BAC Information

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BAC

Clone NameB6Ng01-120O12
Chromosome2 (Build37)
Map Location 123,536,651 - 123,662,248
singlet/doubletdoublet
Overlap genenone
Upstream genePldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360, Sema6d, LOC100043367, LOC100043369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120O12.bB6Ng01-120O12.g
ACCDH924726DH924727
length1,1621,090
definitionDH924726|Mus musculus domesticus DNA, BAC clone: B6Ng01-120O12, 5' end.DH924727|Mus musculus domesticus DNA, BAC clone: B6Ng01-120O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,661,079 - 123,662,248)(123,536,651 - 123,537,753)
sequence
gaattccatttctgtcaacctccctgagaattaaatacatatttgccaat
aaacaaataggagtatctgacaaggagatagatagaatgaccatttcatg
aagcaatttgaaaggtatttcttaaaaaaaaaatcagttggtatgaatta
caggcctgctgtaatggatcagtgtaaagcatttgtctgagttcttagga
aatttgtgtttcctctccccaatgtcccaatagaatcatgcattcaaatg
agctatgaagtatgtgtgaatctaaatctttgtaattaaagctacctgca
gagctctccaaatactcttatctgcacccctaggtaggttgtacagaaaa
cattagtctcctatttcaggtaaaagtaggtaatcctaacatccacccac
tcaaccattgggaaggagtcaaaataacaatgccggtgaagtcattcaca
ctgtgtttaatatagaaaaacataataataagtgttacatatacctgtca
aatttataatggactttcttactacctctctgtaaaaacaagagttgctc
ctgaaaccactctctggtgaattaagataagtactgaacctcaaaattgt
aaacattatggatggcttgcttctcactgaaactgttcatgtcttttggc
tccttttccatcccatcttcaagtacgtccttacaaagctctggaatttg
tcccaaccatctcaggtatacctccatgactctatctagttgcatggttc
tatataaacttgcccagattaatacaagttccccagccctacaaagcttc
tctctcccctaataatccttcggtccttcccatagaatgaccgtattagt
acttctaaaatattctggcagtgaagggtattaatgataatataatacat
acgatcatcatctattctaaaattgaacaatatcgattggttaaatggta
tgttcctgaaaatttctggtcactaaattctatcacaaataaagcagaca
ttctctgccatccggaagcctaatcctcacgagcatggtaataagatctt
taaatcatagttgaatgaaaaggaaagttagcatgacgcgttcattttat
gccacattttcttttgacttaaatattgttcagaaattacgggatagttc
ctatgcattact
gaattccttttcttcctgaagtgcagaaaattgaagtgtgggaatcagta
tccaaattttaaaaaacacaaaaaccaaagcaaaataaagaaacaggagt
agctttaagatgaagaaatagactgctaaaccaattaacagtgtattata
aaaatgtttcacatgaccaaagtatcagtctattttaaatggttgcctac
aaatgcagtttataaatatatgtttttccaagtgaacatttattattgga
aggggagatacatccaaagtgttactatagcaatagtgctagaaattgtt
gccatttttatgcatttgtgtgactatgttttaggctaaactgttacagt
tttgggttcagttgattggcaaacttgaaaggcttttcaatctattgtca
agttatcttgtataatgagtgttgatagacatttgttttgttcttgccaa
caattccattgaattcttacagaatttcttagcaaaagttgttctctctc
atttaggtcaacactaatctcatcattcatgagacatgaatacattatgt
gtcattcactatttcatatttcagaacactcaatgtccccatttgtctag
cttccattgatagtgtgttgtttcacacggagcttcataatgtcattgtc
tcacacttcaggtaatatttcagttaggaaccgaccacacacagcagaga
tgcctcaagattggaatggggctaaacgactcctctcctagtgctgttgt
gggtataatattggtgtagtgtgactatttgtccaagtgattgttcagca
gttaaagaagcctgttgttggcagatgtaaaaagtgtgcgacaatccaca
gtgcagaacacataacacctgtattgacaactgtgctatattctgttcgc
tgcgttgcagctaaactctttctggggcactttgtcccactggcatgatc
acatctgtcagtgtccataactctgatgcagcatggttctgttgagtgaa
gactacaccaatttatctctctgtctgcctagtctcatgatatggtgaaa
atatctattgatgccttctcagatgcagtctggtaagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123661079_123662248
seq2: B6Ng01-120O12.b_49_1210 (reverse)

seq1  AGTAATGCATATGAACTATCCTGT-ATATCTG-ACAATATTTAAGTCAAA  48
      ||||||||||| ||||||||| || || |||| |||||||||||||||||
seq2  AGTAATGCATAGGAACTATCCCGTAATTTCTGAACAATATTTAAGTCAAA  50

seq1  AGAAAAATGTTGCATAAAAATGAAAAGCGTTCATGCTAAACTTTCCTATT  98
      || ||||||| |||| |||||| || ||| ||||||| ||||||||| ||
seq2  AG-AAAATGTGGCAT-AAAATG-AACGCG-TCATGCT-AACTTTCCT-TT  94

