BAC Information

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BAC

Clone NameB6Ng01-120D19
Chromosome2 (Build37)
Map Location 75,443,500 - 75,554,908
singlet/doubletdoublet
Overlap geneLOC667828, Hnrpa3, Nfe2l2, E030042O20Rik
Upstream geneLOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324
Downstream geneLOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120D19.bB6Ng01-120D19.g
ACCDH924233DH924234
length1,133812
definitionDH924233|Mus musculus domesticus DNA, BAC clone: B6Ng01-120D19, 5' end.DH924234|Mus musculus domesticus DNA, BAC clone: B6Ng01-120D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,443,500 - 75,444,639)(75,554,098 - 75,554,908)
sequence
gaattcctgtccacactagaaatatgtgctgcttagaagcaaacataaat
tccacttacagggttcctcggggctgttctggtgaggttcatagtcacca
cgtggcttaggtatgtattcaaacctatctacaaatgaaaaaacaaaagg
ctcaaaagtcattggcaaaatctgaactgctctatcgaatgccaggaatc
taaagaaacaaatggtctcaaatcctttaggaaagtgcttgcgtttgtct
ggcctctcctccctttgcctctcgcctactggtctttctgaattcatcta
taattccttctattcctcgctgaccgattgcaagaattcccccattgtgt
tgatgaagaaaaacgtgggagaaacaggagaaaggcaattggcaaaacaa
gactttggggtttgaacatgactgtgcagttcctcactactaccactagc
tggcgccaaagctctaaagatgtgatgatatattgcgtcccagcttgtta
attaataaaactgttttcaaactgctagtagttatacaaggaaaagcata
aataaatttgagaataaaggcataaaataatttgacctaactcagtagca
aagaggcagacatttcgctgaaaataactgcactgtatgctttttttttg
tcttctaaagaaataaaaatgtgttattaaagaatacatgagtcttgctt
tttaaatcttatccaaacaataaagcagaaaggatgcctgccccctccac
acaaactacttataatacaatacagtataaagctgtaaaaaaaaaaaaat
ctggctatacaatattccgctaacttaaattttcagtaatgtctttggtc
taaaccagaaatgactcccatgtcggggtcacagggaacatggcatatct
ttctccccagcatccagctttcctcttagtacacacatcccagcagcttg
gatggttcctgtccttccacacactagcgagcttgcagaacgctgggcct
ggagtctagctcagtcgtgctacagtgagcagccaggcgcagctcagtaa
cgctgcttgctggttaggacagcccttgagtaatgttgcaacagttttgc
atattgtttatacttgtaaactgccaattgtgg
gaattccagtgctttgtgcgtatagtttgcacagtgaggtgtcttaagtc
caagactcaaggttatgggcgtgtttggaagttaacacaccaattatcct
gcaccctgatgtgctggagttcagtttatctactgggcaggcggctcctc
gagttcaaatttccttagtagcctttcacaaagcatcttacgtaacctga
gtaaatgaggtcaggcagggtcaatatctgggtatgcatttgcatcacca
tctagtcctaagcagatggtgtctgtgctctgtgtgtttaatgagagtat
cttaccagcatctattggacagaaagtaaggcctggagtgatgaggtcat
ttgctctgttggtagcaacagatatatattatgggaaaaatactttcctc
agtcttagaaaagtaagttcttttctgagggtctggaggttttatttaaa
gtaatcactaagagcggtccctgtgcgtgttctcagtggcagttaataaa
caaggcacccaggaggcacactgcctctgagactcaacatatgctcatca
gatcaccctactgttacgaaacaaaccacctaatactcagtagttggcag
tgatttatgtaatctgtcacaggtctgtggagttgacagtccaaacaggc
aggcttctgttacctggcagcaatctccttgtgcctagggctagaatcct
ctagggcttgagatggcaggcatggaaggtccaagggccagggcaatttg
ttcctttttttttttaatataaaaaaatgtattatgtgtgtgtgtgtgtg
tgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75443500_75444639
seq2: B6Ng01-120D19.b_48_1180

seq1  GAATTCCTGTCCACACTAGAAATATGTGCTGCTTAGAAGCAAACATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCCACACTAGAAATATGTGCTGCTTAGAAGCAAACATAAAT  50

seq1  TCCACTTACAGGGTTCCTCGGGGCTGTTCTGGTGAGGTTCATAGTCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTACAGGGTTCCTCGGGGCTGTTCTGGTGAGGTTCATAGTCACCA  100

