BAC Information

Click to search

BAC

Clone NameB6Ng01-121G09
Chromosome2 (Build37)
Map Location 160,438,794 - 160,637,675
singlet/doubletdoublet
Overlap geneTop1, Plcg1, Zhx3
Upstream geneLOC100043689, Gm826, Mafb, LOC100043892
Downstream geneLpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121G09.bB6Ng01-121G09.g
ACCDH925092DH925093
length1,1181,092
definitionDH925092|Mus musculus domesticus DNA, BAC clone: B6Ng01-121G09, 5' end.DH925093|Mus musculus domesticus DNA, BAC clone: B6Ng01-121G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,636,547 - 160,637,675)(160,438,794 - 160,439,907)
sequence
gaattctgtttgctagaagctctgggtgaataacataccaaggctctaag
aaagtctcagtcaagccaggcagtggtggcgcacacctttaatccccaca
cttgggaggcagaggcagaggcaggtggatttctgagttcaaggccagcc
tggtctacagagtgagttccaggacagccaggactacacagagaaacctt
acttcgaaaaagaaagaaagaaagaaagaaagagagagagagagagagag
agagagagagagagagagagagagagagagagaaagagagaaagaaagaa
agaaagtctcagtcagggtctactttgtctctggagttcagttggtgttt
atctagttcttccctacccagttgtgaattgactaatctcttacagaact
aaaagaaaaaattagatcttgaaattaacaaagctgagctagacatactt
agttaggttgatgttttgtgagcactgtgttcagtcctgataatacagag
catgctcatcgtaatcctaccttcatggtgctcacaggcaagaaaactgt
tcctcctaacttgcattagctggctcaggtatctcactcagaagtgcctt
cactaaatcactctgatgtctataaacatatgccttttatttaatactaa
aatcaactagtgttttaacttccttgcagcagtgtggaaaagatattttc
atgtatagttcgatttatgtaattttgagcatgcattttgtccctttgat
cttaaaaccagttcttgtcctgactgttgttcccctcaggctatgatgtt
gaagatattttgttaaaggctttgtgggtttgctcagtgcatatgacaac
caaaaatttgtttactaaggtctaacaaatgtgtttactaaggcagtgtg
gccagctggcagcatccaaagggagccaaatttttctgttgctgtgtgga
catttctctcttcctgatttaatctctgggtcagaattccaagctgtaac
ctcaagcatgaaccactagagtataccatcttactgatcatagcacctat
tagctcttacaaggcccttctatatcagagcttttgaccgtttatctagt
ggggatatctccataact
gaattccccacacttggaaggcagagacaggctgttctcttgagttcaag
gctagcctggtctacaaagtgagttccaggaaagtcagggttacacaggg
aaatcttgtctcaaaaaatacaaaacaaaagacatgctgcttaggaagac
agactctctgcctagactagggttagagctccatcagcaactggatcaag
actcagcccagacaaagtttcttgtggtttcagaggcaacagtcagctgt
ctggatcagggctcagaccatagtagaataggtcagaggtctcagctctg
agaaatactgagcaataccagcaaccgaagtttgggtggcagcagagcta
gcaggtagggagctgagattcagtccccatagaacaagggtagccatgga
gtccacaaagataatcagatttagacactcacccagcccagccagttctg
ccccacccagaatgaatctgctagccagaatcccctttcctttttgttgt
ctgtctcttcctctaggatgatcaagcaagaatcagggacttcatttgtc
ttgtagagcctagcatccctcaagcctggctcagagcaccacaccaccag
catctgttgagtgaaacttcgacaacaactcagtattcacattatccttg
cacaatagagatgggtgggggacttcctcggagtctggggcatcagtttc
aaagaacaattgcaattgttccttctgatgctggaggaagccttggtggg
gtgggcacaggcacctgaatggaactgagagctaaaggtctcagttagag
ggtagaaagtgttggtaccctagctaatggaccggacacctgggccggtc
catttccctttagtcaaaagtaaacagctctgtgaaaggaaggggaggac
ttccatatcaccctttggtaggccaaggacttggttcagaaaacagaaat
atagcagcagcattcagtagaacactggtgccctttctggtctcacttca
ggcttgtttcacacctccagcaggctaagcatagaaggatggagaactaa
ctgactggggcgttctggatcctgagaaagacactggggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_160636547_160637675
seq2: B6Ng01-121G09.b_49_1166 (reverse)

seq1  AGTTATGAGGATATATCTCCACTAGATTAAAACGGTCAAAAGCCTCTGAT  50
      ||||||  ||| ||||| |||||||||  ||||||||||||| |||||||
seq2  AGTTAT--GGAGATATCCCCACTAGAT--AAACGGTCAAAAG-CTCTGAT  45

seq1  ATAGAAGGGCCTTGGTAGAGGCTATTA-GTGCTATGGAATCAGTTAGATG  99
      ||||||||||||||  ||| |||| || ||||||||  |||||| |||||
seq2  ATAGAAGGGCCTTGTAAGA-GCTAATAGGTGCTATG--ATCAGTAAGATG  92

