BAC Information

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BAC

Clone NameB6Ng01-120L04
Chromosome2 (Build37)
Map Location 136,626,571 - 136,627,808
singlet/doubletsinglet
Overlap genenone
Upstream genePlcb4, 6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911
Downstream geneMkks, 2210009G21Rik, Jag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120L04.bB6Ng01-120L04.g
ACCDH924575DH924576
length1,2021,215
definitionDH924575|Mus musculus domesticus DNA, BAC clone: B6Ng01-120L04, 5' end.DH924576|Mus musculus domesticus DNA, BAC clone: B6Ng01-120L04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacataataaaagcaatatacagcaaacca
gtagccagcatcaaagtaaatggtgagaagctggaagcaatcctactaaa
atcagggactagacaaggctgcccactttctctctacctattcaacatag
tacttgtagtcctagccagagcaaaatcaacaacaaaaggagatgaaggg
gatacaaattggaaaggaagaagtcaaaatatcactttttgcagatgata
tgatagtatatataagtgaccctaaaaattccaccagagaactcctaaac
ctgataaacagcttcaatgcagtagctggatataaaattaactcaaacaa
gtcagtggccgttctctacacaaaggataaacagtgtgagaaagaaatta
gggagacaacacccttcacaatagtcacaaataatagaaaatatcttgat
gtgactctatggaagtgaaaaatttgtctgataaaaatttcaagtctctg
aagaaagaaattgaagatctcagaagatggaaagatctcccatgctcatg
gattggcaggattaaaaaagtcaaaatggctatcctgccaaaagcaatct
actgattcaatgcaatccccatcaaaattcaattcttcactgagttagat
agggcaatatgcaaattcatctggagtaacaaaaaacctacgatagcaaa
aactattctcaacaataaaagaatctctgggggaatcaccatgcctgacc
tcaagctgtactacaaagcaacctacaaaacaaaggtaataaaaactgca
tggtagtggtacagcgacaaacaggaagatcaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttcatctttgacaagggag
ctaaaaccatccagtggaaaaagacagcattttcaacaaatggtgctggc
acaactggtggtatcatgtagagatgcgaatgatcattctatctcttgta
caagctcaagtcgagtggatcaagactccacataaacagagaactgaaat
tatagagaaaatgtgaagctcaagactggcacgagaaaagtctaccgaac
gcatgctcatgctgtggatgagaatcgacaatggactcataagtgcaagc
tcgtaggccaagaactgtcatagacaaagctccacgatggaaagaattta
tc
gaattcttagttccactcataatctgtagctccccatggaatctggcaca
gccacggccaagaccatagcttgttctgttcctgccctaaccttcctccc
tattaagatgtctgagaacactacctacagaaactccttgcaccagttcc
tactttagatcttagactctactgtagggaacctgacgtaagaccacttc
cggtcatacagcacttggaacagtcttagctaagagacaggacagcaagc
ttatgcttgaacacagaatctatgagttctaagagaaagttaattctatg
tatactagtaggggggaagagaattttagcaacaagactcctctctagtg
attagacaccaaaaagtctcatgtctctactaagcacagcatttatttgc
ccatatcccacatggtgttgcttttctttccaaaatgcatctcactattg
ctagcattcagtagaatttcaacacaggctgacagctcacatgtttctaa
gtttatgtgggctctagagtttacaaagcactgtacatactccaagcatg
tttcacagactggtagcatcttgtcctctgagaactagagatgctaaatt
ccatgtgtgctccagacttactaagtgagactgtcttggctggggtcagc
aacctgagttttaacaagatcttaggattattcttaggacatgagtattt
gaggaacattcatacaaatcatctcctacaactcattgaaaggtagattg
gctgacatgaaattacaggcaaaaaaaatgcaattgcaacaggaaccaaa
cattcatatacttatgaaaacacacacacacacacacacacacacacaca
cacacacagctctgacttgtttaaatgctataagagtacaaggttaaggc
ctcagcagagactctgaaacctagtccagcacttgctaacttgaataacc
atttatcttcctcagcctctgtttcttcatcaataaatgaaacacgccag
ggctagtcccactaactttatgatgatgatccaaaaatgaaaaatgaaat
gctattgcatctaaagtaagctttatatctataggactgtcacctaagtt
ttatagcctttgatgtcctatggggccatagccctaaataagcattccgt
cctacactggtgcctaaagtggaagaattatccctctttccctaaatggt
taaaaaatattgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_136626571_136627808
seq2: B6Ng01-120L04.g_68_1282

seq1  GAATTCTTAGTTCCACTCATAATCTGTAGCTCCCCATGGAATCTGGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTTCCACTCATAATCTGTAGCTCCCCATGGAATCTGGCACA  50

seq1  GCCACGGCCAAGACCATAGCTTGTTCTGTTCCTGCCCTAACCTTCCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGGCCAAGACCATAGCTTGTTCTGTTCCTGCCCTAACCTTCCTCCC  100

seq1  TATTAAGATGTCTGAGAACACTACCTACAGAAACTCCTTGCACCAGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGATGTCTGAGAACACTACCTACAGAAACTCCTTGCACCAGTTCC  150

seq1  TACTTTAGATCTTAGACTCTACTGTAGGGAACCTGACGTAAGACCACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAGATCTTAGACTCTACTGTAGGGAACCTGACGTAAGACCACTTC  200

