BAC Information

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BAC

Clone NameB6Ng01-121N20
Chromosome2 (Build37)1 (Build37)
Map Location 142,776,571 - 142,777,089101,901,593 - 101,902,744
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121N20.bB6Ng01-121N20.g
ACCDH925438DH925439
length6751,134
definitionDH925438|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N20, 5' end.DH925439|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,571 - 142,777,089)(101,901,593 - 101,902,744)
sequence
gaattctccacaaaacccatctggtcctgggatttttttggttgggagac
tttatttgttgggtttcttttgtttgtttgtttgtttgtttgtttggttt
tttttggtttttttttttttttttggtttttcccaaattttggttttggt
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccaataccatgcagtgttatcacaatttgc
tctgtaataaagctttaggttctgggcatgggtgatttccgccagaagtt
tcttttattcctttgagaagacttt
gaattcttgtaggaagtagagtccctggttggaaggatcatcattctagt
ttaacaagcccagtctgaagagaaacttttgatcatgacaaactcagttt
gtcttcttgtgttacactcttgaaacaaacaagtgacagagttctatatt
gaaatggcatgggactgcttactattctttccccagtgcttagagtttgg
ggatcaccaggtaagttattactataattatacaaatgaatgaataagaa
tttcttgttctcccaaaaatttaatcttgtataaattgaagtgatccttc
caacaactaagccaaactttccatcaaaatatacttagaaaacaaataga
tacgattgaaactggccatgatatttcaaaactcagagttttgaaatctc
ctggggtttctcttgggttatccatgtgtggggaccacaacaatgtaagc
ctctgaactgttattccatgtaagccatgatttttttcaatgttgaacta
aaatacattgccttacaaccatttaaatagcaactaaactaaatattggt
attaaaaacaataaggtgtaattgtgaggatggtctctgtgaaaatctat
gaatcctttataaccaagcacattggcaggtttatgttatcagtgagaaa
ctacagctcactctcaggcatgtatcagtgtaaagactatatgcacattt
tgtgtaatttttcttttagtgagatttatttaattttaatcttattattc
aatcttaaattggtgacatttttcagtatcttttgttttctctcactaaa
cttgttttaatgtgtctcaagattctgtgacagatttttggtcaagttgt
ttccattcaaaagtactgtttttgtaaactaataatttaaaactgacaca
ccacccacacacacacaacacacacacatacacacacacacacacacaca
aatggtcacaaaacatcttcctactgagttttatatgccactgttatcaa
gaagtcagcacctacataagaaattggctacaaccttatcacaggtatct
ttgggcaattctgggtgaatggtgacatgctggacaatctcaaatgcctt
ggttcaagggatgaagttaccagcatggagtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776571_142777089
seq2: B6Ng01-121N20.b_197_722 (reverse)

seq1  AAAGTCTTCTCAA--GGATAAAAG-AACCTCTGGTGG-AATCA-CCATGC  45
      |||||||||||||  | ||||||| ||| ||||| || ||||| ||||||
seq2  AAAGTCTTCTCAAAGGAATAAAAGAAACTTCTGGCGGAAATCACCCATGC  50

seq1  C--TGACCTAAAGCTTTACTACAGAGC-AATTGTGATAAAAACTGCATGG  92
      |    ||||||||||||| |||||||| ||||||||| || |||||||||
seq2  CCAGAACCTAAAGCTTTATTACAGAGCAAATTGTGAT-AACACTGCATGG  99

seq1  TACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCC  142
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGATCC  149

seq1  AGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTA  199

seq1  AAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCAC  242
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCAC  249

seq1  AACTGGTTGTTATCATGTAGAAGAATGGGAATCGATCCATACTTATCTCC  292
      |||||||||||||| |||||||||||| |||| |||||||||||||||||
seq2  AACTGGTTGTTATCGTGTAGAAGAATGCGAATTGATCCATACTTATCTCC  299

seq1  TTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAG  349

seq1  AGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATG  399

seq1  GGCACAGGGGACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAG  442
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAG  449

seq1  ATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGG  492
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGG  499

seq1  CAAAAGACACCGTCAATAAGACAAAAA  519
      |||||||||||||||||||||||||||
seq2  CAAAAGACACCGTCAATAAGACAAAAA  526

seq1: chr1_101901593_101902744
seq2: B6Ng01-121N20.g_67_1200

seq1  GAATTCTTGTAGGAAGTAGAGTCCCTGGTTGGAAGGATCATCATTCTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTAGGAAGTAGAGTCCCTGGTTGGAAGGATCATCATTCTAGT  50

seq1  TTAACAAGCCCAGTCTGAAGAGAAACTTTTGATCATGACAAACTCAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAGCCCAGTCTGAAGAGAAACTTTTGATCATGACAAACTCAGTTT  100

seq1  GTCTTCTTGTGTTACACTCTTGAAACAAACAAGTGACAGAGTTCTATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTGTGTTACACTCTTGAAACAAACAAGTGACAGAGTTCTATATT  150

