BAC Information

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BAC

Clone NameB6Ng01-120K20
Chromosome2 (Build37)
Map Location 57,092,262 - 57,211,678
singlet/doubletdoublet
Overlap geneGpd2
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910
Downstream geneLOC271788, Galnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120K20.bB6Ng01-120K20.g
ACCDH924561DH924562
length826949
definitionDH924561|Mus musculus domesticus DNA, BAC clone: B6Ng01-120K20, 5' end.DH924562|Mus musculus domesticus DNA, BAC clone: B6Ng01-120K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,092,262 - 57,093,094)(57,210,722 - 57,211,678)
sequence
gaattcttacattatcctgtccatagtcaggatgtaagtttttttttttt
ttttaagatttattttatgtatatgagtacactgtacttgtacagatgct
tgtgagccatcatgtggttgttaggaattgaacttgggacctctgcttgc
tctggccccacttgctccggcccaaagatttatttgttgttatatctaag
tacactgtagctgtcttcaggcacaccggaagagggtgtcagatctcatt
actgatggttgtgagccatcctgtgcttgctgggatttgaactcaggact
ttcagaagggccgccagtgctcttaacccctgagccatctctccaggcca
ggatgtacgtttttactggggttgggtgtgtcttacacactttcagatct
ctagcaccaggagtggtggcttggtttgcaatagtcttccacaaatgctt
tctccggcagtgactaacctgaaacaatgtatctgagtctaagaaacaga
aagttttggccttagagaacatgttcaaatttactaagtctcatagacaa
aatatgggtaatggtatatgtatatgtacacacacacacacacacacaca
cacacacacacacacacacatatacgtatacacacacacacatatatata
ccaggtctacaatcactagtaatatgtcctagaggcaagaaactctaaat
gttagtgtccttcctcttatttttcttttgcattggaaaagcaaattttg
ggaaaaagcatacagctagacaggtgatttaagtttggggtttttttttt
tttgttttgtttgtttgttttgtttt
gaattccatctttaggaatctatgaacacttgaaggttaggctagtgccc
aacactcatctgcactatacgtgacaagacgcccaataatactcatttac
tacatacacatgtgaatatgccaaggagctctctgtccatgaaccataga
aagaggtttagagctgatggtaccttgaccttggacttcatattagaaac
tgaagggattaatttgagaattaaatgttggctatttgaagcagtctgac
gtactattagcctctgagtcacaatgccctcttagtcttatgacactgcc
caacctaagccactcctttctatgtcttctatatccttccttatcgttcc
aggctctaaactttgaagtgttcctagactagttccagggccactttcct
cgcctaccagtattcagtgccctccccgtgtccccacgactaatataatg
tctcaaaagccaactgtaaaatgtacattctgctaaggcctctggacaca
tccagtgacagtctggattatgttctcatataatttccaaagttgttaag
atggaaacactgtcttacttggcgagaagccagtacagtgcattagacac
accaggagtctacaccaaggtaacaataatgaatgcaataagaaagggtg
acactccaccctgatttggatgataacagtgacatttggagaggctttgg
ttggagagtgagtgaacatacaatatgatgttaaagtggagatctaagca
ctgaggggcagtgagtaagctgttatgacatggaaagactctagggacag
tacttgatgaagctatgaagtgactgaaaagaaacattctttctgatgta
aaacagtgtcaaggcagcatggtgtgtagtcttggctgtcctgaaactca
ttatgcagacaaggctgccttgactcagaatccactgcctcttgcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_57092262_57093094
seq2: B6Ng01-120K20.b_47_872

seq1  GAATTCTTACATTATCCTGTCCATAGTCAGGATGTAAGTTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACATTATCCTGTCCATAGTCAGGATGTAAGTTTTTTTTTTTT  50

seq1  TTTTAAGATTTATTTTATGTATATGAGTACACTGTACTTGTACAGATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGATTTATTTTATGTATATGAGTACACTGTACTTGTACAGATGCT  100

