BAC Information

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BAC

Clone NameB6Ng01-120I10
Chromosome2 (Build37)
Map Location 148,226,147 - 148,386,313
singlet/doubletdoublet
Overlap geneThbd, Cd93
Upstream geneLOC640914, A530006G24Rik, LOC100043820, Foxa2, LOC383752, Sstr4
Downstream geneNxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120I10.bB6Ng01-120I10.g
ACCDH924447DH924448
length1,1971,060
definitionDH924447|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I10, 5' end.DH924448|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,385,125 - 148,386,313)(148,226,147 - 148,227,211)
sequence
gcacagtattatctaaacaaatctccttctttaataaatcacacactctc
aaatagtctgctatagaaacaacagaccaagacagtgccttttccaacag
tggaaaagtatctcctctctgttgatataaatgaggctcggacacaggtt
cctggaggtgcagtggggaggggggcaacaaccaagcctacaccagtgta
gaatcctgatgtatggagaacacttgcctcatatggggtctgtggcttag
gttactggattcatacaacccaaatgttctgaccaaaggaaggccgcttc
agccacaagtacacctgactctttagacaactcacatggctacagtgcaa
ggcagaggcccttcaccatttattcataataggttttagtggtctctgcc
acagggtggttgtgccagagtccaaatcccctatcctcaagttggtccgt
agtggcaatattttgaacactggaagtttgacaggccatataccctgttg
tattcatgatagctgagcaccagtcctccctagcctggtaccatcacccc
atgtttattgagctgcagggggaataagacatagctgactggattgcatg
tttggtcctttttttcactgggcctagtgttgaggcattaattccaatgt
gctttatattttaaaaatgattctgctcaatttttcagtgaacctaaact
tgcttttgcaaaagaaagtctatagaaattaaagtaagcagatttgacat
agattatgaattaaaaagaaatgaacagatcattgttgtgtttccctgca
gtccagttgggagctacatggctgcaggtttcttgcccacaaatacaaac
aaagtaaaatattaatctgttcatcagtagccatgcaatcagggcttact
ttcgaccttggggctgagtcctgggactgcagaaatagtgtatattcaca
agaacaaacattcttctcatgggttttctgagttaatggcagagtgactg
gaatcacatggctcctgtcttttggactctagcactggtcaaagttataa
aggttcttggctgaaagagaagtggaaaaggtggcttctgccattcagaa
agcttagcaaggaacctcagaccctcccccctctatccttatgaccgtgg
agaggtacctaggaggggtatagagatacacaggcctggactcatca
gaattccctatggacttggtaaccttttgaataccgaacataaactattg
gaggagtgtggtttccttccaggtcgggaacccatgctttctttctggaa
gaacagtaaggatattcctctagactctgtctttgctgcagtctgccact
acctgctaactgctggcatgaagacaattgcactgggtttgtgtcactct
gtttaggtttatttaagtggcttcctgtgctttggaaggtcaggaaagct
gtatctccctctagcccatcttagccaacttcagtttctcctggtgtcag
tgctgaatttctgcagaaccacctttgggggggcaggaaggggaaatact
gatggcagttaaacatctacaaagaatcttggatgtttgtggtgtatacc
tcagtaggttacccttccagctcttaggctagagagtgaaggcaaaatta
gcatgtgaaagaaactgtctgattaaggggaagtaactcctccccaccaa
agctgaggttgtaacaaacatactctgtgtaattaaaaaaaaagaaaaaa
agaaaagaaataaaaagtcttctcttaatgttcctatctatgagacacaa
tgtgggcatcgctgacctactgacctttctcccatccagcccacttcctc
ccctggaagtgctttcttccttaataaactctttcagcttataccatgtc
tgtgtgtccccgccaagtttcttgttctgggacacaagaacttgaaagcc
ccaaagggtgcttgctccttgggttcctgtatcttctaataaaagttggg
agggatgggggctgggtgagatggcttcagttgtttagagcaccgactgc
gcttccaatgtcctgagttcaattccagcaacacatggtggctcacaacc
atctgttattagatctgacaccctcttctgggtagtctgaagacagctac
agtgtgcttacttatataaataataaatattttaaaaaaaggggaaggca
ggctactgttatgaaatgagcgctgggatctgtggtaagttgatgtcttg
tgcttaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_148385125_148386313
seq2: B6Ng01-120I10.b_54_1250 (reverse)

