BAC Information

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BAC

Clone NameB6Ng01-121C24
Chromosome2 (Build37)5 (Build37)
Map Location 142,777,247 - 142,777,69875,155,649 - 75,156,697
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121C24.bB6Ng01-121C24.g
ACCDH924934DH924935
length1,0481,053
definitionDH924934|Mus musculus domesticus DNA, BAC clone: B6Ng01-121C24, 5' end.DH924935|Mus musculus domesticus DNA, BAC clone: B6Ng01-121C24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,777,247 - 142,777,698)(75,155,649 - 75,156,697)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagtacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gcaagacagccatttctatacatcatgctgggaaaactgaatgtccacaa
gcagaagagtgaagctagatccccacctctaacaaaacatccactccaca
cagatcaaatgctataatgtaacgcccaaacctgctggtcaaagagggag
acatttcaacataaagccattcacagactatagatttatgcagaggactt
gagtttctcaggaattaatgacagcaactgcaaaatggaatccacagctc
atgctcttgcacagaaaaggaaactataaattgagcaaagaaacaggcta
cagaatagaaaaaaaatctttgctagttatgtatctgatagagaaaattt
tatatatcagaaaatcaacaacccaatcaatgagtaggctctaaaatgaa
cagataaccctcagaagaagagacacatgattaataaacacatggaaaaa
ttcagctccacagtcaatagagggatgcaagttaaaactaaattctagtc
actgtcaattactaagaaacagataacaaatccttgtgagtgtgtgcact
gagcaaccaagaccaatccccaaaactatcgaccgaagcaaacttctc
gaattctttcagtgtgtacttgcccatgggcattctaagcaggctcagtg
tccctgaatttgactactaagacagagtcagtccttgaatgtggagaaag
ttgccgcactaagcgcagacctcagatctctaccctgcagctttgaggat
aaaggtgggacaagttcaaagccagccatatggtagttttggactggcaa
ggcagctgccaatagtgtgaggcaagccctgtgggcaggggatggcaggc
cagctgtggggtggggtccatcaaagggcaggtgaagcagataagacttc
gtctgcccagacaagtgtttctgattctgccccccatctttggccctaga
agaaaaaaaaaagtgattagccaggattttagaacagtatggctgtgttc
ttgcttatttaaagtttctatatggtgcctttctcactttaaaaaatgaa
acatttaggctggagaaatggcttagccattgtgatacgtactgctcttt
cagaagactcaaactggattcctagcatcaatgagggtcagctcacaact
gcctagaactccagccccacgggaatctgacatttgtgttctccgtaagc
accaggggtgtatacataattaaaacaaaataaatgtttggggagagaga
gagagagagaatatgactcctcaaaaaaagtgtccccatccagaaaatga
gtataagaaaagtgaaagttactgagttctccacactccgtgcctgtgct
gatccactcgcagaaataacaactgtgtcactggtgatttaccggacatg
aaaccttctaaacatatttctgtagacacgcgtgcacaagaccaccaaga
aaagaagaagaagagaaaaccattccccaccgttctggaaaataatactt
aaaccaattttaaatacatttatattctaaccacttacctgaataatttc
tccctttgtatgtgtatgcacatctaagtcagagctataggatccagttc
tcctgctggctcatgtggatcccggagtcatcctgaatgtcatgtttgga
ttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142777247_142777698
seq2: B6Ng01-121C24.b_44_495 (reverse)

seq1  GCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGA  50
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAGA  50

seq1  ATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTG  100

seq1  GATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  150

seq1  AAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAAC  200

seq1  AGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCT  250
      |||| ||||||||||||| |||||||||||||||| ||||||||||||||
seq2  AGAACAGCAATGGCTTGTACTGTAAGATCGAGAATCGACAAATGGGACCT  250

seq1  AATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAA  300
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  AATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAA  300

seq1  AAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGAT  350
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGAT  350

seq1  AGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAG  400

seq1  AAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAAT  450

seq1  TC  452
      ||
seq2  TC  452

seq1: chr5_75155649_75156697
seq2: B6Ng01-121C24.g_65_1117

seq1  GAATTCTTTCAGTGTGTACTTGCCCATGGGCATTCTAAGCAGGCTCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGTGTGTACTTGCCCATGGGCATTCTAAGCAGGCTCAGTG  50

seq1  TCCCTGAATTTGACTACTAAGACAGAGTCAGTCCTTGAATGTGGAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAATTTGACTACTAAGACAGAGTCAGTCCTTGAATGTGGAGAAAG  100

seq1  TTGCCGCACTAAGCGCAGACCTCAGATCTCTACCCTGCAGCTTTGAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGCACTAAGCGCAGACCTCAGATCTCTACCCTGCAGCTTTGAGGAT  150

