BAC Information

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BAC

Clone NameB6Ng01-122I06
Chromosome2 (Build37)
Map Location 163,231,076 - 163,356,116
singlet/doubletdoublet
Overlap gene3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2
Downstream geneHnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122I06.bB6Ng01-122I06.g
ACCDH925919DH925920
length1,1601,178
definitionDH925919|Mus musculus domesticus DNA, BAC clone: B6Ng01-122I06, 5' end.DH925920|Mus musculus domesticus DNA, BAC clone: B6Ng01-122I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,231,076 - 163,232,244)(163,354,952 - 163,356,116)
sequence
gaattcacccttccagttaaaagtgagcttgagccatttaaccaaacttc
gaagaggactttataacgactcaccataagtgtatcaggtatgaaatcct
ccagagattctagggtagggggtaacgtctaaaacatattgaggggcata
agacctatattgtgctaggcagtggtggcgcacgcctttaatctcagcac
ttgggaggcagaggcagaggccgaggcaggcagatttcgaggccagcctg
gtctacagaatgagttccaggacagccagggctacacagagaaaccttgt
ctcaaaaaccaaaggggggaaaaaaagacctatattgcaactgaccacaa
acaaaacatcacacacataaacaccagagatggaggcaacacaacacact
gatttcagtacaacacacactcatacataccaagtgcttagcagtcccac
tttaaacagcttaagaaacaacacacaatacctctggataaacagcacca
gcaggggtttatttagtgacagtaaggttaatgactccctcaaaacaaaa
taggacaggccacctgaatctaaaccttagatatctgactcaacagtaac
gtaagaaacctttaatgacacaaacccgtgttaaaccaaagacagtttaa
atgagtctcataagctctactattgatgggctggcatctacagcatgaca
agtgttcaattcagttacaaatgcacatttgagtttcttgctgccacatc
gtaagcaggtctgaaatatgctgtcttataaggatgtctccatgtcccca
ccgccgccagtctccaagtcattatggtttcttcagccctcagaacattt
ttaggagattttctttgacctgcttgcctttgacaggtacataagaaccc
agtaaactgacagaatgagattaactgagatgccaagaatagtttttatt
tgcaagcagtgagcagaaagagatgtcttctcacagagtggccaccgggt
ctgccgttactaaactctgataacctttcattgtttaaagcacatgaact
agccttttgttatcagtgtacatcatctctgcaattgggaacattttctt
agggaaatacaagtatactccatggtagctgctaggtcctcatgtcattc
atcacataga
gaattcactgttagcctagcagtggttaccagtgaacacgcctttaatcc
cagcacttgagaggaaaaaacagggggacctctgagttcgaggctagtta
gggacagccagtgctacagagagaaaccttgtcttaaaaaaataaaacaa
aacaaagtaaaacaacaaaaacaaaaaaggaatttgctggttccaatgat
ccaaaagagcaagccggaatcaagagctgggacaaaaacttggacccaga
gtaaagaccttgctatgtgctatgattgtcctaccagggacaatcctgat
ggatccaaatgttagcttcttgtcactgggggtcttggacacaagcctgg
gaaccatgatgccaaggaagatgggttgtggattccagaagcaaattctt
ccagaaagcaaatatctcaaatgaaatacaaccaaactccagcgcattgg
gggaactgggtctccacgcgtaaaaggatgaggttgacgagctggacgta
gtggtgcgtttggaagggaagaaagagcagaggttcaagatcattccagg
acacagggagttccttagttgagccaagagagctttgtagtgcatgtgga
catctcaccgtttcagaatttcagaccaggatgcactagaaatgaccagt
cctaataaagattacctcagtctgcatttagctcccaccatgacacccgt
caaagaccacaggggaggcaggcacgagggtgttcttcactctaggaggt
ctttccccttttcttaacagatgtatggtcgttctactctctccttgtct
acattttcttgttcttctgagacaatgagccccgggtgccactgggctca
ggacagcttgggcaacaaaagtcatccagcaccctaggtacctgggtgcg
aagtttttgcatgtgcttcagtccagggagtgggcacttttaggaggttg
tgccctgttggagtagggtgtgtccactgtgggttgtgggctttaaggac
cctcatcctagctgcctggaagtcagtattctgctgcagccttcaagtga
agatgtagaactcccagtactcctggacccttgtcgcctaacactggcca
gtgttcccacttgatgataatggtactggaaccttcgaacctggttagcc
agccccaatttaatgttgtgtcctttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_163231076_163232244
seq2: B6Ng01-122I06.b_48_1207

