgtgtctcttcctaaaatgttacctgtgtggctgttctcgttctcatt
ctctcaagacgaagcccacgtgagcacataagtatgtgttcttccagata
ctactgtgcggtttagaatgtgaatgtgctcatgccatcttgtgacttgc
ctttctcacttaagggcgtggctgccagattttcttttttttttttttcc
attttttattaggtatttaactcatttacatttccaatgctataccaaaa
gtcccccatatccacccacccccactcccctgcccacccactcccccttt
ttggccctggtgttcccctgtactggggcatataaagtttgcaagtccca
tgggcctctctttccagtgatggccgactaggccatctttttgatatata
tgcagctagagtcaagagctccgggtactggatagttcataatgttgttc
cacctatagggtgcagatcccttagctcctggctactttctctagctctt
catgggagccctatgatcatcatagctgactgtgagcatcacttctgtgt
tgctaggctcggcatagctcacaagagacagctacatctggtcct
gaattcattccttcaagactagaatccaaaaatcccatcctccccaccat
aacaaaccctagggtattaacggactcactctgatataacaaaatgctta
aaccaccaacatttatcttctcacagctctgtctgctcaggtaacattac
ctacggaggcagcgagtttgggtttggagagggcccttctttcagacttc
cagatgaccaccttcctagtgtgtcttcacatgtctttcttctctgtgag
ctgctggaaagcgagatctccaccgtgctaagctcacttagcctcatcac
ttcctgatctagcttcactctgtgttagagcagcaagaacaaagtgggca
tatatttatttattcacttccgggtcacagtccatcattgaggggagtta
ggggacaaacttaagcagaaaccacaaaggaaggttgcccctgggtttca
cagactcatgcttggttagctttcttgaacaactaagaaccacctatcta
gggatgttactacccatggtgagctgggcccttccctgccaatgaataat
taagacagcctctcacagacacgacacaccacaagctgttctgatctaag
gtttccttcagccaagaatcttctgtcagatgcctaaggttgacactaag
gcacctcctcaagccgtgtgtccaaatgcaatcccacaggggttagaaga
acagagcttctgcatatgaacggggcagcatgtgagcctgcgcagcttcc
tggaggggtgagggctggcagcaggaggggtcgttactaggaacttagag
gaaaatgcagagcaaggaagaggagtcgcaggggcctggagagacaacac
agttcacgaactgtttgccacatggacatgaagacccgattggttctgga
acccatataaacagcctatgtagtgtccgccgcttgtgatcaggggttgg
gagcagagtcatgagatccctcagcttgctaccaaccatctcagcctgat
agagagactagccaatgaggaccctgtatccggaaacagtggaaagctcg
ggaagaatgaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_178176282_178177389
seq2: B6Ng01-118C18.b_47_1141

seq1  GAATTCTTTCTTTAGGGAAAGAAGCCAGGATCATACAGTATCCTTGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTTAGGGAAAGAAGCCAGGATCATACAGTATCCTTGTTAG  50

seq1  GTACCTGCCTGATTTAGGGCTCAACAGTAGATAAGAGTAGGGGGGACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGCCTGATTTAGGGCTCAACAGTAGATAAGAGTAGGGGGGACATG  100

seq1  AATGGAACCCTGAATGCCTGATTTCTACAGACTATACTTCTGTCTGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAACCCTGAATGCCTGATTTCTACAGACTATACTTCTGTCTGAGGA  150

seq1  TGCACCTTTGCACTGTGGCTTCTCTCTCTAGCTTTGAGGAAACTAATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTTTGCACTGTGGCTTCTCTCTCTAGCTTTGAGGAAACTAATTCT  200

seq1  TAACATGCAGGTCTGTTTCACTGACCCAGGCAGGCATTCACTTAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGCAGGTCTGTTTCACTGACCCAGGCAGGCATTCACTTAAAAAAA  250

seq1  AAATCATTCTTAACTGTAGGGAGAGATCATTAAGATGTTTGCTTTGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTCTTAACTGTAGGGAGAGATCATTAAGATGTTTGCTTTGCTAC  300

