BAC Information

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BAC

Clone NameB6Ng01-121E24
Chromosome12 (Build37)2 (Build37)
Map Location 4,747,592 - 4,748,710161,115,701 - 161,116,136
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDtnb, Dnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik
Downstream geneA830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29, 2810032G03Rik, LOC435292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121E24.bB6Ng01-121E24.g
ACCDH925027DH925028
length1,102445
definitionDH925027|Mus musculus domesticus DNA, BAC clone: B6Ng01-121E24, 5' end.DH925028|Mus musculus domesticus DNA, BAC clone: B6Ng01-121E24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,747,592 - 4,748,710)(161,115,701 - 161,116,136)
sequence
gaattcatggaaacactgggtttagtgttaaagcagcatagataacaggc
ttggacagtatgaggcacaagaaaaagatcctgggaaagatacatgtatg
tgtgttccatctgtgtgtgtgtgttttaaagatttatttattattataaa
caagtacactgttgctgccttcagatactccagaaggggcgtcagatctc
attatgggtggttgtgagccacatgtggttgctaggatttgaactcggga
cctctggaagagcagtcggtgttcttacacactgagccatttcaccagcc
cttcatccgtgttcttattagggactctgctggtccccacaaacacttga
ggaggcaaggaaggatggcttgtttagctgcagtctgccacaaagcacag
ctttgctgcacgacagtcactctgaccaggatctggagcaccagttttac
tacatcaggtttattttaggttgttagacctgcccaggaacagcaaatgc
acaactctgaggggtcattcaggacaaggaccgtcactcattacagagca
cggaggtttcagacaaaattaatgctggagcaagaaggttctttttagtt
ttcttttcataaaaatgtggatttcaacagaccacataagctttgatctt
ctactgagttaaatgttaaaagggtttctcctggtccttctctgcagaaa
caatgggctcttctgtgtggacagtgaagctccatgtctcctggagagaa
agaacccaagtttcaaagaggtcacctctgaaaggtcaccattctgtaac
cctgtgccaggaggtagaaagggatgagagctaaccaggacgcggtgaga
gctggcaacgttgggcttaggttgtgacacagggcggcactggctgacgt
ccaaggctacgtttcctgatgtggcagctctttataagagagcagcaatg
gagcatctccagtgggcgacagggcagagagactgtactcactcagccca
ccctgaccccatccctgatttcttgtagacagatacatttgggtgaagtt
tgtgggtgggtgtaccctatcactctactggggttctttctggctaagga
gg
caggacagccagggctacacagagaaaccctgtctcgaaaaccccccaaa
aaagggacctagcatgaccgcactccagaagacccaacaagcagctgagt
tagaggcaaatagttgcgcccaaccaatggacagaagcagctgaccccct
gttgttgaattagggaagatggaaagaagttgaggaggaaggccatcctg
taggaggaccagcagtctcaattaatatgggcccccgagatttttcaaac
actggatcaccaaacaggcagcatacaccagctgatatgaggccaccaac
acacatatagcagaagactgtaggtctgtgttcgttcagagatgatgcat
ctaaccctcaagagactagaggccccagggagtttagaggtcaggtggca
tggggagtggggacatccacgtggagacaagggggtggggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_4747592_4748710
seq2: B6Ng01-121E24.b_50_1151 (reverse)

seq1  CCTCCTGTAGCCAGATAGGAACCCCAGTAGAGTGATAGGGGTACCAACCC  50
      |||||| |||||||| | ||||||||||||||||||| ||||||  ||||
seq2  CCTCCT-TAGCCAGA-AAGAACCCCAGTAGAGTGATA-GGGTAC--ACCC  45

seq1  ACCCACAAAACTTTTCACCCAAAATGTATCCTGTCTACAAGAAAATCAGG  100
      |||||||||    ||||||| |||||||| ||||||||||| ||||||||
seq2  ACCCACAAA---CTTCACCC-AAATGTAT-CTGTCTACAAG-AAATCAGG  89