seq1  TCATTCAACTATGATTTAAAGATCTTATTACCATGCTCGTGAGGATTAGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAACTATGATTTAAAGATCTTATTACCATGCTCGTGAGGATTAGG  144

seq1  CTTCCGGATGGCAGAGAATGTCTGCTTTATTTGTTGATAGAATTTAGTGA  198
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTCCGGATGGCAGAGAATGTCTGCTTTATTTG-TGATAGAATTTAGTGA  193

seq1  CCAGAAATTTTTCAGGAACATACCATTTAACCAATCGATATTTGTTCAAT  248
      ||||||| |||||||||||||||||||||||||||||||| |||||||| 
seq2  CCAGAAA-TTTTCAGGAACATACCATTTAACCAATCGATA-TTGTTCAA-  240

seq1  TTTTAGAATAGATGATGATCGTATGTATTATATTATCATTAATACCCTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAATAGATGATGATCGTATGTATTATATTATCATTAATACCCTTC  290

seq1  ACTGCCAGAATATTTTAGAAGTACTAATACGGTCATTCTATGGGAAGGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGAATATTTTAGAAGTACTAATACGGTCATTCTATGGGAAGGAC  340

seq1  CGAAGGATTATTAGGGGAGAGAGAAGCTTTGTAGGGCTGGGGAACTTGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGATTATTAGGGGAGAGAGAAGCTTTGTAGGGCTGGGGAACTTGTA  390

seq1  TTAATCTGGGCAAGTTTATATAGAACCATGCAACTAGATAGAGTCATGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTGGGCAAGTTTATATAGAACCATGCAACTAGATAGAGTCATGGA  440

seq1  GGTATACCTGAGATGGTTGGGACAAATTCCAGAGCTTTGTAAGGACGTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATACCTGAGATGGTTGGGACAAATTCCAGAGCTTTGTAAGGACGTAC  490

seq1  TTGAAGATGGGATGGAAAAGGAGCCAAAAGACATGAACAGTTTCAGTGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATGGGATGGAAAAGGAGCCAAAAGACATGAACAGTTTCAGTGAG  540

seq1  AAGCAAGCCATCCATAATGTTTACAATTTTGAGGTTCAGTACTTATCTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCCATCCATAATGTTTACAATTTTGAGGTTCAGTACTTATCTTA  590

seq1  ATTCACCAGAGAGTGGTTTCAGGAGCAACTCTTGTTTTTACAGAGAGGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCAGAGAGTGGTTTCAGGAGCAACTCTTGTTTTTACAGAGAGGTA  640

seq1  GTAAGAAAGTCCATTATAAATTTGACAGGTATATGTAACACTTATTATTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAAGTCCATTATAAATTTGACAGGTATATGTAACACTTATTATTA  690

seq1  TGTTTTTCTATATTAAACACAGTGTGAATGACTTCACCGGCATTGTTATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTATATTAAACACAGTGTGAATGACTTCACCGGCATTGTTATT  740

seq1  TTGACTCCTTCCCAATGGTTGAGTGGGTGGATGTTAGGATTACCTACTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCCTTCCCAATGGTTGAGTGGGTGGATGTTAGGATTACCTACTTT  790

seq1  TACCTGAAATAGGAGACTAATGTTTTCTGTACAACCTACCTAGGGGTGCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAAATAGGAGACTAATGTTTTCTGTACAACCTACCTAGGGGTGCA  840

seq1  GATAAGAGTATTTGGAGAGCTCTGCAGGTAGCTTTAATTACAAAGATTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAGTATTTGGAGAGCTCTGCAGGTAGCTTTAATTACAAAGATTTA  890

seq1  GATTCACACATACTTCATAGCTCATTTGAATGCATGATTCTATTGGGACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACACATACTTCATAGCTCATTTGAATGCATGATTCTATTGGGACA  940

seq1  TTGGGGAGAGGAAACACAAATTTCCTAAGAACTCAGACAAATGCTTTACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGAGGAAACACAAATTTCCTAAGAACTCAGACAAATGCTTTACA  990

seq1  CTGATCCATTACAGCAGGCCTGTAATTCATACCAACTGATTTTTTTTTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCATTACAGCAGGCCTGTAATTCATACCAACTGATTTTTTTTTTA  1040

seq1  AGAAATACCTTTCAAATTGCTTCATGAAATGGTCATTCTATCTATCTCCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACCTTTCAAATTGCTTCATGAAATGGTCATTCTATCTATCTCCT  1090

seq1  TGTCAGATACTCCTATTTGTTTATTGGCAAATATGTATTTAATTCTCAGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATACTCCTATTTGTTTATTGGCAAATATGTATTTAATTCTCAGG  1140

seq1  GAGGTTGACAGAAATGGAATTC  1170
      ||||||||||||||||||||||
seq2  GAGGTTGACAGAAATGGAATTC  1162

seq1: chr2_123536651_123537753
seq2: B6Ng01-120O12.g_68_1157

seq1  GAATTCCTTTTCTTCCTGAAGTGCAGAAAATTGAAGTGTGGGAATCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTCTTCCTGAAGTGCAGAAAATTGAAGTGTGGGAATCAGTA  50

