BAC Information

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BAC

Clone NameB6Ng01-120G22
Chromosome2 (Build37)
Map Location 171,034,461 - 171,131,598
singlet/doubletdoublet
Overlap geneLOC100043743
Upstream geneSilg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955
Downstream geneLOC100043744, Cbln4, Mc3r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120G22.bB6Ng01-120G22.g
ACCDH924379DH924380
length1,1201,102
definitionDH924379|Mus musculus domesticus DNA, BAC clone: B6Ng01-120G22, 5' end.DH924380|Mus musculus domesticus DNA, BAC clone: B6Ng01-120G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,034,461 - 171,035,987)(171,130,503 - 171,131,598)
sequence
gaattcagctcctcaggtatctatgatcagcatttacccactgagtcatt
tttacatccttgtattcaattttaaacatatgtccaaacattgggtaaaa
tatctgtgaatcttatcatgtttttaatcatcttaattgatattcaactt
tagtagatgatgttcttgctttagaaaaaaaattagagacccactactgg
tatccccaccaacaagccctgatgggatactctcttaatcatgggatctt
tccatatcttggtctgtacaactctgtaatggggtcattagcatgaataa
atgatgagacggagaacacaggaacatagataaaatctacactaccaaga
aaagtttcaggggacttctactttttccagagcatgatcaggcagcctag
atttagctgcatgtcaatctccacgtccaccctttaagtgttaataaggt
ttcaacacagaacatttgaatctcagcaagcccgtggctcatgctcctga
aatgctcaataatcaccatgcgattttattcctccctactgggtcttttt
aaaaccagaaaggaaaacatcctgggctaaagtctttttttttttttttt
catcttagcttaagcttaatggtgccagagtcacctggtttttgcatgag
attgttgacacagagataataagtttccacctggtgactcaattattttt
aatgatttacacaaaataattactgctgacaaatgtccagctcctcagaa
gaaggaaacagctatgcccgtgtccagttttgtgtcttccatccatcaca
gctttacaaatggatggacggacattagtgactgaggactgtgaagactg
agttgcagacaccaggcaaataaagcctctgatgcgcatgcacagaagtg
ggccttgaagagtggtggtcaagatgggtaaaaaggcaaataatctgagc
tcataaagccttgggcaaggaaggactgattcacccacgtgcactaaatg
accagtgtgacctatttccgggtaggggatggttcaagggcctagccctg
gccctcctgttgatcctcttcaacacactggtctctttctcatactgagg
ccctggccacccaaagatgg
gaattcacacgcgtgagccgtggaggctgctaagccgtggcttggtggga
aacccgagccatggaaactgaagacagatgggaactgcctagcagactcc
ttgtcattgtgttgattcctgttttctttctttcttcctttctttctttc
ttcctttctttctttctttctttctttctttctttctttctttctttttt
tttttctgatggcaagccccaaattaaaatcttgctatttcacagaaaaa
aaaaaccaaactacatatgaccactgacctgtaaataataaattaatcca
ttggatgtagagtacagattaattttatggtgtggaaacctgaagtgcct
aaatattgtataacgtttttattgtaaagtgctctgctccataagcattc
tcctaggctgacctaatcttacatgtaggaactcgaatgattttgagcag
accgttattatgtttaaagcaaagaatgtgtttgattatgttgcttaatt
tgtattgtttcttgtttattatttttactaaaacgcaagcatttccatag
taaatatttgctggaatctgtgcaagtctgtgacttctttgttttaaata
aacaaagcaaacgtgggttactttgagcaaagaaaacatctgtgaaggaa
agaatgtgaatcctaatacacgggattctggtactgagcaataatgaata
aatgttgcttaattttaggttgtgtatttaaaacactagtttaaacagct
atttacactgtttagggcagttttgatggctacttttctacggttgattt
gggttttggctcattgttctaatgtttgggttgttctgtgttatagagaa
gcccagaggagatagttcaatctacccttgactttgtgctgagggctgga
aagacggcttagcatgtgagagcatcagctgctcttgcagattctggatt
tagatcccagtacataatatacaagatggctcttagctgcacatagcacc
aggtctaagggttatcttgcgcccttctacatcacaggtggatatacctt
acatgcatgcaggcgaaaatcctccatacatatatttatttttaattatt
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_171034461_171035987
seq2: B6Ng01-120G22.b_50_1169

