BAC Information

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BAC

Clone NameB6Ng01-120L17
Chromosome2 (Build37)3 (Build37)
Map Location 68,663,612 - 68,664,368105,885,969 - 105,886,317
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC227995, B3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik
Downstream geneLOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120L17.bB6Ng01-120L17.g
ACCDH924599DH924600
length1,1821,075
definitionDH924599|Mus musculus domesticus DNA, BAC clone: B6Ng01-120L17, 5' end.DH924600|Mus musculus domesticus DNA, BAC clone: B6Ng01-120L17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,663,612 - 68,664,368)(105,885,969 - 105,886,317)
sequence
gaattccacgggcgacaacagtgcagtgtatagtccaagagcacagaact
gaggactgaatatccatatcacaacagaatgctaagggtgatgaatatgc
tgagcccatagttttattgtcatacaagatgagtgatgaattcaactgtc
acgctgtaccccacaaatacacagtcattgtgtatttattgaaagtgaca
atgtatcctgaccatggactgccctccctctcctcctcccagtgcatcac
acacacacacacacacacacacacacacacacacacacacacacacacaa
cttcacttttcttcagaaaagagaacctcttgggaatatcaacaggacat
gacataacaagatgcaataagaccaggcacaaactctcctgtcaagcctg
ggctaggcaaactagtaggagggaaagagtcctaagagtgggcaaaggaa
tcgagacactcccccattgttagaagtccaacaaaaccctccaagctaaa
caaccacagcatatgtgctccgtgatagctacatcagtctctgtgagccc
ctataagccctacttagttaattctgtggaccctgttctcctggtgtctt
atcccactggctcctcaattccaacccccccattacccccccccccccgc
agaatttccccaagctcctcctaatgtttaactgtgggtctctaaatgcc
aattagtttagactgccaccaggactctcctgagatgaaattcaagtaat
tcccccactcctttcctaatggaatatcagtccctaattgtattggaaag
gagaaatgtaaagatggcagtttgtaaattcacatgattgggtacagccc
tgctgttgtgtctttcccaacctctgtcttccgggaagcagaaaaaaagc
cccaaccttcagcttccacagcaggagggaggcagctctgcctcattgca
gcctaggttaagttcctgatcttgattagcctgaatggaaagataggcgc
agagaggacctagctaaatcttcccacagaagtgaagcatggtggggtca
agggagcagcttccccacctctaaggaggagggcgtgggcttggagcttc
aaacgaaaagttggatctgatcagtctttgaggacagagaagaccagtgc
gggtggagtatgagtgtgtgtgggaggaatag
gaattcctttgtgattgggttacctcactcaggatgatgccctccagaac
aaccagttgcctaggaatttcataaattcattctttttttttttttcgtt
ttgtgttggccatttcatcctggtcctactcttttattttatttttttaa
tattttttattacatattttcctcaattacatttccaatgctatcccaaa
agtcccccataacctcccccccccattcccctaaccacccattcccattt
tttggccctggcgttcccctgtactggggcatatacagtttgtgtgtcca
atgggcctctctttccagtgatggcttactaggccatcttttgatataaa
tgcagctagagtcaagagctccagggtactggttagttcataatgttgtt
gcacctacagggttgcagatctctttagctctttggttactttctctaac
tcctccattgggggcactgtgatccatccaatagctgactgtgagcattc
ccttatgtttttgctaggctcctgcctagtctcacaagagacagctatat
cacggtcctttcagcaaacacttgctagtatatgcaatggtgtcatcctt
tggaggctaattatgggatggatctctggatatggcagtctctagatggt
ccatccttttgtctcagctccaaactttgtctctgtaactccttccatga
gtgattgtttccaattctaagaaggggcaaaatgcatggatgcatgggac
aatttcaatatttttgtatatgttgaggcttgtttgtgaccattatgtgg
ttcagttttggagaaggtaccatgatgtgctgagaagaagtatatccttt
tttttaggataaaatgtcctgtagataatctgtaagtccatttgtctcat
aacttctgtagtttcactgtgtccctgtttagttctgttccacgatctgt
cattgatgaaagtggtgtgtgaagtctcccactattattggtgtgagttg
caattgggtgccttggagcttacatagttcttaatggatggtggctgtct
gtatttggaacataatattcagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_68663612_68664368
seq2: B6Ng01-120L17.b_467_1230 (reverse)

seq1  CTATTCCTC---CACACACCCCTACTCACACCGCACTGGTCTTCTCGTCC  47
      |||||||||   ||||||| | |||||   ||||||||||||||||   |
seq2  CTATTCCTCCCACACACACTCATACTCCACCCGCACTGGTCTTCTCTGTC  50

seq1  CTCAAGGCCTGATCAGATCCAACTTCTCGTCTGAAGCCTCCAAGCCCACG  97
      ||||| | ||||||||||||||||| |||| ||||| |||||||||||||
seq2  CTCAAAGACTGATCAGATCCAACTTTTCGTTTGAAG-CTCCAAGCCCACG  99

seq1  -CCTCCTCCTTAGA-GTGGGGACGCTGCTCCC-TGACCCCACCATGCTTC  144
       ||||||||||||| ||||||| ||||||||| |||||||||||||||||
seq2  CCCTCCTCCTTAGAGGTGGGGAAGCTGCTCCCTTGACCCCACCATGCTTC  149

