BAC Information

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BAC

Clone NameB6Ng01-120O21
Chromosome2 (Build37)
Map Location 65,777,751 - 65,921,754
singlet/doubletdoublet
Overlap geneA330102K23Rik, Galnt3
Upstream geneGrb14, Cobll1, LOC383705, 9330158F14Rik, Scn3a, Scn2a1
Downstream geneLOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120O21.bB6Ng01-120O21.g
ACCDH924743DH924744
length1,1261,087
definitionDH924743|Mus musculus domesticus DNA, BAC clone: B6Ng01-120O21, 5' end.DH924744|Mus musculus domesticus DNA, BAC clone: B6Ng01-120O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,920,629 - 65,921,754)(65,777,751 - 65,778,833)
sequence
gaattcattgttttaaaatccaggtaaacttatgttgtctcttgttgact
tgtctgtcaaatatttccttaaacatgaagttgataaggagaggactatt
tttaacatttaaatttttggaaaatttacaaatattttttagaagcccac
tccacttgatgcacatgagtcttccccaaatagcttttctgaagtgacta
tactgtgtgttttctcagagtactttttaaaaaataaataaactttataa
attattagctgttaataatggttctttttttctttctagtagtcttgttt
tcttagcaaaattcactaatcttgaatatttatgacactgaattttaaat
gcagaaaattgactcaaccctaaatttcgttgaatcattacataaactat
cttttcaataggtttatctcatcaaattaaaaaagagccttgattttatc
tacatagaaaatgtaaattaaaaaagaagaaccctaaacacaattacaaa
tctttgtttcagttttgtccagttggagcaagatttgtaattgatggcgg
cgggcggagagcatccattttttcactctagattttagtcatctgctgtt
tgtggagccccaggttcctttaaggaaaatgtaaaccgtgacaccagtgt
gacaacagaagcgaagataagatactggtggaaatgtgaacctttgataa
catcctttaatgacctcttaaaattatcttttgaagtcaccattttctct
ttggccattttacagagaaaggtcttgtattattccagaagcaaaataga
atttgtgtgaaccctttgaaactagtgggtctcagttaacaaaagaaaac
atttcctagaattatagttttattaaaaaaaataaagcatccattaaatt
ttaatatcgattaaaattccatattctctagccagttgctttgcagactc
ttattttagtttaggaatatgtaccgtgttattaactttgtgtcagggtt
acagaggcctgtagactttgccattcatctgtcttctttaggggtaggag
aaaaagtaccaccccttgaaacagatgcggctttttttatatttttatgg
actaggatgacctcccctctggttta
gaattctcattagaactactatgtttgaaacagggcaatatagccatctt
ttaggaaaggcagatgtttggggaaatatactccaacctagaacatccct
gtcacccagtcacaaacttataggttgatagactgatagacaccagtttg
ggtagttgtttaagaatgctgtggggcagaagggagaacaatgaaattgc
aagggatattctgagagatacttcgggctcttttcatgcatgccagagaa
catgaggctgtagtgctagggggtagcccagtgtacagcacttgcttcgc
acactgaagcactacatttgatccctagctcctcctccaaaacaaggcag
ctcagagcttgtgttttaacttgggtaacccactcatctgggaaagcaaa
tggggccaatggatcctcaaagttcttttgactctgcgaacgaatgtgct
caaatgagccatccctccaggttctttattcaccaaagtggaggggaaga
tagctaataaccagagaagagcttcctaaactcagatcccataaacagat
gccatatatgtttgtgcttttgtacacttttcctctggggggagagggaa
gggtcgattgcttctgtctccttaaacttcaaattatcagatggcaaaaa
atgttgatattcactgcataagaatgaagataaaaatcttttaactcaaa
gtcacagacgtctccaactcgggggattcatacatcactggggaaatccc
acagtcatttcttccaacaaaaatatttattaggcaggattgctgccagg
gttcttggcttccacagacacctggacagagaggcgttggctgacttctg
tttctcccactggcaacccaccagcagcatttttcacattgggtagtgcc
ccacagaaacacctacagggcttcaccttgcgaaatctgtgccaatcctg
ctccttcttggcagcaaaggagctgcttttcttgccaattgggctaaggc
agaactgggccctagtattggggacgaagatacctttcactttcttaggg
aaaaaatacatccttctcactacgtatgaactgatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_65920629_65921754
seq2: B6Ng01-120O21.b_44_1169 (reverse)

seq1  TAAAACAGA--GGAAGTCATCTTAGT-CATAAAAATAT-AACATAGCGGC  46
      |||| ||||  ||| |||||| |||| ||||||||||| || | ||| ||
seq2  TAAACCAGAGGGGAGGTCATCCTAGTCCATAAAAATATAAAAAAAGCCGC  50

seq1  ATACTGTTTCAAAAGGGTGTACTTTTCTTCCTA-CCCTAAAG-AGACAGA  94
      || |||||||||  ||  ||||||||  ||||| |||||||| |||||||
seq2  AT-CTGTTTCAAGGGGTGGTACTTTTTCTCCTACCCCTAAAGAAGACAGA  99