seq1  GATGGGGGTCAGGGTGGGGCTGAGTGGAGTACAGTCTCTTCTGCCCTGTC  150
      ||| ||||||||||| ||||||||| |||||||||||| |||||||||||
seq2  GAT-GGGGTCAGGGT-GGGCTGAGT-GAGTACAGTCTC-TCTGCCCTGTC  135

seq1  GCCCACTGGAGGATGCTCCATTGCCTGCTCTCTTATAAAGAGCCTGCCAC  200
      |||||||||| |||||||||||| |||||||||||||||||| |||||||
seq2  GCCCACTGGA-GATGCTCCATTG-CTGCTCTCTTATAAAGAG-CTGCCAC  182

seq1  ATCAGGAAACGTAGCCTTGGACGTCAGCCAGTGCCGCCCTGTGTCACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAAACGTAGCCTTGGACGTCAGCCAGTGCCGCCCTGTGTCACAAC  232

seq1  CTAAGCCCAACGTTGCCAGCTCTCACCGCGTCCTGGTTAGCTCTCATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCCAACGTTGCCAGCTCTCACCGCGTCCTGGTTAGCTCTCATCCC  282

seq1  TTTCTACCTCCTGGCACAGGGTTACAGAATGGTGACC-TTCAGAGGTGAC  349
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTCTACCTCCTGGCACAGGGTTACAGAATGGTGACCTTTCAGAGGTGAC  332

seq1  CTCTTTGAAACTTGGGTTCTTTCTCTCCAGGAGACATGGAGCTTCACTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGAAACTTGGGTTCTTTCTCTCCAGGAGACATGGAGCTTCACTGT  382

seq1  CCACACAGAAGAGCCCATTGTTTCTGCAGAGAAGGACCAGGAGAAACCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGAAGAGCCCATTGTTTCTGCAGAGAAGGACCAGGAGAAACCCT  432

seq1  TTTAACATTTAACTCAGTAGAAGATCAAAGCTTATGTGGTCTGTTGAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATTTAACTCAGTAGAAGATCAAAGCTTATGTGGTCTGTTGAAAT  482

seq1  CCACATTTTTATGAAAAGAAAACTAAAAAGAACCTTCTTGCTCCAGCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTTTATGAAAAGAAAACTAAAAAGAACCTTCTTGCTCCAGCATT  532

seq1  AATTTTGTCTGAAACCTCCGTGCTCTGTAATGAGTGACGGTCCTTGTCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTCTGAAACCTCCGTGCTCTGTAATGAGTGACGGTCCTTGTCCT  582

seq1  GAATGACCCCTCAGAGTTGTGCATTTGCTGTTCCTGGGCAGGTCTAACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACCCCTCAGAGTTGTGCATTTGCTGTTCCTGGGCAGGTCTAACAA  632

seq1  CCTAAAATAAACCTGATGTAGTAAAACTGGTGCTCCAGATCCTGGTCAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATAAACCTGATGTAGTAAAACTGGTGCTCCAGATCCTGGTCAGA  682

seq1  GTGACTGTCGTGCAGCAAAGCTGTGCTTTGTGGCAGACTGCAGCTAAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGTCGTGCAGCAAAGCTGTGCTTTGTGGCAGACTGCAGCTAAACA  732

seq1  AGCCATCCTTCCTTGCCTCCTCAAGTGTTTGTGGGGACCAGCAGAGTCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCCTTCCTTGCCTCCTCAAGTGTTTGTGGGGACCAGCAGAGTCCC  782

seq1  TAATAAGAACACGGATGAAGGGCTGGTGAAATGGCTCAGTGTGTAAGAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGAACACGGATGAAGGGCTGGTGAAATGGCTCAGTGTGTAAGAAC  832

seq1  ACCGACTGCTCTTCCAGAGGTCCCGAGTTCAAATCCTAGCAACCACATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGACTGCTCTTCCAGAGGTCCCGAGTTCAAATCCTAGCAACCACATGT  882

seq1  GGCTCACAACCACCCATAATGAGATCTGACGCCCCTTCTGGAGTATCTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACAACCACCCATAATGAGATCTGACGCCCCTTCTGGAGTATCTGA  932