seq1  CGGTCATACAGCACTTGGAACAGTCTTAGCTAAGAGACAGGACAGCAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCATACAGCACTTGGAACAGTCTTAGCTAAGAGACAGGACAGCAAGC  250

seq1  TTATGCTTGAACACAGAATCTATGAGTTCTAAGAGAAAGTTAATTCTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTGAACACAGAATCTATGAGTTCTAAGAGAAAGTTAATTCTATG  300

seq1  TATACTAGTAGGGGGGAAGAGAATTTTAGCAACAAGACTCCTCTCTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTAGTAGGGGGGAAGAGAATTTTAGCAACAAGACTCCTCTCTAGTG  350

seq1  ATTAGACACCAAAAAGTCTCATGTCTCTACTAAGCACAGCATTTATTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACACCAAAAAGTCTCATGTCTCTACTAAGCACAGCATTTATTTGC  400

seq1  CCATATCCCACATGGTGTTGCTTTTCTTTCCAAAATGCATCTCACTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCCCACATGGTGTTGCTTTTCTTTCCAAAATGCATCTCACTATTG  450

seq1  CTAGCATTCAGTAGAATTTCAACACAGGCTGACAGCTCACATGTTTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTCAGTAGAATTTCAACACAGGCTGACAGCTCACATGTTTCTAA  500

seq1  GTTTATGTGGGCTCTAGAGTTTACAAAGCACTGTACATACTCCAAGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTGGGCTCTAGAGTTTACAAAGCACTGTACATACTCCAAGCATG  550

seq1  TTTCACAGACTGGTAGCATCTTGTCCTCTGAGAACTAGAGATGCTAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGACTGGTAGCATCTTGTCCTCTGAGAACTAGAGATGCTAAATT  600

seq1  CCATGTGTGCTCCAGACTTACTAAGTGAGACTGTCTTGGCTGGGGTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTGCTCCAGACTTACTAAGTGAGACTGTCTTGGCTGGGGTCAGC  650

seq1  AACCTGAGTTTTAACAAGATCTTAGGATTATTCTTAGGACATGAGTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGTTTTAACAAGATCTTAGGATTATTCTTAGGACATGAGTATTT  700

seq1  GAGGAACATTCATACAAATCATCTCCTACAACTCATTGAAAGGTAGATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACATTCATACAAATCATCTCCTACAACTCATTGAAAGGTAGATTG  750

seq1  GCTGACATGAAATTACAGGCAAAAAAAATGCAATTGCAACAGGAACCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACATGAAATTACAGGCAAAAAAAATGCAATTGCAACAGGAACCAAA  800

seq1  CATTCATATACTTATGAAAACACACACACACACACACACACACACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATATACTTATGAAAACACACACACACACACACACACACACACACA  850

seq1  CACACACAGCTCTGACTTGTTTACATGCTATAAGAGTACAAGGTT-AGGC  899
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  CACACACAGCTCTGACTTGTTTAAATGCTATAAGAGTACAAGGTTAAGGC  900

seq1  CTCAGCAGAGACTCTGAAACCTAGTCCAGCACTTGCTAACTTGAATAAAC  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCAGCAGAGACTCTGAAACCTAGTCCAGCACTTGCTAACTTGAAT-AAC  949

seq1  CATTTATCTCCTTCAGCCTCTGTTTCTTCATCAATAAAATGGAAACAACG  999
      ||||||||| | ||||||||||||||||||||||||||   ||||| |||
seq2  CATTTATCTTCCTCAGCCTCTGTTTCTTCATCAATAAA--TGAAAC-ACG  996

seq1  CCAGGGCTAGTTCACACTAACTTTATGAATGATTAATCCAAAAATGAAAA  1049
      |||||||||| || ||||||||||||| |||| | ||||||||||| |||
seq2  CCAGGGCTAG-TCCCACTAACTTTATG-ATGA-TGATCCAAAAATG-AAA  1042

seq1  AATGAAATGCTATGCAATCTTAAAGGTAAGC-TTATATCTATA-GACTGT  1097
      |||||||||||||   ||||  || |||||| ||||||||||| ||||||
seq2  AATGAAATGCTATTGCATCT--AAAGTAAGCTTTATATCTATAGGACTGT  1090

seq1  CAACTAAG-TCTATAGCCTTTTGATGTTCTATTGGGTCTATAGCCCTTTA  1146
      || ||||| | ||||||| |||||||| ||| |||| | |||||||  ||
seq2  CACCTAAGTTTTATAGCC-TTTGATGTCCTA-TGGGGCCATAGCCC--TA  1136

seq1  ATTAAAGCATTCTGTTCCTACTACTGTTTGCTTAGAAGTTGTAGAGGTAT  1196
      | | |||||||| | |||||| ||||  ||| || |||| | |||  || 
seq2  AAT-AAGCATTCCG-TCCTAC-ACTG-GTGCCTA-AAGTGGAAGAATTA-  1180

seq1  TGATTCCTTCTTTTCTCTAATAATGTTTAAAAAATATTGTTT  1238
          ||| || |||| |||  |||| ||||||||||||||||
seq2  ----TCCCTC-TTTCCCTA--AATGGTTAAAAAATATTGTTT  1215