seq1  GAATTCACCCTTCCAGTTAAAAGTGAGCTTGAGCCATTTAACCAAACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTTCCAGTTAAAAGTGAGCTTGAGCCATTTAACCAAACTTC  50

seq1  GAAGAGGACTTTATAACGACTCACCATAAGTGTATCAGGTATGAAATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGACTTTATAACGACTCACCATAAGTGTATCAGGTATGAAATCCT  100

seq1  CCAGAGATTCTAGGGTAGGGGGTAACGTCTAAAACATATTGAGGGGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATTCTAGGGTAGGGGGTAACGTCTAAAACATATTGAGGGGCATA  150

seq1  AGACCTATATTGTGCTAGGCAGTGGTGGCGCACGCCTTTAATCTCAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTATATTGTGCTAGGCAGTGGTGGCGCACGCCTTTAATCTCAGCAC  200

seq1  TTGGGAGGCAGAGGCAGAGGCCGAGGCAGGCAGATTTCGAGGCCAGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGCAGAGGCAGAGGCCGAGGCAGGCAGATTTCGAGGCCAGCCTG  250

seq1  GTCTACAGAATGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAATGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCTTGT  300

seq1  CTCAAAAACCAAAGGGGGGAAAAAAAGACCTATATTGCAACTGACCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAACCAAAGGGGGGAAAAAAAGACCTATATTGCAACTGACCACAA  350

seq1  ACAAAACATCACACACATAAACACCAGAGATGGAGGCAACACAACACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACATCACACACATAAACACCAGAGATGGAGGCAACACAACACACT  400

seq1  GATTTCAGTACAACACACACTCATACATACCAAGTGCTTAGCAGTCCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGTACAACACACACTCATACATACCAAGTGCTTAGCAGTCCCAC  450

seq1  TTTAAACAGCTTAAGAAACAACACACAATACCTCTGGATAAACAGCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAGCTTAAGAAACAACACACAATACCTCTGGATAAACAGCACCA  500

seq1  GCAGGGGTTTATTTAGTGACAGTAAGGTTAATGACTCCCTCAAAACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGTTTATTTAGTGACAGTAAGGTTAATGACTCCCTCAAAACAAAA  550

seq1  TAGGACAGGCCACCTGAATCTAAACCTTAGATATCTGACTCAACAGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGGCCACCTGAATCTAAACCTTAGATATCTGACTCAACAGTAAC  600

seq1  GTAAGAAACCTTTAATGACACAAACCCGTGTTAAACCAAAGACAGTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAACCTTTAATGACACAAACCCGTGTTAAACCAAAGACAGTTTAA  650

seq1  ATGAGTCTCATAAGCTCTACTATTGATGGGCTGGCATCTACAGCATGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCTCATAAGCTCTACTATTGATGGGCTGGCATCTACAGCATGACA  700

seq1  AGTGTTCAATTCAGTTACAAATGCACATTTGAGTTTCTTGCTGCCACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCAATTCAGTTACAAATGCACATTTGAGTTTCTTGCTGCCACATC  750

seq1  GTAAGCAGGTCTGAAATATGCTGTCTTATAAGGATGTCTCCATGTCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAGGTCTGAAATATGCTGTCTTATAAGGATGTCTCCATGTCCCCA  800

seq1  CCGCCGCCAGTCTCCAAGTCATTATGGTTTCTTCAGCCCTCAGAACATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCGCCAGTCTCCAAGTCATTATGGTTTCTTCAGCCCTCAGAACATTT  850

seq1  TTAGGAGATTTTCTTTGACCTGCTTGCCTTTGACAGGTACATAAGAACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGATTTTCTTTGACCTGCTTGCCTTTGACAGGTACATAAGAACCC  900