seq1  CGTGGCTTAGGTATGTATTCAAACCTATCTACAAATGAAAAAACAAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTTAGGTATGTATTCAAACCTATCTACAAATGAAAAAACAAAAGG  150

seq1  CTCAAAAGTCATTGGCAAAATCTGAACTGCTCTATCGAATGCCAGGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGTCATTGGCAAAATCTGAACTGCTCTATCGAATGCCAGGAATC  200

seq1  TAAAGAAACAAATGGTCTCAAATCCTTTAGGAAAGTGCTTGCGTTTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAACAAATGGTCTCAAATCCTTTAGGAAAGTGCTTGCGTTTGTCT  250

seq1  GGCCTCTCCTCCCTTTGCCTCTCGCCTACTGGTCTTTCTGAATTCATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCCTCCCTTTGCCTCTCGCCTACTGGTCTTTCTGAATTCATCTA  300

seq1  TAATTCCTTCTATTCCTCGCTGACCGATTGCAAGAATTCCCCCATTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTTCTATTCCTCGCTGACCGATTGCAAGAATTCCCCCATTGTGT  350

seq1  TGATGAAGAAAAACGTGGGAGAAACAGGAGAAAGGCAATTGGCAAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAGAAAAACGTGGGAGAAACAGGAGAAAGGCAATTGGCAAAACAA  400

seq1  GACTTTGGGGTTTGAACATGACTGTGCAGTTCCTCACTACTACCACTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGGGGTTTGAACATGACTGTGCAGTTCCTCACTACTACCACTAGC  450

seq1  TGGCGCCAAAGCTCTAAAGATGTGATGATATATTGCGTCCCAGCTTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCCAAAGCTCTAAAGATGTGATGATATATTGCGTCCCAGCTTGTTA  500

seq1  ATTAATAAAACTGTTTTCAAACTGCTAGTAGTTATACAAGGAAAAGCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAAAACTGTTTTCAAACTGCTAGTAGTTATACAAGGAAAAGCATA  550

seq1  AATAAATTTGAGAATAAAGGCATAAAATAATTTGACCTAACTCAGTAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTTGAGAATAAAGGCATAAAATAATTTGACCTAACTCAGTAGCA  600

seq1  AAGAGGCAGACATTTCGCTGAAAATAACTGCACTGTATGCTTTTTTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCAGACATTTCGCTGAAAATAACTGCACTGTATGCTTTTTTTTTG  650

seq1  TCTTCTAAAGAAATAAAAATGTGTTATTAAAGAATACATGAGTCTTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAAAGAAATAAAAATGTGTTATTAAAGAATACATGAGTCTTGCTT  700

seq1  TTTAAATCTTATCCAAACAATAAAGCAGAAAGGATGCCTGCCCCCTCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCTTATCCAAACAATAAAGCAGAAAGGATGCCTGCCCCCTCCAC  750

seq1  ACAAACTACTTATAATACAATACAGTATAAAGCTGTAAAAAAAAAAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTACTTATAATACAATACAGTATAAAGCTGTAAAAAAAAAAAAAT  800

seq1  CTGGCTATACAATATTCCGCTAACTTAAATTTTCAGTAATGTCTTTGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTATACAATATTCCGCTAACTTAAATTTTCAGTAATGTCTTTGGTC  850

seq1  TAAACCAGAAATGACTCCCATGTCGGGGTCACAGGGAACATGGCATATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGAAATGACTCCCATGTCGGGGTCACAGGGAACATGGCATATCT  900

seq1  TTCTCCCCAGCATCCAGCTTTCCTCTTAGTACACACATCCCAGCAGCTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCAGCATCCAGCTTTCCTCTTAGTACACACATCCCAGCAGCTTG  950

seq1  GATGGTTCCTGTCCTTCCACACACTAGCGAGCTTGCAGAACGCTGGGCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTCCTGTCCTTCCACACACTAGCGAGCTTGCAGAACGCTGGGCCT  1000

seq1  GGAGTCTAGCCTCAGTCGTGGCTACAGTGAGCAGCCAGGCGGCCAGCTCA  1050
      ||||||||| ||||||||| |||||||||||||||||||||  |||||||
seq2  GGAGTCTAG-CTCAGTCGT-GCTACAGTGAGCAGCCAGGCG--CAGCTCA  1046