seq1  AAAGGTGGGACAAGTTCAAAGCCAGCCATATGGTAGTTTTGGACTGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGGACAAGTTCAAAGCCAGCCATATGGTAGTTTTGGACTGGCAA  200

seq1  GGCAGCTGCCAATAGTGTGAGGCAAGCCCTGTGGGCAGGGGATGGCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGCCAATAGTGTGAGGCAAGCCCTGTGGGCAGGGGATGGCAGGC  250

seq1  CAGCTGTGGGGTGGGGTCCATCAAAGGGCAGGTGAAGCAGATAAGACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGGGGTGGGGTCCATCAAAGGGCAGGTGAAGCAGATAAGACTTC  300

seq1  GTCTGCCCAGACAAGTGTTTCTGATTCTGCCCCCCATCTTTGGCCCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCCAGACAAGTGTTTCTGATTCTGCCCCCCATCTTTGGCCCTAGA  350

seq1  AGAAAAAAAAAAGTGATTAGCCAGGATTTTAGAACAGTATGGCTGTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAAAGTGATTAGCCAGGATTTTAGAACAGTATGGCTGTGTTC  400

seq1  TTGCTTATTTAAAGTTTCTATATGGTGCCTTTCTCACTTTAAAAAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATTTAAAGTTTCTATATGGTGCCTTTCTCACTTTAAAAAATGAA  450

seq1  ACATTTAGGCTGGAGAAATGGCTTAGCCATTGTGATACGTACTGCTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAGGCTGGAGAAATGGCTTAGCCATTGTGATACGTACTGCTCTTT  500

seq1  CAGAAGACTCAAACTGGATTCCTAGCATCAATGAGGGTCAGCTCACAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACTCAAACTGGATTCCTAGCATCAATGAGGGTCAGCTCACAACT  550

seq1  GCCTAGAACTCCAGCCCCACGGGAATCTGACATTTGTGTTCTCCGTAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAACTCCAGCCCCACGGGAATCTGACATTTGTGTTCTCCGTAAGC  600

seq1  ACCA-GGGTGTATACATAATTAAAACAAAATAAATGTTT-GGGAGAGAGA  648
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACCAGGGGTGTATACATAATTAAAACAAAATAAATGTTTGGGGAGAGAGA  650

seq1  GAGAGAGAGAATATGACTCCTCAAAAAAAGTGTCCCCATCCAG-AAATGA  697
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGAGAGAGAATATGACTCCTCAAAAAAAGTGTCCCCATCCAGAAAATGA  700

seq1  GTATAAGAAAAGTGAAAGTTACTGAGTTCTCCACACTCCGTGCCTGTGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGAAAAGTGAAAGTTACTGAGTTCTCCACACTCCGTGCCTGTGCT  750

seq1  GATCCACTCGCAGAAATAACAACTGTGTCACT-GTGATTTACCGGACATG  796
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GATCCACTCGCAGAAATAACAACTGTGTCACTGGTGATTTACCGGACATG  800

seq1  AAACCTTCTAAACATATTTCTGTAGACACGCGTGCACAAGA-CACCAAGA  845
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAACCTTCTAAACATATTTCTGTAGACACGCGTGCACAAGACCACCAAGA  850

seq1  GAAG-AGAAGAAGAGAAAACCATTCCC--ACGTTCTGGAAATTAATACTT  892
       ||| ||||||||||||||||||||||   ||||||||||| ||||||||
seq2  AAAGAAGAAGAAGAGAAAACCATTCCCCACCGTTCTGGAAAATAATACTT  900

seq1  AAACAAATTTTAAATTACATTTATA-TCTAACCACTTACCTGATAATTTT  941
      |||| ||||||||| |||||||||| |||||||||||||||||  | |||
seq2  AAACCAATTTTAAA-TACATTTATATTCTAACCACTTACCTGAATAATTT  949

seq1  CTCCCTTTGTATGTGTATGCACATCTTAGGGTCAGAGCTATAGGATCCAG  991
      |||||||||||||||||||||||||| |  ||||||||||||||||||||
seq2  CTCCCTTTGTATGTGTATGCACATCTAA--GTCAGAGCTATAGGATCCAG  997

seq1  TTCT-CTGCTGGCTTCATGTGGATCCCGGAGTCCATCTTGGATTGTCATG  1040
      |||| |||||||| |||||||||||||||||| |||| | || |||||||
seq2  TTCTCCTGCTGGC-TCATGTGGATCCCGGAGT-CATCCT-GAATGTCATG  1044

seq1  TTTGGATTG  1049
      |||||||||
seq2  TTTGGATTG  1053