seq1  AGGCATGTTGATAATAAGCCTGGCAACCTGACTGTGATCCTGAAGACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGTTGATAATAAGCCTGGCAACCTGACTGTGATCCTGAAGACCAC  350

seq1  ATAGAGGAAAGAGAAAAATAATTGCTGGAAGTTGTTCTCCAACCTCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGAAAGAGAAAAATAATTGCTGGAAGTTGTTCTCCAACCTCCACT  400

seq1  GGCATGCGCACACGCACACACACACACACACACACTAAATCACACTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCGCACACGCACACACACACACACACACACTAAATCACACTCACA  450

seq1  AATGATGATGTTGATGTAATCATTTAAGAAAGAATAAGAAGGGTGAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGATGTTGATGTAATCATTTAAGAAAGAATAAGAAGGGTGAGGAA  500

seq1  AGTGTGTCTCTTCCTAAAATGTTACCTGTGTGGCTGTTCTCGTTCTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCTCTTCCTAAAATGTTACCTGTGTGGCTGTTCTCGTTCTCATT  550

seq1  CTCTCAAGACGAAGCCCACGTGAGCACATAAGTATGTGTTCTTCCAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAGACGAAGCCCACGTGAGCACATAAGTATGTGTTCTTCCAGATA  600

seq1  CTACTGTGCGGTTTAGAATGTGAATGTGCTCATGCCATCTTGTGACTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGCGGTTTAGAATGTGAATGTGCTCATGCCATCTTGTGACTTGC  650

seq1  CTTTCTCACTTAAGGGCGTGGCTGCCAGATTTTCTTTTTTTTTTTTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCACTTAAGGGCGTGGCTGCCAGATTTTCTTTTTTTTTTTTTTCC  700

seq1  ATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAA  750

seq1  GTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTT  800

seq1  TTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCCA  850

seq1  TGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATC-TTTTGATATATA  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTTGATATATA  900

seq1  TGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTT  949
      |||||||||||||||||||||| ||||||||| |||||||||||||||||
seq2  TGCAGCTAGAGTCAAGAGCTCC-GGGTACTGGATAGTTCATAATGTTGTT  949

seq1  CCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGC  999
      |||||||||||| |||||||||| |||||||| |||||||||||||||||
seq2  CCACCTATAGGG-TGCAGATCCC-TTAGCTCC-TGGCTACTTTCTCTAGC  996

seq1  TCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCC  1049
      || ||   ||||||||||||||| ||||   ||||||||||||||||| |
seq2  TCTTC--ATGGGAGCCCTATGAT-CATC--ATAGCTGACTGTGAGCAT-C  1040

seq1  ACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACAT  1099
      ||||||||| |||||||| | |||||||| ||||||||||||||||||||
seq2  ACTTCTGTG-TTGCTAGG-CTCGGCATAG-CTCACAAGAGACAGCTACAT  1087

seq1  CTGGGTCCT  1108
      || ||||||
seq2  CT-GGTCCT  1095

seq1: chr2_178316522_178317596
seq2: B6Ng01-118C18.g_67_1129 (reverse)

seq1  CCCTCATTCTTCCCGAGCTATCCACCTTGTTTTCCGGATACAGGGTTCCT  50
      ||||||||||||||||||| |||||  || ||||||||||||||| ||||
seq2  CCCTCATTCTTCCCGAGCTTTCCAC--TG-TTTCCGGATACAGGG-TCCT  46

seq1  CATTGGCCTAGTCCTCTCCTATCAGGCTGAGATGGTTGGTTAGCAAGCTG  100
      |||||| ||||| |||| ||||||||||||||||||||| ||||||||||
seq2  CATTGG-CTAGT-CTCT-CTATCAGGCTGAGATGGTTGG-TAGCAAGCTG  92

seq1  AGGGATCCTCATGACTCTGCCTTCCCAACCCCTGATCACAAGCGGCGGAC  150
      |||||| |||||||||||||  ||||||||||||||||||||||||||||
seq2  AGGGAT-CTCATGACTCTGC--TCCCAACCCCTGATCACAAGCGGCGGAC  139

seq1  ACTACATAGGCTGTTTATATGGGTTCCAGGAACCAATCGGGTCTTCATGT  200
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACTACATAGGCTGTTTATATGGGTTCCA-GAACCAATCGGGTCTTCATGT  188