seq1  GAATTCAGCTCCTCAGGTATCTATGATCAGCATTTACCCACTGAGTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCCTCAGGTATCTATGATCAGCATTTACCCACTGAGTCATT  50

seq1  TTTACATCCTTGTATTCAATTTTAAACATATGTCCAAACATTGGGTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCCTTGTATTCAATTTTAAACATATGTCCAAACATTGGGTAAAA  100

seq1  TATCTGTGAATCTTATCATGTTTTTAATCATCTTAATTGATATTCAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGAATCTTATCATGTTTTTAATCATCTTAATTGATATTCAACTT  150

seq1  TAGTAGATGATGTTCTTGCTTTAGAAAAAAAATTAGAGACCCACTACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGATGATGTTCTTGCTTTAGAAAAAAAATTAGAGACCCACTACTGG  200

seq1  TATCCCCACCAACAAGCCCTGATGGGATACTCTCTTAATCATGGGATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCACCAACAAGCCCTGATGGGATACTCTCTTAATCATGGGATCTT  250

seq1  TCCATATCTTGGTCTGTACAACTCTGTAATGGGGTCATTAGCATGAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATCTTGGTCTGTACAACTCTGTAATGGGGTCATTAGCATGAATAA  300

seq1  ATGATGAGACGGAGAACACAGGAACATAGATAAAATCTACACTACCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGACGGAGAACACAGGAACATAGATAAAATCTACACTACCAAGA  350

seq1  AAAGTTTCAGGGGACTTCTACTTTTTCCAGAGCATGATCAGGCAGCCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCAGGGGACTTCTACTTTTTCCAGAGCATGATCAGGCAGCCTAG  400

seq1  ATTTAGCTGCATGTCAATCTCCACGTCCACCCTTTAAGTGTTAATAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCTGCATGTCAATCTCCACGTCCACCCTTTAAGTGTTAATAAGGT  450

seq1  TTCAACACAGAACATTTGAATCTCAGCAAGCCCGTGGCTCATGCTCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACAGAACATTTGAATCTCAGCAAGCCCGTGGCTCATGCTCCTGA  500

seq1  AATGCTCAATAATCACCATGCGATTTTATTCCTCCCTACTGGGTCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCAATAATCACCATGCGATTTTATTCCTCCCTACTGGGTCTTTTT  550

seq1  AAAACCAGAAAGGAAAACATCCTGGGCTAAAGTCTTTTTTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGAAAGGAAAACATCCTGGGCTAAAGTCTTTTTTTTTTTTTTTT  600

seq1  CATCTTAGCTTAAGCTTAATGGTGCCAGAGTCACCTGGTTTTTGCATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAGCTTAAGCTTAATGGTGCCAGAGTCACCTGGTTTTTGCATGAG  650

seq1  ATTGTTGACACAGAGATAATAAGTTTCCACCTGGTGACTCAATTATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGACACAGAGATAATAAGTTTCCACCTGGTGACTCAATTATTTTT  700

seq1  AATGATTTACACAAAATAATTACTGCTGACAAATGTCCAGCTCCTCAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTACACAAAATAATTACTGCTGACAAATGTCCAGCTCCTCAGAA  750

seq1  GAAGGAAACAGCTATGCCCGTGTCCAGTTTTGTGTCTTCCATCCATCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAACAGCTATGCCCGTGTCCAGTTTTGTGTCTTCCATCCATCACA  800

seq1  GCTTTACAAATGGATGGACGGACATTAGTGACTGAGGACTGTGAAGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACAAATGGATGGACGGACATTAGTGACTGAGGACTGTGAAGACTG  850

seq1  AGTTGCAGACACCAGGCAGATAAAGCCTCTGATGCGCATGCACAGAAGTG  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGTTGCAGACACCAGGCAAATAAAGCCTCTGATGCGCATGCACAGAAGTG  900