seq1  TGTGAGCCATCATGTGGTTGTTAGGAATTGAACTTGGGACCTCTGCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCATCATGTGGTTGTTAGGAATTGAACTTGGGACCTCTGCTTGC  150

seq1  TCTGGCCCCACTTGCTCCGGCCCAAAGATTTATTTGTTGTTATATCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCCCACTTGCTCCGGCCCAAAGATTTATTTGTTGTTATATCTAAG  200

seq1  TACACTGTAGCTGTCTTCAGGCACACCGGAAGAGGGTGTCAGATCTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGTAGCTGTCTTCAGGCACACCGGAAGAGGGTGTCAGATCTCATT  250

seq1  ACTGATGGTTGTGAGCCATCCTGTGCTTGCTGGGATTTGAACTCAGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGGTTGTGAGCCATCCTGTGCTTGCTGGGATTTGAACTCAGGACT  300

seq1  TTCAGAAGGGCCGCCAGTGCTCTTAACCCCTGAGCCATCTCTCCAGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGGGCCGCCAGTGCTCTTAACCCCTGAGCCATCTCTCCAGGCCA  350

seq1  GGATGTACGTTTTTACTGGGGTTGGGTGTGTCTTACACACTTTCAGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTACGTTTTTACTGGGGTTGGGTGTGTCTTACACACTTTCAGATCT  400

seq1  CTAGCACCAGGAGTGGTGGCTTGGTTTGCAATAGTCTTCCACAAATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACCAGGAGTGGTGGCTTGGTTTGCAATAGTCTTCCACAAATGCTT  450

seq1  TCTCCGGCAGTGACTAACCTGAAACAATGTATCTGAGTCTAAGAAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGGCAGTGACTAACCTGAAACAATGTATCTGAGTCTAAGAAACAGA  500

seq1  AAGTTTTGGCCTTAGAGAACATGTTCAAATTTACTAAGTCTCATAGACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGGCCTTAGAGAACATGTTCAAATTTACTAAGTCTCATAGACAA  550

seq1  AATATGGGTAATGGTATATGTATATGTACACACACACACACACACACACA  600
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  AATATGGGTAATGGTATATGTATATGT--ACACACACACACACACACACA  598

seq1  CACACACACACACACACACACATATACGTATACACACACACACATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACATATACGTATACACACACACACATATATA  648

seq1  TACCAGGTCTACAATCACTAGTAATATGTCCTAGAGGCAAGAAACTCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGTCTACAATCACTAGTAATATGTCCTAGAGGCAAGAAACTCTAA  698

seq1  ATGTTAGTGTCCTTCCTCTTATTTTTCTTTTGCATTGGAAAAGCAAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGTGTCCTTCCTCTTATTTTTCTTTTGCATTGGAAAAGCAAATTT  748

seq1  TGGGAAAAAGCATACAGCTAGACAGGTGATTTAGGTTTGGGGTTTTTTTT  800
      ||||||||||||||||||||||||||||||||| ||||||||  ||||||
seq2  TGGGAAAAAGCATACAGCTAGACAGGTGATTTAAGTTTGGGG--TTTTTT  796

seq1  TTTTTTTGTTTTGTTTTGTTTTGTTTTTGTTTT  833
      ||||||||||||| |||||||   |||||||||
seq2  TTTTTTTGTTTTG-TTTGTTT--GTTTTGTTTT  826

seq1: chr2_57210722_57211678
seq2: B6Ng01-120K20.g_68_1016 (reverse)

seq1  GGAGGCAAGAGGCAGGTGGATCTCTGAGTTCAAGGCCAGCCTGGTCTGCA  50
      |||||||||||||| |||||| |||||| |||||| |||||| |||||||
seq2  GGAGGCAAGAGGCA-GTGGAT-TCTGAG-TCAAGG-CAGCCTTGTCTGCA  46

seq1  TAATGAGTTTCAGGACAGCCAAGACTACACACCATGCCTGCCTTGACCAC  100
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  TAATGAGTTTCAGGACAGCCAAGACTACACACCATG-CTGCCTTGA-CAC  94