seq1  TGAATGGCAAAGTCTTACA-GCCTCTGTAACCCCTGACACAAAGTTATAA  143
      |||||||||||||| |||| |||||||||| ||||||||||||||||  |
seq2  TGAATGGCAAAGTC-TACAGGCCTCTGTAA-CCCTGACACAAAGTTAATA  147

seq1  ACACGGTACATATTCCTTAAACTAAAATAAGAGTCTGCAAAGCAACTGGC  193
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACACGGTACATATTCC-TAAACTAAAATAAGAGTCTGCAAAGCAACTGGC  196

seq1  TAGAGAATATGGAATTTTTAATTCGATATTTAAAATTTAATGGATGCTTT  243
      ||||||||||||||||||  | |||||| |||||||||||||||||||||
seq2  TAGAGAATATGGAATTTT--AATCGATA-TTAAAATTTAATGGATGCTTT  243

seq1  ATTTTTTTTAATTAAAACTATAATTCTAGGAAATGTTTTCTTTTGTTAAC  293
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTAA-TAAAACTATAATTCTAGGAAATGTTTTCTTTTGTTAAC  292

seq1  TGAGACCCACTAGTTTCAAA-GGTTCACACAAATTCTATTTTGCTTCTGG  342
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAGACCCACTAGTTTCAAAGGGTTCACACAAATTCTATTTTGCTTCTGG  342

seq1  AATAATACAAGACCTTTCTCTGTAAAATGGCCAAAGAGAAAATGGTGACT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACAAGACCTTTCTCTGTAAAATGGCCAAAGAGAAAATGGTGACT  392

seq1  TCAAAAGATAATTTTAAGAGGTCATTAAAGGATGTTATCAAAGGTTCACA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGATAATTTTAAGAGGTCATTAAAGGATGTTATCAAAGGTTCACA  442

seq1  TTTCCACCAGTATCTTATCTTCGCTTCTGTTGTCACACTGGTGTCACGGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCAGTATCTTATCTTCGCTTCTGTTGTCACACTGGTGTCACGGT  492

seq1  TTACATTTTCCTTAAAGGAACCTGGGGCTCCACAAACAGCAGATGACTAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTTCCTTAAAGGAACCTGGGGCTCCACAAACAGCAGATGACTAA  542

seq1  AATCTAGAGTGAAAAAATGGATGCTCTCCGCCCGCCGCCATCAATTACAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGAGTGAAAAAATGGATGCTCTCCGCCCGCCGCCATCAATTACAA  592

seq1  ATCTTGCTCCAACTGGACAAAACTGAAACAAAGATTTGTAATTGTGTTTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTCCAACTGGACAAAACTGAAACAAAGATTTGTAATTGTGTTTA  642

seq1  GGGTTCTTCTTTTTTAATTTACATTTTCTATGTAGATAAAATCAAGGCTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTTCTTTTTTAATTTACATTTTCTATGTAGATAAAATCAAGGCTC  692

seq1  TTTTTTAATTTGATGAGATAAACCTATTGAAAAGATAGTTTATGTAATGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATTTGATGAGATAAACCTATTGAAAAGATAGTTTATGTAATGA  742

seq1  TTCAACGAAATTTAGGGTTGAGTCAATTTTCTGCATTTAAAATTCAGTGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACGAAATTTAGGGTTGAGTCAATTTTCTGCATTTAAAATTCAGTGT  792

seq1  CATAAATATTCAAGATTAGTGAATTTTGCTAAGAAAACAAGACTACTAGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATATTCAAGATTAGTGAATTTTGCTAAGAAAACAAGACTACTAGA  842

seq1  AAGAAAAAAAGAACCATTATTAACAGCTAATAATTTATAAAGTTTATTTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAGAACCATTATTAACAGCTAATAATTTATAAAGTTTATTTA  892

seq1  TTTTTTAAAAAGTACTCTGAGAAAACACACAGTATAGTCACTTCAGAAAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAAGTACTCTGAGAAAACACACAGTATAGTCACTTCAGAAAA  942

seq1  GCTATTTGGGGAAGACTCATGTGCATCAAGTGGAGTGGGCTTCTAAAAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGGGGAAGACTCATGTGCATCAAGTGGAGTGGGCTTCTAAAAAA  992

seq1  TATTTGTAAATTTTCCAAAAATTTAAATGTTAAAAATAGTCCTCTCCTTA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAAATTTTCCAAAAATTTAAATGTTAAAAATAGTCCTCTCCTTA  1042

seq1  TCAACTTCATGTTTAAGGAAATATTTGACAGACAAGTCAACAAGAGACAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTCATGTTTAAGGAAATATTTGACAGACAAGTCAACAAGAGACAA  1092

seq1  CAAAAGTTTACCTGGATTTTAAAACAATGAATTC  1126
      || |||||||||||||||||||||||||||||||
seq2  CATAAGTTTACCTGGATTTTAAAACAATGAATTC  1126