seq1  TGATAGAGTCCAGGCTTGGAT---TCTATAACCACTCTAGTAAC--ATCC  45
      |||| |||||||||| ||  |   |||||| ||   ||||  ||   |||
seq2  TGAT-GAGTCCAGGCCTGTGTATCTCTATACCCCTCCTAGGTACCTCTCC  49

seq1  ACGGGCATAAGAATAGAAGAGAGA-GGTCTGAGGTTCCTCGCAAAGCTTC  94
      |||| |||||| ||||| | | || |||||||||||||| || |||||| 
seq2  ACGGTCATAAGGATAGAGGGGGGAGGGTCTGAGGTTCCTTGCTAAGCTTT  99

seq1  TGGAATGCACGAAG-CACCTTTTCCACTTCTTCTTTTCAGCCAAGAACTT  143
        |||||   |||| ||||||||||||||||   |||||||||||||| |
seq2  CTGAATGGCAGAAGCCACCTTTTCCACTTCT--CTTTCAGCCAAGAACCT  147

seq1  TAATAACTTTGA-CAGTGC-AGAGTCCAAAGGACAGGAGCCATGTGATTC  191
      | |||||||||| |||||| |||||||||| |||||||||||||||||||
seq2  TTATAACTTTGACCAGTGCTAGAGTCCAAAAGACAGGAGCCATGTGATTC  197

seq1  CAGGTCACTCTGCAATTAACTCAG-AAACCCATGGGAAG-ATGTTTGTTC  239
      || |||||||||| |||||||||| ||||||||| |||| ||||||||||
seq2  CA-GTCACTCTGCCATTAACTCAGAAAACCCATGAGAAGAATGTTTGTTC  246

seq1  TTGTGAATATACACTATTTCTGCAGTCCCAGGACTCAGCCCCAAGGTCG-  288
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGTGAATATACACTATTTCTGCAGTCCCAGGACTCAGCCCCAAGGTCGA  296

seq1  AAGTAAGCCCCTGATTGCATGGCTACTGATGAACAGATTAATATTTTACT  338
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAG-CCCTGATTGCATGGCTACTGATGAACAGATTAATATTTTACT  345

seq1  TTGTTTGTATTTGTTGGCAAGAAACCTGCAGCCATGTAGCTCCCAACTGG  388
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTATTTGTGGGCAAGAAACCTGCAGCCATGTAGCTCCCAACTGG  395

seq1  ACTGCAGGGAAACACAACAATGATCTGTTCATTTCTTTTTAATTCATAAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGGAAACACAACAATGATCTGTTCATTTCTTTTTAATTCATAAT  445

seq1  CTATGTCAAATCTGCTTACTTTAATTTCTATAGACTTTCTTTTGC-AAAG  487
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTATGTCAAATCTGCTTACTTTAATTTCTATAGACTTTCTTTTGCAAAAG  495

seq1  CAAGTTTAGGTTCACTGAAAAATTGAGCAGAATCATTTTTAAAATATAAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTAGGTTCACTGAAAAATTGAGCAGAATCATTTTTAAAATATAAA  545

seq1  GCACATTGGAATTAATGCCTCAACACTAGGCCCAGTGAAAAAAAGGACCA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTGGAATTAATGCCTCAACACTAGGCCCAGTGAAAAAAAGGACCA  595

seq1  AACATGCAATCCAGTCAGCTATGTCTTATTCCCCCTGCAGCTCAATAAAC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCAATCCAGTCAGCTATGTCTTATTCCCCCTGCAGCTCAATAAAC  645

