BAC Information

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BAC

Clone NameB6Ng01-121N07
Chromosome4 (Build37)2 (Build37)
Map Location 61,472,325 - 61,473,490134,440,310 - 134,440,811
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234, LOC100039089, LOC667239, LOC100039116, LOC667242, LOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278
Downstream geneMup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121N07.bB6Ng01-121N07.g
ACCDH925414DH925415
length1,158978
definitionDH925414|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N07, 5' end.DH925415|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,472,325 - 61,473,490)(134,440,310 - 134,440,811)
sequence
gaattcttggaatttctgttagtagattagctgaactatatagtctgtaa
gccattttaataaacaattcacatacacgctgtaaggtttactcttctag
agaaccccacctaacacaataccacagaggaatttacatttgatttggaa
tgggtaagaagtaatgaagttatttgaaaaggaactggaatacaaaaaat
gtgtgatgccacataagctgagacaaactgtctaacaaaagaggaacaag
aacaggttcctatagagaaagagctcagattatctaaagtaacttcagta
gaagagtctaagtttggagacatgggtctagcccgctggcagtgagtggt
gggtgaccaggttaccgtgacaccataggttcaatccttagcacttgaag
aacaaaacaatatgactcacagattaaaggactagtatccatggcttttc
attggaaggttagcttgaaacatttgtaatgaaagatgagattaatcttt
taaagtagattaacaatagattctttggagttggagttacagatggttgt
gagccaccatgtgggtgcgataaaccaaacctaagtcctcggaaggaaca
gcctgtgcttttaactgatgatgcatctctccagtcccctgatttgttat
ttatatttatttgctatttatacgtttttagatttatttcatgtgtataa
gtgttttggctgcatgtatgtctgttcatcacatatatgattcatgcctg
aggaggccagaataaggtgtcagatattctgaaactggaggtttagacag
ttgtgatctatcatgtgtatgctggaaactgaattcaggtcgtatgtgag
ggcatcaagtgctcttaacactgagctatctctccagacgcaatttttct
atttttaaaatggactataatgagcacatgttctgtgcttatagctcttc
agctactggctttcaaatatacatataaatgtaatatgtatacacagagc
attaaccctatcagcacaatcaaaggaggccccagcagtttggctgtaga
gacagtgccacactcagcttggcagtagaggccatcggccttagctgcac
ttgcctggaatgctcaatcaatttcttagctccacaagtccaggatctac
ctgtggtt
gaattccaagcccatggtcagctcaaggactttctaggatgttggaacag
tggcgaaggcttggctatatcagaattcaatcttaaagtcgtatatatta
aaataagactaaaagagagcatgtggatccatacaccagactaattcgac
gatggggtatgagtatacaggttatgagaatgccaaagttccaggagctg
agtttctgtgaaactctctgcctcgtgagtgctcccaggcctctcgttct
gccaagcaaacttcactggattgtgcttagcatgtagtctgtctattagt
ctatgtctttttattggggaattgagtccattgatgttaagagaaattga
aaagtaatttttgcttccttttatttttgttgttaaatttggggttttgt
tcttctggctgtcttaggtttgttgaaggattactttcttgcttttctag
ggtatagtttccatcttttgttgatgtttttcctttattatcctttgaag
gtctggattcatggaaagatattgtgtgaatttagttttatcatggaata
ctttggtttttccatctacggtaattgagagttttgctgggtaccgtagc
ctgggctggcatttgtgttctcttaggttctgcataacatctgtccaggc
tcttctggctttcatagtctctggtgagaagtctggtgaaattctaatag
gcctacctttatatgttacttgactgcttccccttactgcttttaatatt
ctatctttatttagtgcatttgttgttctgattaaaatatttcgggagga
atttctttactggttctgtctatttggagttctgtaggcttcttgtatgg
ttatgggcacctctttctttaggtttgggagtttcttcatatttgtgaag
atatttgctggccttttaagtgaatatcttcatctcatctactcctatta
tctgtaagtttggtcttctcattgtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_61472325_61473490
seq2: B6Ng01-121N07.b_49_1206 (reverse)

