BAC Information

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BAC

Clone NameB6Ng01-118I07
Chromosome2 (Build37)
Map Location 101,400,781 - 101,576,044
singlet/doubletdoublet
Overlap geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik
Upstream geneLOC668705
Downstream geneLOC100043302, Commd9, Ldlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118I07.bB6Ng01-118I07.g
ACCDH922976DH922977
length1,0621,076
definitionDH922976|Mus musculus domesticus DNA, BAC clone: B6Ng01-118I07, 5' end.DH922977|Mus musculus domesticus DNA, BAC clone: B6Ng01-118I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,400,781 - 101,401,844)(101,574,962 - 101,576,044)
sequence
gaattcttttgtacaaactataagcagcatttgtatgaatataaacacac
acaagtcctcatacatgcacaagcacaaactacagcttgactcacaagaa
ccaggatccagaaacaatttaaatgttcagactgatgaataaggagaagt
gtatgtacatgatgtgacactctttattcagcattcagaaggaacaaatc
ctgccacgtgtgaccatgtgaaggaacccagagaatattgtcataagtga
aataagcgagacaccaaagggcagacaatgcatgtccatttccatggggt
gtctccagcagtcgaactcagaaacagaagccatggagaactgagtgtgg
tttcggtagcaggtgggtaagtcctagagatacgccacaatattgtgtac
atggtttgcaatattgaactgtgtgcccaagcattgaagatggtggctct
catgtcttcttaccacaagagacgaaaaggaacagaaataggaaagactc
aaaaccaagcagcaacaagcatactctgtggtgtgtggcttaagtgtagg
ggatcagagaaagggaacggacggcaactatgcttcctaagacgatgata
aaatgtaaaggctacttaaaagaagaaagaataccaagcacacttgctga
tttcctcaataataaatattatttcatacagattgcccaccttatccttc
ttcagtgcctgtatccctctctactcgttccctcggtgaccttatgagtc
atctgcagagttactactccatggtacattttaaaatttttatcttttat
tattagtaggagaaggggggtgcgcttgcctttgcgcctgtggaggtcag
aggacagctttatagagtcatttctctctgtccccctttacgtagttcca
gggactaactaatgtcaacaggcttgcctagcaagcacctctacagagcc
ctctcaccagccccataataccattttacattctctagctgttcttaaac
ttctggagaaagagcctacccctctactttgtactgttagaaatgattta
ctgatacctttt
gaattctggcttttatctgacagtcagagatccttctctggtccagcctg
agctaaggcatgatggcaatttctgcacatatgtactctctgagacccaa
caaagatcaagtaacactacttttcttctttctttttaaagatatattta
tttattatatgtaagtacactgtagctgtcttcagacactccagaagagg
gtgtcagaactcatttcagatggttgtgaaccaccatgtggttgctgaga
tttgaactcaggaccttcagaagaacagtcagtgctcttaatcgctgagc
catctccccagctcaacactacttttcatttgtaatttgtaatcatctta
atggcatagaaagaaagatgtaaaacattgaggtataaattgctttatcc
ctgcttcacacacttatgcataaatgtaaataaatcttcaaaaaatgtga
agccgtctttccaaatcccagggttccagtaaatgagtatgagaaggaca
catacaaaccacagcatactgtgtggagattatactcactctttatatcg
caatgcttagggtcctgcctagggcacagagcctaccaaatgcaaactct
tataactattggcacttttctcccccacccattgccccaaccactggaat
agtcacactccttcttcttactcctttcacatgctcctcactacttttct
tcattaattacttgtgactatgtgagaatctaacatcttccgtaaccatg
taaggtcgattgcctgacatgggatgagcacttaaatgtttaacagatga
aattgaggaagtggccttggggaggagagagcagtgatctttctctctct
tttcccaccttcctttctctcactaatttccacccactgtaatctcctga
caccatggtcccttatacatgggtattttattgtcttcgattattaggca
ggttgagccacaccttgtctaatgccagagaaactggagcctgtcttctg
agaaagcccacaggcctgccaatgcctgtctagtcatcccggagtgcact
gtgaaacttgccctggactccttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101400781_101401844
seq2: B6Ng01-118I07.b_45_1106

seq1  GAATTCTTTTGTACAAACTATAAGCAGCATTTGTATGAATATAAACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTACAAACTATAAGCAGCATTTGTATGAATATAAACACAC  50

seq1  ACAAGTCCTCATACATGCACAAGCACAAACTACAGCTTGACTCACAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCCTCATACATGCACAAGCACAAACTACAGCTTGACTCACAAGAA  100

seq1  CCAGGATCCAGAAACAATTTAAATGTTCAGACTGATGAATAAGGAGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATCCAGAAACAATTTAAATGTTCAGACTGATGAATAAGGAGAAGT  150