seq1  ATGGGGTGATGGTACCAGGCTAGGGAGGACTGGTGCTCAGCTATCATGAA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTGATGGTACCAGGCTAGGGAGGACTGGTGCTCAGCTATCATGAA  695

seq1  TACAACAGGGTATATGGCCTGTCAAACTTCCAGTGTTCAAAATATTGCCA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGGGTATATGGCCTGTCAAACTTCCAGTGTTCAAAATATTGCCA  745

seq1  CTACGGACCAACTTGAGGATAGGGGATTTGGACTCTGGCACAACCACCCT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGACCAACTTGAGGATAGGGGATTTGGACTCTGGCACAACCACCCT  795

seq1  GTGGCAGAGACCACTAAAACCTATTATGAATAAATGGTGAAGGGCCTCTG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGAGACCACTAAAACCTATTATGAATAAATGGTGAAGGGCCTCTG  845

seq1  CCTTGCACTGTAGCCATGTGAGTTGTCTAAAGAGTCAGGTGTACTTGTGG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCACTGTAGCCATGTGAGTTGTCTAAAGAGTCAGGTGTACTTGTGG  895

seq1  CTGAAGCGGCCTTCCTTTGGTCAGAACATTTGGGTTGTATGAATCCAGTA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCGGCCTTCCTTTGGTCAGAACATTTGGGTTGTATGAATCCAGTA  945

seq1  ACCTAAGCCACAGACCCCATATGAGGCAAGTGTTCTCCATACATCAGGAT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGCCACAGACCCCATATGAGGCAAGTGTTCTCCATACATCAGGAT  995

seq1  TCTACACTGGTGTAGGCTTGGTTGTTGCCCCCCTCCCCACTGCACCTCCA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACTGGTGTAGGCTTGGTTGTTGCCCCCCTCCCCACTGCACCTCCA  1045

seq1  GGAACCTGTGTCCGAGCCTCATTTATATCAACAGAGAGGAGATACTTTTC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTGTGTCCGAGCCTCATTTATATCAACAGAGAGGAGATACTTTTC  1095

seq1  CACTGTTGGAAAAGGCACTGTCTTGGTCTGTTGTTTCTATAGCAGACTAT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGGAAAAGGCACTGTCTTGGTCTGTTGTTTCTATAGCAGACTAT  1145

seq1  TTGAGAGTGTGTGATTTATTAAAGAAGGAGATTTGTTTAGATAATACTGT  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGTGTGTGATTTATTAAAGAAGGAGATTTGTTTAGATAATACTGT  1195

seq1  GC  1189
      ||
seq2  GC  1197

seq1: chr2_148226147_148227211
seq2: B6Ng01-120I10.g_71_1130

seq1  GAATTCCCTATGGACTTGGTAACCTTTTGAATACCGAACATAAACTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTATGGACTTGGTAACCTTTTGAATACCGAACATAAACTATTG  50

seq1  GAGGAGTGTGGTTTCCTTCCAGGTCGGGAACCCATGCTTTCTTTCTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTGTGGTTTCCTTCCAGGTCGGGAACCCATGCTTTCTTTCTGGAA  100

seq1  GAACAGTAAGGATATTCCTCTAGACTCTGTCTTTGCTGCAGTCTGCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTAAGGATATTCCTCTAGACTCTGTCTTTGCTGCAGTCTGCCACT  150

seq1  ACCTGCTAACTGCTGGCATGAAGACAATTGCACTGGGTTTGTGTCACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTAACTGCTGGCATGAAGACAATTGCACTGGGTTTGTGTCACTCT  200

seq1  GTTTAGGTTTATTTAAGTGGCTTCCTGTGCTTTGGAAGGTCAGGAAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGTTTATTTAAGTGGCTTCCTGTGCTTTGGAAGGTCAGGAAAGCT  250

seq1  GTATCTCCCTCTAGCCCATCTTAGCCAACTTCAGTTTCTCCTGGTGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCCCTCTAGCCCATCTTAGCCAACTTCAGTTTCTCCTGGTGTCAG  300