seq1  AGGCAGCAACAGTGTACTTGTTTATAATAATAAATAAATCTTTAAAACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCAACAGTGTACTTGTTTATAATAATAAATAAATCTTTAAAACAC  982

seq1  ACACACACAGATGGAACACACATACATGTATCTTTCCCAGGATCTTTTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGATGGAACACACATACATGTATCTTTCCCAGGATCTTTTTC  1032

seq1  TTGTGCCTCATACTGTCCAAGCCTGTTATCTATGCTGCTTTAACACTAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCTCATACTGTCCAAGCCTGTTATCTATGCTGCTTTAACACTAAA  1082

seq1  CCCAGTGTTTCCATGAATTC  1119
      ||||||||||||||||||||
seq2  CCCAGTGTTTCCATGAATTC  1102

seq1: chr2_161115701_161116136
seq2: B6Ng01-121E24.g_65_512 (reverse)

seq1  CTCCTCCCCACCCCCTTG-CTCCCATATCTGAGTTTTCTAATTCACCCTA  49
      |||||||||||||||||| ||||   |  ||  | | |  | || || | 
seq2  CTCCTCCCCACCCCCTTGTCTCC---ACGTGGATGTCCCCACTCCCCATG  47

seq1  TCCCCTCAC---------------AGCAACAAGTTACT---GCATT----  77
       | ||| ||                ||  | |||  ||   |  ||    
seq2  CCACCTGACCTCTAAACTCCCTGGGGCCTCTAGTCTCTTGAGGGTTAGAT  97

seq1  ---TCAAACCTTATCG----CAGACCT------TTCTG-TCCAGTTCTGA  113
         |||   || | ||    |||||||      ||||| |  |  | || 
seq2  GCATCATCTCTGAACGAACACAGACCTACAGTCTTCTGCTATATGTGTGT  147

seq1  TTGACATGGGCATTTATCAGCTGTTAGCAAATTGAACTTCATTGTGTCGG  163
      | |   ||| |   ||||||||| | | |   ||  || |  ||| | | 
seq2  TGG---TGGCCTCATATCAGCTGGT-GTA---TG--CTGC-CTGTTTGGT  187

seq1  GATATAAAGGTGCCAGAGTGAGAAATGGCTTGGGGAAACCTA------GA  207
      |||         |||| ||  ||||   || ||||   | ||      ||
seq2  GAT---------CCAGTGTTTGAAAAATCTCGGGGGCCCATATTAATTGA  228

seq1  GCCTGCAAGTTCAACT-TAGTGTGGCTAT-------AACTT---------  240
      | ||||  || |  ||  ||  ||||  |       |||||         
seq2  GACTGCTGGTCCTCCTACAGGATGGCCTTCCTCCTCAACTTCTTTCCATC  278

seq1  ----CTGATT-------AAGGAATCTGTAGTTTGTGTTGATTTGTTGAG-  278
          || |||       | ||  || |  | || |||  ||| |||| | 
seq2  TTCCCTAATTCAACAACAGGGGGTCAGCTGCTTCTGTCCATTGGTTGGGC  328

seq1  ---GTTCTTT---ACACACTC-GCTGCATTATCTCTTGGTTGTTTATGTG  321
           | |||    |  |||| |||||      | |||| | ||   | |
seq2  GCAACTATTTGCCTCTAACTCAGCTGC-----TTGTTGGGTCTTCTGGAG  373

seq1  TATGGTAGATAGCTAGTTTTCCCTTTTTGGTCCTGAACCTTTGTTTACAT  371
      |  |||  || |||||   ||||||||| |    |               
seq2  TGCGGT-CAT-GCTAG--GTCCCTTTTTTGGGGGG---------------  404

seq1  TATGTTAAAGTTATTTTTTTTTTTCCCAAACATAGTTTCTCTGTGTAGCC  421
                           ||| | | |||  ||||||||||||||||
seq2  ---------------------TTTTCGAGACAGGGTTTCTCTGTGTAGCC  433

seq1  CTGACTGTCCTGGAA  436
      ||| |||||||||||
seq2  CTGGCTGTCCTGGAA  448