seq1  AGTAAACTGACAGAATGAAGATTAACTGAGATGCCAAGAATAGTTTTTA-  949
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  AGTAAACTGACAGAATG-AGATTAACTGAGATGCCAAGAATAGTTTTTAT  949

seq1  TTGCAAGCAGTGAGCAGAAAGAGATGTCTTCTCACAGAGTGGCCACCGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGCAGTGAGCAGAAAGAGATGTCTTCTCACAGAGTGGCCACCGGG  999

seq1  TCTGCCGTTAACTAAACCTCTGATAACCTTTCATTGGTTTAAAGCACATG  1049
      ||||||||| |||||| |||||||||||||||||| ||||||||||||||
seq2  TCTGCCGTT-ACTAAA-CTCTGATAACCTTTCATT-GTTTAAAGCACATG  1046

seq1  AACTAGCCTTTTGTTATCAGGTGTACATCATCTCTGCCATGTGGGACATT  1099
      ||||||||||||||||||| ||||||||||||||||| ||  || |||||
seq2  AACTAGCCTTTTGTTATCA-GTGTACATCATCTCTGCAATTGGGAACATT  1095

seq1  TTCTTAGGGATATACAAGTAATACTCCAT-GTAGCCTGCTAGGTCCTCAA  1148
      |||||||||| |||||||| ||||||||| |||| |||||||||||||| 
seq2  TTCTTAGGGAAATACAAGT-ATACTCCATGGTAG-CTGCTAGGTCCTCA-  1142

seq1  TGGTCACATCATCCACATAGA  1169
        ||||  |||| ||||||||
seq2  -TGTCA-TTCAT-CACATAGA  1160

seq1: chr2_163354952_163356116
seq2: B6Ng01-122I06.g_67_1244 (reverse)

seq1  ACAAAGG--ACAACATTTAATTGGGGCTGGCTTA-CAGGTTCAGAGGTT-  46
      |||||||  |||||||| |||||||||||||| | |||||||  ||||| 
seq2  ACAAAGGACACAACATTAAATTGGGGCTGGCTAACCAGGTTCGAAGGTTC  50

seq1  CAGT-CCATTATCATCAAGGTGGGAACA-TGG-CAGTGTCTAGGCAGAC-  92
      |||| ||||||||||||| ||||||||| ||| |||||| ||||| ||| 
seq2  CAGTACCATTATCATCAA-GTGGGAACACTGGCCAGTGT-TAGGC-GACA  97

seq1  ATGGTTCAGGAGTTACTGAGAGTTCTACATCTTCACCTGAAGGCTGCTAG  142
      | ||| |||||| ||||| ||||||||||||||||| |||||||||| ||
seq2  AGGGTCCAGGAG-TACTGGGAGTTCTACATCTTCACTTGAAGGCTGC-AG  145

seq1  CAGAATACTGACTTCCAGGCAGCTAGGATGAGGGT-CTTAAAGCCCAC-A  190
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  CAGAATACTGACTTCCAGGCAGCTAGGATGAGGGTCCTTAAAGCCCACAA  195

seq1  CCCACAGT-GACACA-CCTACTCCAACAGGGCCACACCTCCTAAAAGTG-  237
      |||||||| |||||| ||||||||||||||||   |||||||||||||| 
seq2  CCCACAGTGGACACACCCTACTCCAACAGGGCACAACCTCCTAAAAGTGC  245

seq1  CCACTCCCTGGACTG-AGCACATGC-AAAACATCGCACCCAGGTACCTAG  285
      ||||||||||||||| ||||||||| ||||| ||||||||||||||||||
seq2  CCACTCCCTGGACTGAAGCACATGCAAAAACTTCGCACCCAGGTACCTAG  295

seq1  GGTGCTGGATGACTTTGGTTGCCAAAGCTGTCCTGAG-CCAGTGGCA-CC  333
      |||||||||||||||| |||||| ||||||||||||| ||||||||| ||
seq2  GGTGCTGGATGACTTTTGTTGCCCAAGCTGTCCTGAGCCCAGTGGCACCC  345