seq1  GAAATGGCATGGGACTGCTTACTATTCTTTCCCCAGTGCTTAGAGTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCATGGGACTGCTTACTATTCTTTCCCCAGTGCTTAGAGTTTGG  200

seq1  GGATCACCAGGTAAGTTATTACTATAATTATACAAATGAATGAATAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACCAGGTAAGTTATTACTATAATTATACAAATGAATGAATAAGAA  250

seq1  TTTCTTGTTCTCCCAAAAATTTAATCTTGTATAAATTGAAGTGATCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTCTCCCAAAAATTTAATCTTGTATAAATTGAAGTGATCCTTC  300

seq1  CAACAACTAAGCCAAACTTTCCATCAAAATATACTTAGAAAACAAATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACTAAGCCAAACTTTCCATCAAAATATACTTAGAAAACAAATAGA  350

seq1  TACGATTGAAACTGGCCATGATATTTCAAAACTCAGAGTTTTGAAATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATTGAAACTGGCCATGATATTTCAAAACTCAGAGTTTTGAAATCTC  400

seq1  CTGGGGTTTCTCTTGGGTTATCCATGTGTGGGGACCACAACAATGTAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTTTCTCTTGGGTTATCCATGTGTGGGGACCACAACAATGTAAGC  450

seq1  CTCTGAACTGTTATTCCATGTAAGCCATGATTTTTTTCAATGTTGAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACTGTTATTCCATGTAAGCCATGATTTTTTTCAATGTTGAACTA  500

seq1  AAATACATTGCCTTACAACCATTTAAATAGCAACTAAACTAAATATTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTGCCTTACAACCATTTAAATAGCAACTAAACTAAATATTGGT  550

seq1  ATTAAAAACAATAAGGTGTAATTGTGAGGATGGTCTCTGTGAAAATCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACAATAAGGTGTAATTGTGAGGATGGTCTCTGTGAAAATCTAT  600

seq1  GAATCCTTTATAACCAAGCACATTGGCAGGTTTATGTTATCAGTGAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTTTATAACCAAGCACATTGGCAGGTTTATGTTATCAGTGAGAAA  650

seq1  CTACAGCTCACTCTCAGGCATGTATCAGTGTAAAGACTATATGCACATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCTCACTCTCAGGCATGTATCAGTGTAAAGACTATATGCACATTT  700

seq1  TGTGTAATTTTTCTTTTAGTGAGATTTATTTAATTTTAATCTTATTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAATTTTTCTTTTAGTGAGATTTATTTAATTTTAATCTTATTATTC  750

seq1  AATCTTAAATTGGTGACATTTTTCAGTATCTTTTGTTTTCTCTCACTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAATTGGTGACATTTTTCAGTATCTTTTGTTTTCTCTCACTAAA  800

seq1  CTTGTTTTAATGTGTCTCAAGATTCTGTGACAGATTTTTGGTCAAGTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTAATGTGTCTCAAGATTCTGTGACAGATTTTTGGTCAAGTTGT  850

seq1  TTCCATTCAAAAGTACTGTTTTTGTAAACTAATAATTTAAAACTGACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCAAAAGTACTGTTTTTGTAAACTAATAATTTAAAACTGACACA  900

seq1  CCCACCCACACACACACACACACACACACACACACACACACACACACACA  950
       ||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  -CCACCCACACACACACA-ACACACACACATACACACACACACACACACA  948

seq1  CAAATGGTTCACAAAACATTCTTTCCTACTGAAGGTTTTATAATGCACTG  1000
      ||||||| |||||||||||   ||||||||||  ||||||||   |||||
seq2  CAAATGG-TCACAAAACAT--CTTCCTACTGA--GTTTTATATGCCACTG  993

seq1  TTATCAAAGAAGTCAGCACCTACATTAAGAAAATTGGCTACAACCTTATC  1050
      ||||| |||||||||||||||||| |||| ||||||||||||||||||||
seq2  TTATC-AAGAAGTCAGCACCTACA-TAAG-AAATTGGCTACAACCTTATC  1040

seq1  ACA-GTATCCTTTGTGCCAATTTCTGGTTGGAATGGTGACATGCTAGAGC  1099
      ||| |||| ||||| ||  | |||||| | ||||||||||||||| ||  
seq2  ACAGGTAT-CTTTGGGC--AATTCTGGGT-GAATGGTGACATGCTGGA--  1084

seq1  CAAGTGCTAATATGCCTTGGTTCAAGGGATGGAAAGTCACCAGCATGGA-  1148
      |||   || | ||||||||||||||||||||  |||| ||||||||||| 
seq2  CAA--TCTCAAATGCCTTGGTTCAAGGGATG--AAGTTACCAGCATGGAG  1130

seq1  TGAC  1152
      ||||
seq2  TGAC  1134