seq1  AACCACA-GTAGACACCTGGACTTTGTTGAAGCTTAAGAAATTGGTTGAG  49
      ||||||| |||||  |||||||||   || ||| |||||||||| |||||
seq2  AACCACAGGTAGA-TCCTGGACTT--GTGGAGC-TAAGAAATTGATTGAG  46

seq1  CACTCACAGTGCAAGTGCAGCTAGGGCACGATTGCCCTCTACTGGCCAAG  99
      || || ||| ||||||||||||| ||| ||| || |||||||| ||||||
seq2  CATTC-CAG-GCAAGTGCAGCTAAGGC-CGA-TGGCCTCTACT-GCCAAG  91

seq1  CTGAGTGTGGCACTGTCTCCTACAGCCAAACTGCTGGGGCTTCCTTTGTT  149
      |||||||||||||||||| ||||||||||||||||||||| ||||||| |
seq2  CTGAGTGTGGCACTGTCT-CTACAGCCAAACTGCTGGGGCCTCCTTTGAT  140

seq1  TGTGCCTGTTA-GGTTTATGCTCTGTGTATACATATTACATTTATATGTA  198
      |||| ||| || |||| |||||||||||||||||||||||||||||||||
seq2  TGTG-CTGATAGGGTTAATGCTCTGTGTATACATATTACATTTATATGTA  189

seq1  TATTTTGAAGCCAGTAGCTGAAGAGCTAT-AGCACAGAACATGTGCTCAT  247
      |||||  |||||||||||||||||||||| ||||||||||||||||||||
seq2  TATTTGAAAGCCAGTAGCTGAAGAGCTATAAGCACAGAACATGTGCTCAT  239

seq1  TATAGTCCCTTTTAAAAATAGAAAAATTGCGTCTGGAGAGATAGCTCAGT  297
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCCATTTTAAAAATAGAAAAATTGCGTCTGGAGAGATAGCTCAGT  289

seq1  GTTAAGAGCACTTGATGCCCTCACATACGACCTGAATTCAGTTTCCAGCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGCACTTGATGCCCTCACATACGACCTGAATTCAGTTTCCAGCA  339

seq1  TACACATGATAGATCACAACTGTCTAAACCTCCAGTTTCAGAATATCTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGATAGATCACAACTGTCTAAACCTCCAGTTTCAGAATATCTGA  389

seq1  CACCTTATTCTGGCCTCCTCAGGCATGAATCATATATGTGATGAACAGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTATTCTGGCCTCCTCAGGCATGAATCATATATGTGATGAACAGAC  439

seq1  ATACATGCAGCCAAAACACTTATACACATGAAATAAATCTAAAAACGTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCAGCCAAAACACTTATACACATGAAATAAATCTAAAAACGTAT  489

seq1  AAATAGCAAATAAATATAAATAACAAATCAGGGGACTGGAGAGATGCATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAAATAAATATAAATAACAAATCAGGGGACTGGAGAGATGCATC  539

seq1  ATCAGTTAAAAGCACAGGCTGTTCCTTCCGAGGACTTAGGTTTGGTTTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTAAAAGCACAGGCTGTTCCTTCCGAGGACTTAGGTTTGGTTTAT  589

seq1  CGCACCCACATGGTGGCTCACAACCATCTGTAACTCCAACTCCAAAGAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCCACATGGTGGCTCACAACCATCTGTAACTCCAACTCCAAAGAAT  639

seq1  CTATTGTTAATCTACTTTAAAAGATTAATCTCATCTTTCATTACAAATGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTTAATCTACTTTAAAAGATTAATCTCATCTTTCATTACAAATGT  689

seq1  TTCAAGCTAACCTTCCAATGAAAAGCCATGGATACTAGTCCTTTAATCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCTAACCTTCCAATGAAAAGCCATGGATACTAGTCCTTTAATCTG  739

seq1  TGAGTCATATTGTTTTGTTCTTCAAGTGCTAAGGATTGAACCTATGGTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCATATTGTTTTGTTCTTCAAGTGCTAAGGATTGAACCTATGGTGT  789