seq1  GTATTACTCTAGTTGGTTCATTGCTTTGAGGTTACAGCTTGGAA-TCTGA  148
      ||| |||||||| ||||||| ||| ||||||||||||||||||| |||||
seq2  GTA-TACTCTAG-TGGTTCA-TGC-TTGAGGTTACAGCTTGGAATTCTGA  138

seq1  CCCAGGAGATTAAATTCAGGAAGAGAGAAATGTCCACACAGCAACAGAAA  198
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCA-GAGATTAAA-TCAGGAAGAGAGAAATGTCCACACAGCAACAGAAA  186

seq1  AATTTGGCTCCCTTTGGATGCTGCCAGCTGGCCACACTGCCTTAGTAAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGCTCCCTTTGGATGCTGCCAGCTGGCCACACTGCCTTAGTAAAC  236

seq1  ACATTTGTTAGACCTTAGTAAACAAATTTTTGGTTGTCATATGCACTGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTTAGACCTTAGTAAACAAATTTTTGGTTGTCATATGCACTGAG  286

seq1  CAAACCCACAAAGCC-TTAACAAAATATCTTCAACATCATAGCCTGAGGG  347
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAAACCCACAAAGCCTTTAACAAAATATCTTCAACATCATAGCCTGAGGG  336

seq1  GAACAACAGTCAGGACAAGAACTGGTTTTAAGATCAAAGGGACAAAATGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAGTCAGGACAAGAACTGGTTTTAAGATCAAAGGGACAAAATGC  386

seq1  ATGCTCAAAATTACATAAATCGAACTATACATGAAAATATCTTTTCCACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAAAATTACATAAATCGAACTATACATGAAAATATCTTTTCCACA  436

seq1  CTGCTGCAAGGAAGTTAAAACACTAGTTGATTTTAGTATTAAATAAAAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCAAGGAAGTTAAAACACTAGTTGATTTTAGTATTAAATAAAAGG  486

seq1  CATATGTTTATAGACATCAGAGTGATTTAGTGAAGGCACTTCTGAGTGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTTATAGACATCAGAGTGATTTAGTGAAGGCACTTCTGAGTGAG  536

seq1  ATACCTGAGCCAGCTAATGCAAGTTAGGAGGAACAGTTTTCTTGCCTGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGAGCCAGCTAATGCAAGTTAGGAGGAACAGTTTTCTTGCCTGTG  586

seq1  AGCACCATGAAGGTAGGATTACGATGAGCATGCTCTGTATTATCAGGACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCATGAAGGTAGGATTACGATGAGCATGCTCTGTATTATCAGGACT  636

seq1  GAACACAGTGCTCACAAAACATCAACCTAACTAAGTATGTCTAGCTCAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGTGCTCACAAAACATCAACCTAACTAAGTATGTCTAGCTCAGC  686

seq1  TTTGTTAATTTCAAGATCTAATTTTTTCTTTTAGTTCTGTAAGAGATTAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAATTTCAAGATCTAATTTTTTCTTTTAGTTCTGTAAGAGATTAG  736

seq1  TCAATTCACAACTGGGTAGGGAAGAACTAGATAAACACCAACTGAACTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCACAACTGGGTAGGGAAGAACTAGATAAACACCAACTGAACTCC  786

seq1  AGAGACAAAGTAGACCCTGACTGAGACTTTCTTTCTTTCTTTCTCTCTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAAAGTAGACCCTGACTGAGACTTTCTTTCTTTCTTTCTCTCTTT  836

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  886

seq1  CTTTCTTTCTTTCTTTCTTTCTTTTTCGAAGTAAGGTTTCTCTGTGTAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTTTCGAAGTAAGGTTTCTCTGTGTAGT  936

seq1  CCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAG  986

seq1  AAATCCACCTGCCTCTGCCTCTGCCTCCCAAGTGTGGGGATTAAAGGTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCACCTGCCTCTGCCTCTGCCTCCCAAGTGTGGGGATTAAAGGTGT  1036

seq1  GCGCCACCACTGCCTGGCTTGACTGAGACTTTCTTAGAGCCTTGGTATGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCACCACTGCCTGGCTTGACTGAGACTTTCTTAGAGCCTTGGTATGT  1086

seq1  TATTCACCCAGAGCTTCTAGCAAACAGAATTC  1129
      ||||||||||||||||||||||||||||||||
seq2  TATTCACCCAGAGCTTCTAGCAAACAGAATTC  1118

seq1: chr2_160438794_160439907
seq2: B6Ng01-121G09.g_66_1157

seq1  GAATTCCCCACACTTGGAAGGCAGAGACAGGCTGTTCTCTTGAGTTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCACACTTGGAAGGCAGAGACAGGCTGTTCTCTTGAGTTCAAG  50

seq1  GCTAGCCTGGTCTACAAAGTGAGTTCCAGGAAAGTCAGGGTTACACAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCTGGTCTACAAAGTGAGTTCCAGGAAAGTCAGGGTTACACAGGG  100