seq1  CCATGTGGCAAACAGTTCGTGAACTGTGTTGTCTCTCCAGGCCCCTGCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGCAAACAGTTCGTGAACTGTGTTGTCTCTCCAGGCCCCTGCGA  238

seq1  CTCCTCTTCCTTGCTCTGCATTTTCCTCTAAGTTCCTAGTAACGACCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTCCTTGCTCTGCATTTTCCTCTAAGTTCCTAGTAACGACCCCT  288

seq1  CCTGCTGCCAGCCCTCACCCCTCCAGGAAGCTGCGCAGGCTCACATGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCCAGCCCTCACCCCTCCAGGAAGCTGCGCAGGCTCACATGCTG  338

seq1  CCCCGTTCATATGCAGAAGCTCTGTTCTTCTAACCCCTGTGGGATTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTTCATATGCAGAAGCTCTGTTCTTCTAACCCCTGTGGGATTGCAT  388

seq1  TTGGACACACGGCTTGAGGAGGTGCCTTAGTGTCAACCTTAGGCATCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACACACGGCTTGAGGAGGTGCCTTAGTGTCAACCTTAGGCATCTGA  438

seq1  CAGAAGATTCTTGGCTGAAGGAAACCTTAGATCAGAACAGCTTGTGGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATTCTTGGCTGAAGGAAACCTTAGATCAGAACAGCTTGTGGTGT  488

seq1  GTCGTGTCTGTGAGAGGCTGTCTTAATTATTCATTGGCAGGGAAGGGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGTCTGTGAGAGGCTGTCTTAATTATTCATTGGCAGGGAAGGGCCC  538

seq1  AGCTCACCATGGGTAGTAACATCCCTAGATAGGTGGTTCTTAGTTGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACCATGGGTAGTAACATCCCTAGATAGGTGGTTCTTAGTTGTTCA  588

seq1  AGAAAGCTAACCAAGCATGAGTCTGTGAAACCCAGGGGCAACCTTCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTAACCAAGCATGAGTCTGTGAAACCCAGGGGCAACCTTCCTTT  638

seq1  GTGGTTTCTGCTTAAGTTTGTCCCCTAACTCCCCTCAATGATGGACTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTCTGCTTAAGTTTGTCCCCTAACTCCCCTCAATGATGGACTGTG  688

seq1  ACCCGGAAGTGAATAAATAAATATATGCCCACTTTGTTCTTGCTGCTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGAAGTGAATAAATAAATATATGCCCACTTTGTTCTTGCTGCTCTA  738

seq1  ACACAGAGTGAAGCTAGATCAGGAAGTGATGAGGCTAAGTGAGCTTAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGTGAAGCTAGATCAGGAAGTGATGAGGCTAAGTGAGCTTAGCA  788

seq1  CGGTGGAGATCTCGCTTTCCAGCAGCTCACAGAGAAGAAAGACATGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGAGATCTCGCTTTCCAGCAGCTCACAGAGAAGAAAGACATGTGAA  838

seq1  GACACACTAGGAAGGTGGTCATCTGGAAGTCTGAAAGAAGGGCCCTCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTAGGAAGGTGGTCATCTGGAAGTCTGAAAGAAGGGCCCTCTCC  888

seq1  AAACCCAAACTCGCTGCCTCCGTAGGTAATGTTACCTGAGCAGACAGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAACTCGCTGCCTCCGTAGGTAATGTTACCTGAGCAGACAGAGC  938

seq1  TGTGAGAAGATAAATGTTGGTGGTTTAAGCATTTTGTTATATCAGAGTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAGATAAATGTTGGTGGTTTAAGCATTTTGTTATATCAGAGTGA  988

seq1  GTCCGTTAATACCCTAGGGTTTGTTATGGTGGGGAGGATGGGATTTTTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTTAATACCCTAGGGTTTGTTATGGTGGGGAGGATGGGATTTTTGG  1038

seq1  ATTCTAGTCTTGAAGGAATGAATTC  1075
      |||||||||||||||||||||||||
seq2  ATTCTAGTCTTGAAGGAATGAATTC  1063