seq1  GTAACGCTGCCTTGCTGGTTTAGGACAAGGCCCCTGAGTAAATGTGCAAA  1100
      ||||||||| |||||||| ||||||||  |||| ||||| |||||   ||
seq2  GTAACGCTG-CTTGCTGG-TTAGGACA--GCCCTTGAGT-AATGTTGCAA  1091

seq1  CAGTTTTGCATATTGTTTATAC-TGTAAACTGCC-ATTGTGG  1140
      |||||||||||||||||||||| ||||||||||| |||||||
seq2  CAGTTTTGCATATTGTTTATACTTGTAAACTGCCAATTGTGG  1133

seq1: chr2_75554098_75554908
seq2: B6Ng01-120D19.g_66_877 (reverse)

seq1  CACACACACACACACACACACACACACATAATACATTTTTTTATATT-AA  49
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CACACACACACACACACACACACACACATAATACATTTTTTTATATTAAA  50

seq1  AAAAAAAAGGAACAAATTGCCCTGGCCCTTGGACCTTCCATGCCTGCCAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGGAACAAATTGCCCTGGCCCTTGGACCTTCCATGCCTGCCAT  100

seq1  CTCAAGCCCTAGAGGATTCTAGCCCTAGGCACAAGGAGATTGCTGCCAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCCCTAGAGGATTCTAGCCCTAGGCACAAGGAGATTGCTGCCAGG  150

seq1  TAACAGAAGCCTGCCTGTTTGGACTGTCAACTCCACAGACCTGTGACAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAAGCCTGCCTGTTTGGACTGTCAACTCCACAGACCTGTGACAGA  200

seq1  TTACATAAATCACTGCCAACTACTGAGTATTAGGTGGTTTGTTTCGTAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAAATCACTGCCAACTACTGAGTATTAGGTGGTTTGTTTCGTAAC  250

seq1  AGTAGGGTGATCTGATGAGCATATGTTGAGTCTCAGAGGCAGTGTGCCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGTGATCTGATGAGCATATGTTGAGTCTCAGAGGCAGTGTGCCTC  300

seq1  CTGGGTGCCTTGTTTATTAACTGCCACTGAGAACACGCACAGGGACCGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGCCTTGTTTATTAACTGCCACTGAGAACACGCACAGGGACCGCT  350

seq1  CTTAGTGATTACTTTAAATAAAACCTCCAGACCCTCAGAAAAGAACTTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGATTACTTTAAATAAAACCTCCAGACCCTCAGAAAAGAACTTAC  400

seq1  TTTTCTAAGACTGAGGAAAGTATTTTTCCCATAATATATATCTGTTGCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAGACTGAGGAAAGTATTTTTCCCATAATATATATCTGTTGCTA  450

seq1  CCAACAGAGCAAATGACCTCATCACTCCAGGCCTTACTTTCTGTCCAATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGAGCAAATGACCTCATCACTCCAGGCCTTACTTTCTGTCCAATA  500

seq1  GATGCTGGTAAGATACTCTCATTAAACACACAGAGCACAGACACCATCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGTAAGATACTCTCATTAAACACACAGAGCACAGACACCATCTG  550

seq1  CTTAGGACTAGATGGTGATGCAAATGCATACCCAGATATTGACCCTGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGACTAGATGGTGATGCAAATGCATACCCAGATATTGACCCTGCCT  600

seq1  GACCTCATTTACTCAGGTTACGTAAGATGCTTTGTGAAAGGCTACTAAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCATTTACTCAGGTTACGTAAGATGCTTTGTGAAAGGCTACTAAGG  650

seq1  AAATTTGAACTCGAGGAGCCGCCTGCCCAGTAGATAAACTGAACTCCAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAACTCGAGGAGCCGCCTGCCCAGTAGATAAACTGAACTCCAGC  700

seq1  ACATCAGGGTGCAGGATAATTGGTGTGTTAACTTCCAAACACGCCCATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGGGTGCAGGATAATTGGTGTGTTAACTTCCAAACACGCCCATAA  750

seq1  CCTTGAGTCTTGGACTTAAGACACCTCACTGTGCAAACTATACGCACAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGTCTTGGACTTAAGACACCTCACTGTGCAAACTATACGCACAAA  800

seq1  GCACTGGAATTC  811
      ||||||||||||
seq2  GCACTGGAATTC  812