seq1  TGGGCTCATTGTCTCAGAAGAACAAG-AAATGTAGACAAGGAGAGAGTAG  382
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGGGCTCATTGTCTCAGAAGAACAAGAAAATGTAGACAAGGAGAGAGTAG  395

seq1  AACGACCATACATCTGTTAAGAAAAGGGGAAAGACCTCCTAGAGTGAAGA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACCATACATCTGTTAAGAAAAGGGGAAAGACCTCCTAGAGTGAAGA  445

seq1  ACACCCTCGTGCCTGCCTCCCCTGTGGTCTTTGACGGGTGTCATGGTGGG  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTCGTGCCTGCCTCCCCTGTGGTCTTTGACGGGTGTCATGGTGGG  495

seq1  AGCTAAATGCAGACTGAGGTAATCTTTATTAGGACTGGTCATTTCTAGTG  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAATGCAGACTGAGGTAATCTTTATTAGGACTGGTCATTTCTAGTG  545

seq1  CATCCTGGTCTGAAATTCTGAAACGGTGAGATGTCCACATGCACTACAAA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGGTCTGAAATTCTGAAACGGTGAGATGTCCACATGCACTACAAA  595

seq1  GCTCTCTTGGCTCAACTAAGGAACTCCCTGTGTCCTGGAATGATCTTGAA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTGGCTCAACTAAGGAACTCCCTGTGTCCTGGAATGATCTTGAA  645

seq1  CCTCTGCTCTTTCTTCCCTTCCAAACGCACCACTACGTCCAGCTCGTCAA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTCTTTCTTCCCTTCCAAACGCACCACTACGTCCAGCTCGTCAA  695

seq1  CCTCATCCTTTTACGCGTGGAGACCCAGTTCCCCCAATGCGCTGGAGTTT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCTTTTACGCGTGGAGACCCAGTTCCCCCAATGCGCTGGAGTTT  745

seq1  GGTTGTATTTCATTTGAGATATTTGCTTTCTGGAAGAATTTGCTTCTGGA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTATTTCATTTGAGATATTTGCTTTCTGGAAGAATTTGCTTCTGGA  795

seq1  ATCCACAACCCATCTTCCTTGGCATCATGGTTCCCAGGCTTGTGTCCAAG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAACCCATCTTCCTTGGCATCATGGTTCCCAGGCTTGTGTCCAAG  845

seq1  ACCCCCAGTGACAAGAAGCTAACATTTGGATCCATCAGGATTGTCCCTGG  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAGTGACAAGAAGCTAACATTTGGATCCATCAGGATTGTCCCTGG  895

seq1  TAGGACAATCATAGCACATAGCAAGGTCTTTACTCTGGGTCCAAGTTTTT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAATCATAGCACATAGCAAGGTCTTTACTCTGGGTCCAAGTTTTT  945

seq1  GTCCCAGCTCTTGATTCCGGCTTGCTCTTTTGGATCATTGGAACCAGCAA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGCTCTTGATTCCGGCTTGCTCTTTTGGATCATTGGAACCAGCAA  995

seq1  ATTCCTTTTTTGTTTTTGTTGTTTTACTTTGTTTTGTTTTATTTTTTTAA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTTTTGTTTTTGTTGTTTTACTTTGTTTTGTTTTATTTTTTTAA  1045

seq1  GACAAGGTTTCTCTCTGTAGCACTGGCTGTCCCTAACTAGCCTCGAACTC  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGTTTCTCTCTGTAGCACTGGCTGTCCCTAACTAGCCTCGAACTC  1095

seq1  AGAGGTCCCCCTGTTTTTTCCTCTCAAGTGCTGGGATTAAAGGCGTGTTC  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCCCCCTGTTTTTTCCTCTCAAGTGCTGGGATTAAAGGCGTGTTC  1145

seq1  ACTGGTAACCACTGCTAGGCTAACAGTGAATTC  1165
      |||||||||||||||||||||||||||||||||
seq2  ACTGGTAACCACTGCTAGGCTAACAGTGAATTC  1178