seq1  GTATGTACATGATGTGACACTCTTTATTCAGCATTCAGAAGGAACAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACATGATGTGACACTCTTTATTCAGCATTCAGAAGGAACAAATC  200

seq1  CTGCCACGTGTGACCATGTGAAGGAACCCAGAGAATATTGTCATAAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACGTGTGACCATGTGAAGGAACCCAGAGAATATTGTCATAAGTGA  250

seq1  AATAAGCGAGACACCAAAGGGCAGACAATGCATGTCCATTTCCATGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCGAGACACCAAAGGGCAGACAATGCATGTCCATTTCCATGGGGT  300

seq1  GTCTCCAGCAGTCGAACTCAGAAACAGAAGCCATGGAGAACTGAGTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGCAGTCGAACTCAGAAACAGAAGCCATGGAGAACTGAGTGTGG  350

seq1  TTTCGGTAGCAGGTGGGTAAGTCCTAGAGATACGCCACAATATTGTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGTAGCAGGTGGGTAAGTCCTAGAGATACGCCACAATATTGTGTAC  400

seq1  ATGGTTTGCAATATTGAACTGTGTGCCCAAGCATTGAAGATGGTGGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTGCAATATTGAACTGTGTGCCCAAGCATTGAAGATGGTGGCTCT  450

seq1  CATGTCTTCTTACCACAAGAGACGAAAAGGAACAGAAATAGGAAAGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTCTTACCACAAGAGACGAAAAGGAACAGAAATAGGAAAGACTC  500

seq1  AAAACCAAGCAGCAACAAGCATACTCTGTGGTGTGTGGCTTAAGTGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAGCAGCAACAAGCATACTCTGTGGTGTGTGGCTTAAGTGTAGG  550

seq1  GGATCAGAGAAAGGGAACGGACGGCAACTATGCTTCCTAAGACGATGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGAGAAAGGGAACGGACGGCAACTATGCTTCCTAAGACGATGATA  600

seq1  AAATGTAAAGGCTACTTAAAAGAAGAAAGAATACCAAGCACACTTGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAAGGCTACTTAAAAGAAGAAAGAATACCAAGCACACTTGCTGA  650

seq1  TTTCCTCAATAATAAATATTATTTCATACAGATTGCCCACCTTATCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAATAATAAATATTATTTCATACAGATTGCCCACCTTATCCTTC  700

seq1  TTCAGTGCCTGTATCCCTCTCTACTCGTTCCCTCGGTGACCTTATGAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCCTGTATCCCTCTCTACTCGTTCCCTCGGTGACCTTATGAGTC  750

seq1  ATCTGCAGAGTTACTACTCCATGGTACATTTTAAAATTTTTATCTTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAGAGTTACTACTCCATGGTACATTTTAAAATTTTTATCTTTTAT  800

seq1  TATTAGTAGGAGAAGGGGGGTGCGCTTGCCTTTGCGCCTGTGGAGGTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTAGGAGAAGGGGGGTGCGCTTGCCTTTGCGCCTGTGGAGGTCAG  850

seq1  AGGACAGCTTTATAGAGTCATTTCTCTCTGTCCCCCTTTACGTAGTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCTTTATAGAGTCATTTCTCTCTGTCCCCCTTTACGTAGTTCCA  900

seq1  GGGACTAACTAAGGTCAACAGGCTTGCCTAGCAAGCACCTCTACAGAGCC  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGGACTAACTAATGTCAACAGGCTTGCCTAGCAAGCACCTCTACAGAGCC  950

seq1  CTCTCACCAGCCCCATAATACCATTTTACATTCTCTAGCTGTTCTTAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCAGCCCCATAATACCATTTTACATTCTCTAGCTGTTCTTAAAC  1000

seq1  TTCTGGAGACAGAGCCTACTCACTCTACTTTGTAACTGTCAGATATGATT  1050
      ||||||||| ||||||||| | ||||||||||| ||||| ||| ||||||
seq2  TTCTGGAGAAAGAGCCTAC-CCCTCTACTTTGT-ACTGTTAGAAATGATT  1048

seq1  TACTGATAACTTTT  1064
      |||||||| |||||
seq2  TACTGATACCTTTT  1062

seq1: chr2_101574962_101576044
seq2: B6Ng01-118I07.g_69_1144 (reverse)

seq1  CTCAAGGAGTCCAGGGCAAGTGTTCACAGTGCACT-CGGGATGGACTAGA  49
      ||||||||||||||||||||| ||||||||||||| |||||| |||||| 
seq2  CTCAAGGAGTCCAGGGCAAGT-TTCACAGTGCACTCCGGGAT-GACTAG-  47