seq1  TCCAAATTTTAAAAAACACAAAAACCAAAGCAAAATAAAGAAACAGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATTTTAAAAAACACAAAAACCAAAGCAAAATAAAGAAACAGGAGT  100

seq1  AGCTTTAAGATGAAGAAATAGACTGCTAAACCAATTAACAGTGTATTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAAGATGAAGAAATAGACTGCTAAACCAATTAACAGTGTATTATA  150

seq1  AAAATGTTTCACATGACCAAAGTATCAGTCTATTTTAAATGGTTGCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTCACATGACCAAAGTATCAGTCTATTTTAAATGGTTGCCTAC  200

seq1  AAATGCAGTTTATAAATATATGTTTTTCCAAGTGAACATTTATTATTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGTTTATAAATATATGTTTTTCCAAGTGAACATTTATTATTGGA  250

seq1  AGGGGAGATACATCCAAAGTGTTACTATAGCAATAGTGCTAGAAATTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGATACATCCAAAGTGTTACTATAGCAATAGTGCTAGAAATTGTT  300

seq1  GCCATTTTTATGCATTTGTGTGACTATGTTTTAGGCTAAACTGTTACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTTATGCATTTGTGTGACTATGTTTTAGGCTAAACTGTTACAGT  350

seq1  TTTGGGTTCAGTTGATTGGCAAACTTGAAAGGCTTTTCAATCTATTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTCAGTTGATTGGCAAACTTGAAAGGCTTTTCAATCTATTGTCA  400

seq1  AGTTATCTTGTATAATGAGTGTTGATAGACATTTGTTTTGTTCTTGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCTTGTATAATGAGTGTTGATAGACATTTGTTTTGTTCTTGCCAA  450

seq1  CAATTCCATTGAATTCTTACAGAATTTCTTAGCAAAAGTTGTTCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCATTGAATTCTTACAGAATTTCTTAGCAAAAGTTGTTCTCTCTC  500

seq1  ATTTAGGTCAACACTAATCTCATCATTCATGAGACATGAATACATTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTCAACACTAATCTCATCATTCATGAGACATGAATACATTATGT  550

seq1  GTCATTCACTATTTCATATTTCAGAACACTCAATGTCCCCATTTGTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCACTATTTCATATTTCAGAACACTCAATGTCCCCATTTGTCTAG  600

seq1  CTTCCATTGATAGTGTGTTGTTTCACACGGAGCTTCATAATGTCATTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTGATAGTGTGTTGTTTCACACGGAGCTTCATAATGTCATTGTC  650

seq1  TCACACTTCAGGTAATATTTCAGTTAGGAACCGACCACACACAGCAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTCAGGTAATATTTCAGTTAGGAACCGACCACACACAGCAGAGA  700

seq1  TGCCTCAAGATTGGAATGGGGCTAAACGACTCCTCTCCTAGTGCTGTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAAGATTGGAATGGGGCTAAACGACTCCTCTCCTAGTGCTGTTGT  750

seq1  GGGTATAATATTGGTGTAGTGTGACTATTTGTCCAAGTGATTGTTCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATAATATTGGTGTAGTGTGACTATTTGTCCAAGTGATTGTTCAGCA  800

seq1  GTTAAAGAAGCCTGTTGTTGGCAGATGTATAAAAGTGTGCGACAATCCAC  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTTAAAGAAGCCTGTTGTTGGCAGATGTA-AAAAGTGTGCGACAATCCAC  849

seq1  AGTGCAGAACACATAACACCTGTATTGACAACTGTGCTAATATTCTGTTC  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTGCAGAACACATAACACCTGTATTGACAACTGTGCT-ATATTCTGTTC  898

seq1  GCTGCGGTTGCAGGCTAAACTCTTTCTGGGGCACTTTGTCCCACTGGCAA  950
      ||||| |||||| ||||||||||||||||||||||||||||||||||| |
seq2  GCTGC-GTTGCA-GCTAAACTCTTTCTGGGGCACTTTGTCCCACTGGC-A  945

seq1  TGATCACATCTGTCAAGTGTCCATAACTCTTGATTGCAGCATGGTGTCGT  1000
      |||||||||||||| |||||||||||||| ||| ||||||||||| || |
seq2  TGATCACATCTGTC-AGTGTCCATAACTC-TGA-TGCAGCATGGT-TC-T  990

seq1  GTTGAGTGAAAGACTAACACAATTTATCTCTCTGTCTG-CTAGTCTCATG  1049
      |||||||| |||||||   ||||||||||||||||||| |||||||||||
seq2  GTTGAGTG-AAGACTACACCAATTTATCTCTCTGTCTGCCTAGTCTCATG  1039

seq1  ATTATGGTG-ACATATCCTATGAATGCCTTCTCAGTATGCAGTCTTGTTA  1098
      | ||||||| | |||| ||||  |||||||||||| |||||||| || ||
seq2  A-TATGGTGAAAATAT-CTATTGATGCCTTCTCAG-ATGCAGTC-TGGTA  1085

seq1  AGTGA  1103
      |||||
seq2  AGTGA  1090