BAC Information

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BAC

Clone NameB6Ng01-119H24
Chromosome2 (Build37)
Map Location 53,711,899 - 53,838,679
singlet/doubletdoublet
Overlap genenone
Upstream geneFmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933
Downstream geneRprm, LOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119H24.bB6Ng01-119H24.g
ACCDH923696DH923697
length1,1021,091
definitionDH923696|Mus musculus domesticus DNA, BAC clone: B6Ng01-119H24, 5' end.DH923697|Mus musculus domesticus DNA, BAC clone: B6Ng01-119H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,711,899 - 53,713,004)(53,837,566 - 53,838,679)
sequence
gaattctcatgttaatactgatttgtgatacttgaccaagttagaataaa
gggacttccccacactgctagtgaatttgttctgctgcccatatagtctt
atagccctggaaatgagctttgaattagagagagaagatcatttgcaaga
cgttttagataactagattgatgcatgggtatgccagtacaagtctcaat
aatatgaagtgaaagatatggttgataaactctaaattttgattttaaaa
gatgattttccagttctcatgtaggaaatctgaggtctgcatataattgg
tctccaagtttctcatgctgtagttctagagaaatgccctaaactatgat
agatcctctgagcatgtttagtatgtcagacatagcaagtactgttagat
gacagtgatagaatctgctccacagtacagaactccaaagcctgacttta
aatgagttcctaccacccattatcttatttaggttgggcatcaacatggc
tcaacaacactcagtgttctaatgtgtacataaaatcccataccattaca
ctgtagacattatgagtagaaactgacagttttgtttcaataacctttat
atttgtagttttcaaaacctactttaataagcacacgtaaatactttaac
ctcccttctagcctaccacccatcagaggtagtggaagggaaagcttaat
agggcaaaggaggatgtgaaactgtttagaaatagttctttggggtaaat
ccaattggtgttgtcaggatatcagcagctcagttcacacaaatcagcaa
gggtagctcatatgtgtgcaaacaccattcatgaatcagcaaccacattt
tgattcagaaggaatcacaaaaccctgacaattagccagagtctgcagat
gtaccaagaagctaccaaacaccaccagaagtttttttggttcatttctc
tctgtgaagtcatgacaaacatgaccagcaaagagtggcaaagcaaacca
ttaccacacagtgtcagtgaagaccacattagcaaagcccagcaaggagt
gacaaggtgaccataccacatagcatcattctttgtctgtttggttatat
tt
gaattccatattcattgagaaaaacccattttcctccttgcaagccacat
acaatcagcaaacaccgacacagcagatatgcttttaattagagacaaac
tcattgggaaggggtctgacttccctgttcctttttatttgcagagaaaa
tgacaatctactgggtactgaatggtatttgaaaggccgggtgcacaaat
ctctgcccaccagaagtatatttatactcaagtcaactaaaatgatacaa
gaaatgtgacatgcagaaataatagaggtgtatccccaaaagcctgccca
atggcagaaatgagcaccacatacatttggatgatactagataacacatc
acttcatttttccatgagaaaaattttgtccctaaaagtatagactagaa
aaatttaatgttagcatttaatgagttctgtttcttggattcagtctcaa
gcccacacacattgatgaattttttaaccaataagttatcctctcatagt
taataatcaaagagccaaatattatattcatttatcctatgatgttatta
atatacaattataaataactgaccttttcctgaattccaaatttattctc
atagagaaattatatggatgcatagtttattatattatatataatagtag
tgagttgttaaatatgtctagcagattttttcaaatggccagagtttgtt
ttgtgcaaaacttaagtaagtaaagttggaaagtattctgaaaggaacaa
gaagcatggcttgcttagcaaagaaaaatattggcagctatatgccaaga
tttgggggctgggcaggtatagggtcagctgcctgatggttattttgcta
ttaaagtccctgactcatttgcttttgccactctacaagcacatgttggc
ttcatcctaagctaattagccttgctttcataaagacaaaagctctagca
aaactttaaaatagttagctgtgatcattgaagtcacagtcactctgaat
gatacagcaacagaattttgctatgcacagtgacactgaacagtgtcact
gccagttcatatgacgtgaatgtctgcagtatttggtaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_53711899_53713004
seq2: B6Ng01-119H24.b_50_1151

seq1  GAATTCTCATGTTAATACTGATTTGTGATACTTGACCAAGTTAGAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGTTAATACTGATTTGTGATACTTGACCAAGTTAGAATAAA  50

seq1  GGGACTTCCCCACACTGCTAGTGAATTTGTTCTGCTGCCCATATAGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTCCCCACACTGCTAGTGAATTTGTTCTGCTGCCCATATAGTCTT  100

seq1  ATAGCCCTGGAAATGAGCTTTGAATTAGAGAGAGAAGATCATTTGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTGGAAATGAGCTTTGAATTAGAGAGAGAAGATCATTTGCAAGA  150