seq1  CACGGTAACCTGGTCACCCACCACTCACTGCCAGCGGGCTAGACCCATGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTAACCTGGTCACCCACCACTCACTGCCAGCGGGCTAGACCCATGT  839

seq1  CTCCAAACTTAGACTCTTCTACTGAAGTTACTTTAGATAATCTGAGCTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAACTTAGACTCTTCTACTGAAGTTACTTTAGATAATCTGAGCTCT  889

seq1  TTCTCTATAGGAACCTGTTCTTGTTCCTCTTTTGTTAGACAGTTTGTCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATAGGAACCTGTTCTTGTTCCTCTTTTGTTAGACAGTTTGTCTC  939

seq1  AGCTTATGTGGCATCACACATTTTTTGTATTCCAGTTCCTTTTCAAATAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATGTGGCATCACACATTTTTTGTATTCCAGTTCCTTTTCAAATAA  989

seq1  CTTCATTACTTCTTACCCATTCCAAATCAAATGTAAATTCCTCTGTGGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTACTTCTTACCCATTCCAAATCAAATGTAAATTCCTCTGTGGTA  1039

seq1  TTGTGTTAGGTGGGGTTCTCTAGAAGAGTAAACCTTACAGCGTGTATGTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTAGGTGGGGTTCTCTAGAAGAGTAAACCTTACAGCGTGTATGTG  1089

seq1  AATTGTTTATTAAAATGGCTTACAGACTATATAGTTCAGCTAATCTACTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTATTAAAATGGCTTACAGACTATATAGTTCAGCTAATCTACTA  1139

seq1  ACAGAAATTCCAAGAATTC  1166
      |||||||||||||||||||
seq2  ACAGAAATTCCAAGAATTC  1158

seq1: chr2_134440310_134440811
seq2: B6Ng01-121N07.g_552_1045 (reverse)

seq1  GACACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGA  50
      ||||||||||||||||||||| ||| |||||||||||| |||||| ||||
seq2  GACACAATGAGAAGACCAAACTTACAGATAATAGGAGTAGATGAG-ATGA  49

seq1  AGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAG  100
      |||| ||| ||||||| ||||||| ||||||||||  || ||    ||||
seq2  AGATATTC-ACTTAAAAGGCCAGCAAATATCTTCACAAATAT----GAAG  94

seq1  AAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCC  150
      |||   |||||||| |||| |||||| ||||||| | |||||||||||||
seq2  AAA--CTCCCAAACCTAAAGAAAGAGGTGCCCATAACCATACAAGAAGCC  142

seq1  TACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACAT  200
      ||||||||||||||||||| | ||||| ||||||||||||||||| | ||
seq2  TACAGAACTCCAAATAGACAGAACCAGTAAAGAAATTCCTCCCGAAATAT  192

seq1  AATAATCAGAACAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAG  250
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCAGAACAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAG  242

seq1  TAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACA  300
      ||||||  |   ||||||||||||||||||| |||||||| |||||| ||
seq2  TAAGGGGAAGCAGTCAAGTAACATATAAAGGTAGGCCTATTAGAATTTCA  292

seq1  CCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGT  350
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTTCTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGT  342

seq1  TATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGG  400
      ||| ||||  |||||||||||||||||||||||||||||||  ||||| |
seq2  TATGCAGAACCTAAGAGAACACAAATGCCAGCCCAGGCTACGGTACCCAG  392

seq1  CCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAA  450
      | ||||||||||||||| |||||||| |||||||||||||||| || |||
seq2  CAAAACTCTCAATTACCGTAGATGGAAAAACCAAAGTATTCCATGATAAA  442

seq1  AACAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAAT  500
      |  |||||||||||||||||||||| |||||||| |||||||||||||||
seq2  ACTAAATTCACACAATATCTTTCCATGAATCCAGACCTTCAAAGGATAAT  492

seq1  AA  502
      ||
seq2  AA  494