seq1  TGTTTTACATTCAGAAAGAATGTTTCTTTTCAGTCACTTCATAGCTTCAT  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACA-TCAGAAAGAATGTTTCTTTTCAGTCACTTCATAGCTTCAT  143

seq1  CAAGTACTGTCCCTAGAGTCTTTTCCATGTCATAACAGCTTACTCACTGC  200
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAAGTACTGTCCCTAGAGTC-TTTCCATGTCATAACAGCTTACTCACTGC  192

seq1  CCCTCAGTGCTTAGATCTCCACTTTAACATCATATTGTATGTTCACTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGTGCTTAGATCTCCACTTTAACATCATATTGTATGTTCACTCAC  242

seq1  TCTCCAACCAAAGCCTCTCCAAATGTCACTGTTATCATCCAAATCAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAACCAAAGCCTCTCCAAATGTCACTGTTATCATCCAAATCAGGGT  292

seq1  GGAGTGTCACCCTTTCTTATTGCATTCATTATTGTTACCTTGGTGTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTCACCCTTTCTTATTGCATTCATTATTGTTACCTTGGTGTAGAC  342

seq1  TCCTGGTGTGTCTAATGCACTGTACTGGCTTCTCGCCAAGTAAGACAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGTGTCTAATGCACTGTACTGGCTTCTCGCCAAGTAAGACAGTG  392

seq1  TTTCCATCTTAACAACTTTGGAAATTATATGAGAACATAATCCAGACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCTTAACAACTTTGGAAATTATATGAGAACATAATCCAGACTGT  442

seq1  CACTGGATGTGTCCAGAGGCCTTAGCAGAATGTACATTTTACAGTTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGATGTGTCCAGAGGCCTTAGCAGAATGTACATTTTACAGTTGGCT  492

seq1  TTTGAGACATTATATTAGTCGTGGGGACACGGGGAGGGCACTGAATACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACATTATATTAGTCGTGGGGACACGGGGAGGGCACTGAATACTG  542

seq1  GTAGGCGAGGAAAGTGGCCCTGGAACTAGTCTAGGAACACTTCAAAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCGAGGAAAGTGGCCCTGGAACTAGTCTAGGAACACTTCAAAGTTT  592

seq1  AGAGCCTGGAACGATAAGGAAGGATATAGAAGACATAGAAAGGAGTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGGAACGATAAGGAAGGATATAGAAGACATAGAAAGGAGTGGCT  642

seq1  TAGGTTGGGCAGTGTCATAAGACTAAGAGGGCATTGTGACTCAGAGGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGGGCAGTGTCATAAGACTAAGAGGGCATTGTGACTCAGAGGCTA  692

seq1  ATAGTACGTCAGACTGCTTCAAATAGCCAACATTTAATTCTCAAATTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACGTCAGACTGCTTCAAATAGCCAACATTTAATTCTCAAATTAAT  742

seq1  CCCTTCAGTTTCTAATATGAAGTCCAAGGTCAAGGTACCATCAGCTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAGTTTCTAATATGAAGTCCAAGGTCAAGGTACCATCAGCTCTAA  792

seq1  ACCTCTTTCTATGGTTCATGGACAGAGAGCTCCTTGGCATATTCACATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTTCTATGGTTCATGGACAGAGAGCTCCTTGGCATATTCACATGT  842

seq1  GTATGTAGTAAATGAGTATTATTGGGCGTCTTGTCACGTATAGTGCAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAGTAAATGAGTATTATTGGGCGTCTTGTCACGTATAGTGCAGAT  892

seq1  GAGTGTTGGGCACTAGCCTAACCTTCAAGTGTTCATAGATTCCTAAAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTGGGCACTAGCCTAACCTTCAAGTGTTCATAGATTCCTAAAGAT  942

seq1  GGAATTC  957
      |||||||
seq2  GGAATTC  949