seq1  TGCTGAATTTCTGCAGAACCACCTTTGGGGGGGCAGGAAGGGGAAATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATTTCTGCAGAACCACCTTTGGGGGGGCAGGAAGGGGAAATACT  350

seq1  GATGGCAGTTAAACATCTACAAAGAATCTTGGATGTTTGTGGTGTATACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAGTTAAACATCTACAAAGAATCTTGGATGTTTGTGGTGTATACC  400

seq1  TCAGTAGGTTACCCTTCCAGCTCTTAGGCTAGAGAGTGAAGGCAAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGGTTACCCTTCCAGCTCTTAGGCTAGAGAGTGAAGGCAAAATTA  450

seq1  GCATGTGAAAGAAACTGTCTGATTAAGGGGAAGTAACTCCTCCCCACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGAAAGAAACTGTCTGATTAAGGGGAAGTAACTCCTCCCCACCAA  500

seq1  AGCTGAGGTTGTAACAAACATACTCTGTGTAATTAAAAAAAAAGAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGTTGTAACAAACATACTCTGTGTAATTAAAAAAAAAGAAAAAA  550

seq1  AGAAAAGAAATAAAAAGTCTTCTCTTAATGTTCCTATCTATGAGACACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAATAAAAAGTCTTCTCTTAATGTTCCTATCTATGAGACACAA  600

seq1  TGTGGGCATCGCTGACCTACTGACCTTTCTCCCATCCAGCCCACTTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCATCGCTGACCTACTGACCTTTCTCCCATCCAGCCCACTTCCTC  650

seq1  CCCTGGAAGTGCTTTCTTCCTTAATAAACTCTTTCAGCTTATACCATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAAGTGCTTTCTTCCTTAATAAACTCTTTCAGCTTATACCATGTC  700

seq1  TGTGTGTCCCCGCCAAGTTTCTTGTTCTGGGACACAAGAACTTGAAAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCCCCGCCAAGTTTCTTGTTCTGGGACACAAGAACTTGAAAGCC  750

seq1  CCAAAGGGTGCTTGCTCCTTGGGTTCCTGTATCTTCTAATAAAAG-TGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCAAAGGGTGCTTGCTCCTTGGGTTCCTGTATCTTCTAATAAAAGTTGGG  800

seq1  AGGGAT-GGGGCT-GGTGAGATGGC-TCAGTGGTTAAGAGCACCGACTGC  846
      |||||| |||||| ||||||||||| ||||| ||| ||||||||||||||
seq2  AGGGATGGGGGCTGGGTGAGATGGCTTCAGTTGTTTAGAGCACCGACTGC  850

seq1  GCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACA  896
      |||||| || ||||||||||| ||| ||||||| ||||||||||||||||
seq2  GCTTCC-AATGTCCTGAGTTC-AATTCCAGCAA-CACATGGTGGCTCACA  897

seq1  ACCATCTGTAATAAGATCTGACACCCTCTTCTGGTATGTCTGAAGACAGC  946
      ||||||||| || |||||||||||||||||||||   |||||||||||||
seq2  ACCATCTGTTATTAGATCTGACACCCTCTTCTGGGTAGTCTGAAGACAGC  947

seq1  TACAGTGTGCTTACATATAATAAATAAATAAATATTTAAAAAAAAGTGGG  996
      |||||||||||||| ||| |||||| ||||||||||| |||||||| |||
seq2  TACAGTGTGCTTACTTAT-ATAAAT-AATAAATATTTTAAAAAAAG-GGG  994

seq1  AGGGCAGGGGCTACTGTTATGAGAGTGAGCGCCTGGATCTGTGG-AAGGT  1045
      | ||||  |||||||||||||| | |||||||  |||||||||| ||| |
seq2  AAGGCA--GGCTACTGTTATGA-AATGAGCGCTGGGATCTGTGGTAAGTT  1041

seq1  GATGTCTTGTGCTCAAGGTA  1065
      |||||||||||||  |||||
seq2  GATGTCTTGTGCT-TAGGTA  1060