seq1  GGCCTTGAAGAGTGGTGGTCAAGAT-GGTAGAAAGGCAAATAATCTGAGC  949
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  GGCCTTGAAGAGTGGTGGTCAAGATGGGTAAAAAGGCAAATAATCTGAGC  950

seq1  TCATAAAGCCTTGGGCAAGGAAGGACTGATTCACCCACGTGCACTAAATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGCCTTGGGCAAGGAAGGACTGATTCACCCACGTGCACTAAATG  1000

seq1  ACCAGTGTGACTCATTTCC-GGTAGGGGATGGTTCCAAGGGCTTAGCCTT  1048
      |||||||||||  |||||| |||||||||||||| ||||||| ||||| |
seq2  ACCAGTGTGACCTATTTCCGGGTAGGGGATGGTT-CAAGGGCCTAGCCCT  1049

seq1  GCCTCT-CTGTTGAT-CTCTTCTACACACTGGT-TCTTTCCACATACTGA  1095
      | | || |||||||| |||||| |||||||||| ||||| | ||||||||
seq2  GGCCCTCCTGTTGATCCTCTTCAACACACTGGTCTCTTT-CTCATACTGA  1098

seq1  TGCCCTGGCCA-CCACAGAT-GTATATTATACTGTAGTTCAAAATGTAGA  1143
       |||||||||| ||| |||| |                            
seq2  GGCCCTGGCCACCCAAAGATGG----------------------------  1120

seq1  AAAAGAGGTCTTTTGTTGGGGAGTGGTACTTTCTTTGAAGTCCTAAGACT  1193
                                                        
seq2  --------------------------------------------------  1120

seq1  ATCTCATACTCCTGACCTACACACTATATTCACAAAGGACTCTATCTGGG  1243
                                                        
seq2  --------------------------------------------------  1120

seq1  CCTAACAGGATGGCTCAGCAGGTAAAGATACATGCAGCTAAGCTGGATAA  1293
                                                        
seq2  --------------------------------------------------  1120

seq1  TCAGAATTTTATATCCAGCAGCCACATGGTAGAAGGAAATAAAGGATTCT  1343
                                                        
seq2  --------------------------------------------------  1120

seq1  CCTGGGTTGTCTTTGACCTCCACGCATGCGTGCCTCTCTTCCACAGTACA  1393
                                                        
seq2  --------------------------------------------------  1120

seq1  TAAATTAGTAAATAAATATTTTAAAAACCAACAAAGCTCTTAATCTTCGT  1443
                                                        
seq2  --------------------------------------------------  1120

seq1  AAGAGATGTACTACCTGAGAAATGTGAAGCTCTTTCTGTACTCATTGCTG  1493
                                                        
seq2  --------------------------------------------------  1120

seq1  TGCAGGGTGGTCTCCAGTCGGTCAGCAAAGATGG  1527
                                        
seq2  ----------------------------------  1120

seq1: chr2_171130503_171131598
seq2: B6Ng01-120G22.g_65_1166 (reverse)

seq1  ATAATAATTAAAAATAAATTAATATGTAT-GAGTATTTT-GCTTGCATGC  48
      |||||||||||||||||||  |||||||| ||| ||||| || |||||||
seq2  ATAATAATTAAAAATAAAT--ATATGTATGGAGGATTTTCGCCTGCATGC  48

seq1  ATGTAA-GTGTAT-CACCTGGTGATTGTAG-AGGGCGC-AGATA--CCCT  92
      |||||| || ||| ||||| |||| ||||| ||||||| |||||  || |
seq2  ATGTAAGGTATATCCACCT-GTGA-TGTAGAAGGGCGCAAGATAACCCTT  96

seq1  AGACCTGGTGCTATGTGCAGCTATGAGCCATCTTGTATA-TATGTACTGG  141
      ||||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  AGACCTGGTGCTATGTGCAGCTAAGAGCCATCTTGTATATTATGTACTGG  146