seq1  CGTTTTAGATAACTAGATTGATGCATGGGTATGCCAGTACAAGTCTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTAGATAACTAGATTGATGCATGGGTATGCCAGTACAAGTCTCAAT  200

seq1  AATATGAAGTGAAAGATATGGTTGATAAACTCTAAATTTTGATTTTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAGTGAAAGATATGGTTGATAAACTCTAAATTTTGATTTTAAAA  250

seq1  GATGATTTTCCAGTTCTCATGTAGGAAATCTGAGGTCTGCATATAATTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTTCCAGTTCTCATGTAGGAAATCTGAGGTCTGCATATAATTGG  300

seq1  TCTCCAAGTTTCTCATGCTGTAGTTCTAGAGAAATGCCCTAAACTATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGTTTCTCATGCTGTAGTTCTAGAGAAATGCCCTAAACTATGAT  350

seq1  AGATCCTCTGAGCATGTTTAGTATGTCAGACATAGCAAGTACTGTTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTCTGAGCATGTTTAGTATGTCAGACATAGCAAGTACTGTTAGAT  400

seq1  GACAGTGATAGAATCTGCTCCACAGTACAGAACTCCAAAGCCTGACTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGATAGAATCTGCTCCACAGTACAGAACTCCAAAGCCTGACTTTA  450

seq1  AATGAGTTCCTACCACCCATTATCTTATTTAGGTTGGGCATCAACATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTTCCTACCACCCATTATCTTATTTAGGTTGGGCATCAACATGGC  500

seq1  TCAACAACACTCAGTGTTCTAATGTGTACATAAAATCCCATACCATTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAACACTCAGTGTTCTAATGTGTACATAAAATCCCATACCATTACA  550

seq1  CTGTAGACATTATGAGTAGAAACTGACAGTTTTGTTTCAATAACCTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACATTATGAGTAGAAACTGACAGTTTTGTTTCAATAACCTTTAT  600

seq1  ATTTGTAGTTTTCAAAACCTACTTTAATAAGCACACGTAAATACTTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAGTTTTCAAAACCTACTTTAATAAGCACACGTAAATACTTTAAC  650

seq1  CTCCCTTCTAGCCTACCACCCATCAGAGGTAGTGGAAGGGAAAGCTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCTAGCCTACCACCCATCAGAGGTAGTGGAAGGGAAAGCTTAAT  700

seq1  AGGGCAAAGGAGGATGTGAAACTGTTTAGAAATAGTTCTTTGGGGTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAAGGAGGATGTGAAACTGTTTAGAAATAGTTCTTTGGGGTAAAT  750

seq1  CCAATTGGTGTTGTCAGGATATCAGCAGCTCAGTTCACACAAATCAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGGTGTTGTCAGGATATCAGCAGCTCAGTTCACACAAATCAGCAA  800

seq1  GGGTAGCTCATATGTGTGCAAACACCATTCATGAATCAGCAACCACATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCTCATATGTGTGCAAACACCATTCATGAATCAGCAACCACATTT  850

seq1  TGATTCAGAAGGAATCACAAAACCCTGACAATTAGCCAGAGTCTGCAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAGAAGGAATCACAAAACCCTGACAATTAGCCAGAGTCTGCAGAT  900

seq1  GTACCAAGAAGCTACCAAACACCACCAGAAGTTTTTTTGGTTCATTTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAGAAGCTACCAAACACCACCAGAAGTTTTTTTGGTTCATTTCTC  950

seq1  TCTGTGAAGTCATGACAAACAATGACCAGCAAAGAGTGGCAAAGCAAACC  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTGTGAAGTCATGACAAAC-ATGACCAGCAAAGAGTGGCAAAGCAAACC  999

seq1  ATTACCACACAGTGTCAGTGAAGACCAACATTAGCAAAGCCCAGCAAAGA  1050
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  ATTACCACACAGTGTCAGTGAAGACC-ACATTAGCAAAGCCCAGCAAGGA  1048

seq1  GTGACAAGGTGAACCAATACCACATAGCATCATTCTTTGTCTGTTGGGTT  1100
      ||||||||||||  | ||||||||||||||||||||||||||||| ||||
seq2  GTGACAAGGTGA--CCATACCACATAGCATCATTCTTTGTCTGTTTGGTT  1096

seq1  ATATTT  1106
      ||||||
seq2  ATATTT  1102

seq1: chr2_53837566_53838679
seq2: B6Ng01-119H24.g_65_1155 (reverse)

seq1  TTTTACCAAAAATTTACTGCAGACATTTCACGTCATTATGAAACTCGCAG  50
      ||||||||||    ||||||||||| ||||||||| |||| |||| ||||
seq2  TTTTACCAAA----TACTGCAGACA-TTCACGTCA-TATG-AACTGGCAG  43