seq1  ACTTCTGTGGGAAGATTTAGCTAGGTCCTCTCTGCGCCTATCTTTCCATT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTGGGAAGATTTAGCTAGGTCCTCTCTGCGCCTATCTTTCCATT  199

seq1  CAGGCTAATCAAGATCAGGGACTTAACCTAGGCTGCAATGAGGCAGAGCC  244
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  CAGGCTAATCAAGATCAGGAACTTAACCTAGGCTGCAATGAGGCAGAG-C  248

seq1  TGCCTCCCTCCTGCTGTGGAAGCTGAAGG-TGGGGC-TTTTCTCTGCTTC  292
      ||||||||||||||||||||||||||||| |||||| |||| ||||||||
seq2  TGCCTCCCTCCTGCTGTGGAAGCTGAAGGTTGGGGCTTTTTTTCTGCTTC  298

seq1  CCGGAAGACAGAGGTTGGGAAAGACACAACAGCAGGGCTGTA-CCAATCA  341
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCGGAAGACAGAGGTTGGGAAAGACACAACAGCAGGGCTGTACCCAATCA  348

seq1  TGTGAATTTACAAACTGCCATCTTTACATTTCTCCTTTCCAATACAATTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTTACAAACTGCCATCTTTACATTTCTCCTTTCCAATACAATTA  398

seq1  GGGACTGATATTCCATTAGGAAAGGAGTGGGGGAATTACTTGAATTTCAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGATATTCCATTAGGAAAGGAGTGGGGGAATTACTTGAATTTCAT  448

seq1  CTCAGGAGAGTCCTGGTGGCAGTCTAAACTAATTGGCATTTAGAGACCCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGAGTCCTGGTGGCAGTCTAAACTAATTGGCATTTAGAGACCCA  498

seq1  CAGTTAAACATTAGGAGGAGCTTGGGGAAATTCTGCGGGGGGGGGGGGGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAACATTAGGAGGAGCTTGGGGAAATTCTGCGGGGGGGGGGGGGT  548

seq1  AATGGGGGGGTTGGAATTGAGGAGCCAGTGGGATAAGACACCAGGAGAAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGGGTTGGAATTGAGGAGCCAGTGGGATAAGACACCAGGAGAAC  598

seq1  AGGGTCCACAGAATTAACTAAGTAGGGCTTATAGGGGCTCACAGAGACTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCACAGAATTAACTAAGTAGGGCTTATAGGGGCTCACAGAGACTG  648

seq1  ATGTAGCTATCACGGAGCACATATGCTGTGGTTGTTTAGCTTGGAGGGTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTATCACGGAGCACATATGCTGTGGTTGTTTAGCTTGGAGGGTT  698

seq1  TTGTTGGACTTCTAACAATGGGGGAGTGTCTCGATTCCTTTGCCCACTCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGACTTCTAACAATGGGGGAGTGTCTCGATTCCTTTGCCCACTCT  748

seq1  TAGGACTCTTTCCCTC  757
      ||||||||||||||||
seq2  TAGGACTCTTTCCCTC  764

seq1: chr3_105885969_105886317
seq2: B6Ng01-120L17.g_805_1142 (reverse)

seq1  ATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCA-CATTCATTAAAG  49
      ||||||||||| |||| ||||||||||  | |||||| ||| ||||||  
seq2  ATTCTGAATAT-TATGTTCCAAATACA--GACAGCCACCATCCATTAA--  45

seq1  AAACTTTAGTAAAGCT-CAAAGCACAC-ATTGCACCTCACA-CAATAATA  96
       |||| | || ||||| ||| |||| | |||||| |||||| ||||||||
seq2  GAACTAT-GT-AAGCTCCAAGGCACCCAATTGCAACTCACACCAATAATA  93

seq1  GTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACA  146
      |||||||||||| |||||||||||||| |||| |||||||| ||| ||||
seq2  GTGGGAGACTTC-ACACACCACTTTCATCAAT-GACAGATCGTGG-AACA  140

seq1  GAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGG  196
      | ||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  G-AACTAAACAGGGACACAGTGAAACT-ACAGAAGTTATGAGACAAATGG  188

seq1  ACTTAACAGA-TATCTACAGAACATTTTATCCTAAAACAAAAGCATATAC  245
      |||| ||||| ||||||||| |||||||||||||||| ||||| ||||| 
seq2  ACTT-ACAGATTATCTACAGGACATTTTATCCTAAAA-AAAAGGATATA-  235

seq1  CTTCTTCTCAGCACCTCATGGTACCTTCTCTAAAATTG-ACCACATAATT  294
      |||||||||||||| ||||||||||||||| |||| || ||||||||| |
seq2  CTTCTTCTCAGCACATCATGGTACCTTCTCCAAAACTGAACCACATAA-T  284

seq1  GGTCACAAAACAAGCCTCAACATATACAAAAATATTGAAATTGTCCCATG  344
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAC-AAACAAGCCTCAACATATACAAAAATATTGAAATTGTCCCATG  333

seq1  CATCC  349
      |||||
seq2  CATCC  338