seq1  AAATCTTGTCTCAAAAAATACAAAACAAAAGACATGCTGCTTAGGAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGTCTCAAAAAATACAAAACAAAAGACATGCTGCTTAGGAAGAC  150

seq1  AGACTCTCTGCCTAGACTAGGGTTAGAGCTCCATCAGCAACTGGATCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTCTGCCTAGACTAGGGTTAGAGCTCCATCAGCAACTGGATCAAG  200

seq1  ACTCAGCCCAGACAAAGTTTCTTGTGGTTTCAGAGGCAACAGTCAGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCCCAGACAAAGTTTCTTGTGGTTTCAGAGGCAACAGTCAGCTGT  250

seq1  CTGGATCAGGGCTCAGACCATAGTAGAATAGGTCAGAGGTCTCAGCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCAGGGCTCAGACCATAGTAGAATAGGTCAGAGGTCTCAGCTCTG  300

seq1  AGAAATACTGAGCAATACCAGCAACCGAAGTTTGGGTGGCAGCAGAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACTGAGCAATACCAGCAACCGAAGTTTGGGTGGCAGCAGAGCTA  350

seq1  GCAGGTAGGGAGCTGAGATTCAGTCCCCATAGAACAAGGGTAGCCATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTAGGGAGCTGAGATTCAGTCCCCATAGAACAAGGGTAGCCATGGA  400

seq1  GTCCACAAAGATAATCAGATTTAGACACTCACCCAGCCCAGCCAGTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAAAGATAATCAGATTTAGACACTCACCCAGCCCAGCCAGTTCTG  450

seq1  CCCCACCCAGAATGAATCTGCTAGCCAGAATCCCCTTTCCTTTTTGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCAGAATGAATCTGCTAGCCAGAATCCCCTTTCCTTTTTGTTGT  500

seq1  CTGTCTCTTCCTCTAGGATGATCAAGCAAGAATCAGGGACTTCATTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTTCCTCTAGGATGATCAAGCAAGAATCAGGGACTTCATTTGTC  550

seq1  TTGTAGAGCCTAGCATCCCTCAAGCCTGGCTCAGAGCACCACACCACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAGCCTAGCATCCCTCAAGCCTGGCTCAGAGCACCACACCACCAG  600

seq1  CATCTGTTGAGTGAAACTTCGACAACAACTCAGTATTCACATTATCCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTGAGTGAAACTTCGACAACAACTCAGTATTCACATTATCCTTG  650

seq1  CACAATAGAGATGGGTGGGGGACTTCCTCGGAGTCTGGGGCATCAGTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAGAGATGGGTGGGGGACTTCCTCGGAGTCTGGGGCATCAGTTTC  700

seq1  AAAGAACAATTGCAATTGTTCCTTCTGATGCTGGAGGAAGCCTTGGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAATTGCAATTGTTCCTTCTGATGCTGGAGGAAGCCTTGGTGGG  750

seq1  GTGGGCACAGGCACCTGAATGGAACTGAGAGCTAAAGGTCTCAGTTAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCACAGGCACCTGAATGGAACTGAGAGCTAAAGGTCTCAGTTAGAG  800

seq1  GGTAGAAAGTGTTGGTACCCTAGCTAATGGACCGGACACCTGGGCCGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAAGTGTTGGTACCCTAGCTAATGGACCGGACACCTGGGCCGGTC  850

seq1  CATTTCCCTTTAGTCAAAAGTAAACAGCTCTGTGAAAGGAAGGGGAGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCTTTAGTCAAAAGTAAACAGCTCTGTGAAAGGAAGGGGAGGAC  900

seq1  TTCCATATCACCCTTTGGTAGGCCCAAGGACCTGGTTCCAGAAAACAGGA  950
      |||||||||||||||||||||| |||||||| ||||| ||||||||| ||
seq2  TTCCATATCACCCTTTGGTAGG-CCAAGGACTTGGTT-CAGAAAACA-GA  947

seq1  AATATAAGCCAGCAGCAATTCAGTAGGAACCAACTTGGGTTGCCCTTTCT  1000
      ||||||   ||||||| |||||||| ||||  |||   | ||||||||||
seq2  AATATA--GCAGCAGC-ATTCAGTA-GAAC--ACT---GGTGCCCTTTCT  988

seq1  GGTCTTCACCTCCAGGCATGGTTCCAACCACCTCCAGCAAGCCTAGGCAA  1050
      |||| ||| || ||||| || |||    |||||||||| || ||| || |
seq2  GGTC-TCA-CTTCAGGCTTGTTTC---ACACCTCCAGC-AGGCTAAGC-A  1031

seq1  TAG-ATGATGGAGAACTAACCTGACCTGGGGCGTTCTGGGATCCTGAGAA  1099
      ||| | ||||||||||||| |||| |||||||||||| ||||||||||||
seq2  TAGAAGGATGGAGAACTAA-CTGA-CTGGGGCGTTCT-GGATCCTGAGAA  1078

seq1  AGACACTTGGGGAAG  1114
      |||||| ||||||||
seq2  AGACAC-TGGGGAAG  1092