seq1  TGAACACTGGTTCAGTGTCACTGGTGCATAGCAAAATTCTGGTGGCTTGT  100
      || ||||| ||||||||||||| |||||||||||||||||| ||   |||
seq2  TG-ACACT-GTTCAGTGTCACT-GTGCATAGCAAAATTCTGTTG--CTGT  88

seq1  ATCCATTCAGAGTGGACTGGTGACTTCAATTGATCACAGCTAACTAATTT  150
      || |||||||||| |||| |||||||||| ||||||||||||||| ||||
seq2  AT-CATTCAGAGT-GACT-GTGACTTCAA-TGATCACAGCTAACT-ATTT  133

seq1  TAAAGGTTTTTGCTAGAGCCTTTTGTCTTTATTGAAAGCAAGGCTAATTA  200
      |||||  ||||||||||| |||||||||||| ||||||||||||||||||
seq2  TAAAG--TTTTGCTAGAG-CTTTTGTCTTTA-TGAAAGCAAGGCTAATTA  179

seq1  GCCTTAGGATGAAGCCAACATGTGCTTGTAGAGGTGGCAAAAGCAAATGA  250
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  G-CTTAGGATGAAGCCAACATGTGCTTGTAGA-GTGGCAAAAGCAAATGA  227

seq1  GTCAGGGACTTTAATAGCAAAATAACCATCAGGCAGCTGACCCTATACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGACTTTAATAGCAAAATAACCATCAGGCAGCTGACCCTATACCT  277

seq1  GCCCAGCCCCCAAATCTTGGCATATAGCTGCCAATATTTTTCTTTGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCCCCCAAATCTTGGCATATAGCTGCCAATATTTTTCTTTGCTAA  327

seq1  GCAAGCCATGCTTCTTGTTCCTTTCAGAATACTTTCCAACTTTACTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCATGCTTCTTGTTCCTTTCAGAATACTTTCCAACTTTACTTACT  377

seq1  TAAGTTTTGCACAAAACAAACTCTGGCCATTTGAAAAAATCTGCTAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTGCACAAAACAAACTCTGGCCATTTGAAAAAATCTGCTAGACA  427

seq1  TATTTAACAACTCACTACTATTATATATAATATAATAAACTATGCATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACAACTCACTACTATTATATATAATATAATAAACTATGCATCCA  477

seq1  TATAATTTCTCTATGAGAATAAATTTGGAATTCAGGAAAAGGTCAGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTCTCTATGAGAATAAATTTGGAATTCAGGAAAAGGTCAGTTAT  527

seq1  TTATAATTGTATATTAATAACATCATAGGATAAATGAATATAATATTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTGTATATTAATAACATCATAGGATAAATGAATATAATATTTGG  577

seq1  CTCTTTGATTATTAACTATGAGAGGATAACTTATTGGTTAAAAAATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGATTATTAACTATGAGAGGATAACTTATTGGTTAAAAAATTCAT  627

seq1  CAATGTGTGTGGGCTTGAGACTGAATCCAAGAAACAGAACTCATTAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGTGTGGGCTTGAGACTGAATCCAAGAAACAGAACTCATTAAATG  677

seq1  CTAACATTAAATTTTTCTAGTCTATACTTTTAGGGACAAAATTTTTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATTAAATTTTTCTAGTCTATACTTTTAGGGACAAAATTTTTCTCA  727

seq1  TGGAAAAATGAAGTGATGTGTTATCTAGTATCATCCAAATGTATGTGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAATGAAGTGATGTGTTATCTAGTATCATCCAAATGTATGTGGTG  777

seq1  CTCATTTCTGCCATTGGGCAGGCTTTTGGGGATACACCTCTATTATTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCTGCCATTGGGCAGGCTTTTGGGGATACACCTCTATTATTTCT  827

seq1  GCATGTCACATTTCTTGTATCATTTTAGTTGACTTGAGTATAAATATACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCACATTTCTTGTATCATTTTAGTTGACTTGAGTATAAATATACT  877

seq1  TCTGGTGGGCAGAGATTTGTGCACCCGGCCTTTCAAATACCATTCAGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGGCAGAGATTTGTGCACCCGGCCTTTCAAATACCATTCAGTAC  927

seq1  CCAGTAGATTGTCATTTTCTCTGCAAATAAAAAGGAACAGGGAAGTCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGATTGTCATTTTCTCTGCAAATAAAAAGGAACAGGGAAGTCAGA  977

seq1  CCCCTTCCCAATGAGTTTGTCTCTAATTAAAAGCATATCTGCTGTGTCGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCCAATGAGTTTGTCTCTAATTAAAAGCATATCTGCTGTGTCGG  1027

seq1  TGTTTGCTGATTGTATGTGGCTTGCAAGGAGGAAAATGGGTTTTTCTCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTGATTGTATGTGGCTTGCAAGGAGGAAAATGGGTTTTTCTCAA  1077

seq1  TGAATATGGAATTC  1114
      ||||||||||||||
seq2  TGAATATGGAATTC  1091