seq1  ACAGGCATTGGCAAGGCCTGTGGGCTGTCTCAGAAGACCAGGCTCCAGTT  99
      |||||||||||| ||||||||||||| |||||||||| ||||||||||||
seq2  ACAGGCATTGGC-AGGCCTGTGGGCTTTCTCAGAAGA-CAGGCTCCAGTT  95

seq1  TCCTCTGGCATTAAGACAAGGTGTGGCTCAACCTGCCTAATTAATCGAAG  149
      | |||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  T-CTCTGGCATT-AGACAAGGTGTGGCTCAACCTGCCTAA-TAATCGAAG  142

seq1  ACAATAAAATACCCATGTAATAGGGACCATGGTGTCAGGAGATTACAGTG  199
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  ACAATAAAATACCCATGTATAAGGGACCATGGTGTCAGGAGATTACAGTG  192

seq1  GGTGGAAATTAGTGAGAGAAAGGAAGGTGGGAAAAGAGAGAGAAAGATCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAATTAGTGAGAGAAAGGAAGGTGGGAAAAGAGAGAGAAAGATCA  242

seq1  CTGCTCTCTCCTCCCCAAGGCCACTTCCTCAATTTCATCTGTTAAACATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCTCCTCCCCAAGGCCACTTCCTCAATTTCATCTGTTAAACATT  292

seq1  TAAGTGCTCATCCCATGTCAGGCAATCGACCTTACATGGTTACGGAAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCTCATCCCATGTCAGGCAATCGACCTTACATGGTTACGGAAGAT  342

seq1  GTTAGATTCTCACATAGTCACAAGTAATTAATGAAGAAAAGTAGTGAGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATTCTCACATAGTCACAAGTAATTAATGAAGAAAAGTAGTGAGGA  392

seq1  GCATGTGAAAGGAGTAAGAAGAAGGAGTGTGACTATTCCAGTGGTTGGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGAAAGGAGTAAGAAGAAGGAGTGTGACTATTCCAGTGGTTGGGG  442

seq1  CAATGGGTGGGGGAGAAAAGTGCCAATAGTTATAAGAGTTTGCATTTGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGTGGGGGAGAAAAGTGCCAATAGTTATAAGAGTTTGCATTTGGT  492

seq1  AGGCTCTGTGCCCTAGGCAGGACCCTAAGCATTGCGATATAAAGAGTGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGTGCCCTAGGCAGGACCCTAAGCATTGCGATATAAAGAGTGAG  542

seq1  TATAATCTCCACACAGTATGCTGTGGTTTGTATGTGTCCTTCTCATACTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTCCACACAGTATGCTGTGGTTTGTATGTGTCCTTCTCATACTC  592

seq1  ATTTACTGGAACCCTGGGATTTGGAAAGACGGCTTCACATTTTTTGAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGGAACCCTGGGATTTGGAAAGACGGCTTCACATTTTTTGAAGA  642

seq1  TTTATTTACATTTATGCATAAGTGTGTGAAGCAGGGATAAAGCAATTTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTACATTTATGCATAAGTGTGTGAAGCAGGGATAAAGCAATTTAT  692

seq1  ACCTCAATGTTTTACATCTTTCTTTCTATGCCATTAAGATGATTACAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAATGTTTTACATCTTTCTTTCTATGCCATTAAGATGATTACAAAT  742

seq1  TACAAATGAAAAGTAGTGTTGAGCTGGGGAGATGGCTCAGCGATTAAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGAAAAGTAGTGTTGAGCTGGGGAGATGGCTCAGCGATTAAGAG  792

seq1  CACTGACTGTTCTTCTGAAGGTCCTGAGTTCAAATCTCAGCAACCACATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTGTTCTTCTGAAGGTCCTGAGTTCAAATCTCAGCAACCACATG  842

seq1  GTGGTTCACAACCATCTGAAATGAGTTCTGACACCCTCTTCTGGAGTGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCACAACCATCTGAAATGAGTTCTGACACCCTCTTCTGGAGTGTC  892

seq1  TGAAGACAGCTACAGTGTACTTACATATAATAAATAAATATATCTTTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGCTACAGTGTACTTACATATAATAAATAAATATATCTTTAAA  942

seq1  AAGAAAGAAGAAAAGTAGTGTTACTTGATCTTTGTTGGGTCTCAGAGAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAGAAAAGTAGTGTTACTTGATCTTTGTTGGGTCTCAGAGAGT  992

seq1  ACATATGTGCAGAAATTGCCATCATGCCTTAGCTCAGGCTGGACCAGAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTGCAGAAATTGCCATCATGCCTTAGCTCAGGCTGGACCAGAGA  1042

seq1  AGGATCTCTGACTGTCAGATAAAAGCCAGAATTC  1083
      ||||||||||||||||||||||||||||||||||
seq2  AGGATCTCTGACTGTCAGATAAAAGCCAGAATTC  1076