seq1  GATCTAAATCCAGATCTTGCAAGAGCAGCTGATGCTCTCACATGCTAAGC  191
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  GATCTAAATCCAGAATCTGCAAGAGCAGCTGATGCTCTCACATGCTAAGC  196

seq1  CGTCTTTCCAGCCCTCAGCACAAAGTCAAGGGTAGATTGAACTATCTCCT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTTCCAGCCCTCAGCACAAAGTCAAGGGTAGATTGAACTATCTCCT  246

seq1  CTTGGCTTCTCTATAACACAGAACAACCCAAACATTAGAACAATGAGCCA  291
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTCTCTATAACACAGAACAACCCAAACATTAGAACAATGAGCCA  296

seq1  AAA-CCAAATCAACCGTAGAAAAGTAGCCATCAAAACTGCCCTAAACAGT  340
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAATCAACCGTAGAAAAGTAGCCATCAAAACTGCCCTAAACAGT  346

seq1  GTAAATAGCTGTTTAAACTAGTGTTTTAAATACACAACCTAAAATTAAGC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAGCTGTTTAAACTAGTGTTTTAAATACACAACCTAAAATTAAGC  396

seq1  AACATTTATTCATTATTGCTCAGTACCAGAATCCCGTGTATTAGGATTCA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTATTCATTATTGCTCAGTACCAGAATCCCGTGTATTAGGATTCA  446

seq1  CATTCTTTCCTTCACAGATGTTTTCTTTGCTCAAAGTAACCCACGTTTGC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTCCTTCACAGATGTTTTCTTTGCTCAAAGTAACCCACGTTTGC  496

seq1  TTTGTTTATTTAAAACAAAGAAGTCACAGACTTGCACAGATTCCAGCAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATTTAAAACAAAGAAGTCACAGACTTGCACAGATTCCAGCAAA  546

seq1  TATTTACTATGGAAATGCTTGCGTTTTAGTAAAAATAATAAACAAGAAAC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTATGGAAATGCTTGCGTTTTAGTAAAAATAATAAACAAGAAAC  596

seq1  AATACAAATTAAGCAACATAATCAAACACATTCTTTGCTTTAAACATAAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAATTAAGCAACATAATCAAACACATTCTTTGCTTTAAACATAAT  646

seq1  AACGGTCTGCTCAAAATCATTCGAGTTCCTACATGTAAGATTAGGTCAGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTCTGCTCAAAATCATTCGAGTTCCTACATGTAAGATTAGGTCAGC  696

seq1  CTAGGAGAATGCTTATGGAGCAGAGCACTTTACAATAAAAACGTTATACA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGAATGCTTATGGAGCAGAGCACTTTACAATAAAAACGTTATACA  746

seq1  ATATTTAGGCACTTCAGGTTTCCACACCATAAAATTAATCTGTACTCTAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGGCACTTCAGGTTTCCACACCATAAAATTAATCTGTACTCTAC  796

seq1  ATCCAATGGATTAATTTATTATTTACAGGTCAGTGGTCATATGTAGTTTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATGGATTAATTTATTATTTACAGGTCAGTGGTCATATGTAGTTTG  846

seq1  GTTTTTTTTTTCTGTGAAATAGCAAGATTTTAATTTGGGGCTTGCCATCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTCTGTGAAATAGCAAGATTTTAATTTGGGGCTTGCCATCA  896

seq1  GAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  946

seq1  AAGGAAGAAAGAAAGAAAGGAAGAAAGAAAGAAAACAGGAATCAACACAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAAAGAAAGAAAGGAAGAAAGAAAGAAAACAGGAATCAACACAA  996

seq1  TGACAAGGAGTCTGCTAGGCAGTTCCCATCTGTCTTCAGTTTCCATGGCT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGAGTCTGCTAGGCAGTTCCCATCTGTCTTCAGTTTCCATGGCT  1046

seq1  CGGGTTTCCCACCAAGCCACGGCTTAGCAGCCTCCACGGCTCACGCGTGT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTTCCCACCAAGCCACGGCTTAGCAGCCTCCACGGCTCACGCGTGT  1096

seq1  GAATTC  1096
      ||||||
seq2  GAATTC  1102