seq1: chr2_65777751_65778833
seq2: B6Ng01-120O21.g_66_1152

seq1  GAATTCTCATTAGAACTACTATGTTTGAAACAGGGCAATATAGCCATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTAGAACTACTATGTTTGAAACAGGGCAATATAGCCATCTT  50

seq1  TTAGGAAAGGCAGATGTTTGGGGAAATATACTCCAACCTAGAACATCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAAGGCAGATGTTTGGGGAAATATACTCCAACCTAGAACATCCCT  100

seq1  GTCACCCAGTCACAAACTTATAGGTTGATAGACTGATAGACACCAGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCAGTCACAAACTTATAGGTTGATAGACTGATAGACACCAGTTTG  150

seq1  GGTAGTTGTTTAAGAATGCTGTGGGGCAGAAGGGAGAACAATGAAATTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTGTTTAAGAATGCTGTGGGGCAGAAGGGAGAACAATGAAATTGC  200

seq1  AAGGGATATTCTGAGAGATACTTCGGGCTCTTTTCATGCATGCCAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATATTCTGAGAGATACTTCGGGCTCTTTTCATGCATGCCAGAGAA  250

seq1  CATGAGGCTGTAGTGCTAGGGGGTAGCCCAGTGTACAGCACTTGCTTCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGCTGTAGTGCTAGGGGGTAGCCCAGTGTACAGCACTTGCTTCGC  300

seq1  ACACTGAAGCACTACATTTGATCCCTAGCTCCTCCTCCAAAACAAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAGCACTACATTTGATCCCTAGCTCCTCCTCCAAAACAAGGCAG  350

seq1  CTCAGAGCTTGTGTTTTAACTTGGGTAACCCACTCATCTGGGAAAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGCTTGTGTTTTAACTTGGGTAACCCACTCATCTGGGAAAGCAAA  400

seq1  TGGGGCCAATGGATCCTCAAAGTTCTTTTGACTCTGCGAACGAATGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCAATGGATCCTCAAAGTTCTTTTGACTCTGCGAACGAATGTGCT  450

seq1  CAAATGAGCCATCCCTCCAGGTTCTTTATTCACCAAAGTGGAGGGGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGCCATCCCTCCAGGTTCTTTATTCACCAAAGTGGAGGGGAAGA  500

seq1  TAGCTAATAACCAGAGAAGAGCTTCCTAAACTCAGATCCCATAAACAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAATAACCAGAGAAGAGCTTCCTAAACTCAGATCCCATAAACAGAT  550

seq1  GCCATATATGTTTGTGCTTTTGTACACTTTTCCTCTGGGGGGAGAGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATATGTTTGTGCTTTTGTACACTTTTCCTCTGGGGGGAGAGGGAA  600

seq1  GGGTCGATTGCTTCTGTCTCCTTAAACTTCAAATTATCAGATGGCAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGATTGCTTCTGTCTCCTTAAACTTCAAATTATCAGATGGCAAAAA  650

seq1  ATGTTGATATTCACTGCATAAGAATGAAGATAAAAATC-TTTAACTCAAA  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGTTGATATTCACTGCATAAGAATGAAGATAAAAATCTTTTAACTCAAA  700

seq1  GTCACAGACGTCTCCAACTCGGGGGATTCATACATCACTGGGGAAATCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGACGTCTCCAACTCGGGGGATTCATACATCACTGGGGAAATCCC  750

seq1  ACAGTCATTTCTTCCAACAAAAATATTTATTAGGCAGGATTGCTGCCAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCATTTCTTCCAACAAAAATATTTATTAGGCAGGATTGCTGCCAGG  800

seq1  GTTCTTGGCTTCCACAGACACCTGGACAAGAGAGGCGTTGGCTGACTTCT  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTTCTTGGCTTCCACAGACACCTGGAC-AGAGAGGCGTTGGCTGACTTCT  849

seq1  GTTTCTCCCACTGGCAACCCACCAGCAGCATTTTTCACATT-GGTAGTGC  898
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTTCTCCCACTGGCAACCCACCAGCAGCATTTTTCACATTGGGTAGTGC  899

seq1  CCCACAGAAACACCTACAGGGCTTCACCTTGCGAAATCTGTGCCAAATCC  948
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCACAGAAACACCTACAGGGCTTCACCTTGCGAAATCTGTGCC-AATCC  948

seq1  TGCTCC-TCTTGGCAGCAAAGGAGCTGC-TTTCTTGCCAAATGGGCTTAG  996
      |||||| ||||||||||||||||||||| ||||||||||| |||||| ||
seq2  TGCTCCTTCTTGGCAGCAAAGGAGCTGCTTTTCTTGCCAATTGGGCTAAG  998

seq1  GCAGAACT-GGCCCTAGTATTGGGGACGAAGATA-CTTTCACTTTCTTAG  1044
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  GCAGAACTGGGCCCTAGTATTGGGGACGAAGATACCTTTCACTTTCTTAG  1048

seq1  GGAAAAATATACAT-CTTCTCACTACGTATAGACTGATAC  1083
      ||||||| |||||| |||||||||||||||  ||||||||
seq2  GGAAAAA-ATACATCCTTCTCACTACGTATGAACTGATAC  1087