BAC Information

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BAC

Clone NameB6Ng01-123B11
Chromosome2 (Build37)
Map Location 108,069,616 - 108,181,028
singlet/doubletdoublet
Overlap genenone
Upstream geneKcna4
Downstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123B11.bB6Ng01-123B11.g
ACCDH926353DH926354
length1,1931,086
definitionDH926353|Mus musculus domesticus DNA, BAC clone: B6Ng01-123B11, 5' end.DH926354|Mus musculus domesticus DNA, BAC clone: B6Ng01-123B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,069,616 - 108,070,672)(108,179,935 - 108,181,028)
sequence
gaattccttagtggcattctaaatctttttctacttgcagaaaagtgtat
ctataaattctcaaagacacttgtttgtacaacaaatggagactatcaca
gaaaatcacaaccggacttaatacaaagatcagcaagatataagaagccc
tcccccaatggatacctctgtagcacatctgtacctacagctcagagaac
tttacaagaaaaatgaaagaaagacacttatatccagaatacaagtctat
tgtgagactgcctgttctagaaatgtctgcataaacaagacctgaacaat
gacaatatcagtagacatgctaatatgaaaggaaccatctcaaaacctct
agagaaaaaactatgggaaaatagtgacttgaggtatagaaagttagcct
ctcccagcaatgagttcctacaaaatggtctacactaaattcatatacac
acaaacaacaaaaattggctgggcaaattatatttgtatatttgtacata
cacatatacatgcatacataaatacatatattattatatacagacagaca
tagcatgtacatacattttattatatatgaatatagtatatacaaacata
tattatatatttgaatttatatatataaacaaatgataccataatctgag
agcagtaaagacatgggaaggcttgtagggagaagatataagaagggctg
gcaatagaaaagaaatgggaggaatgataaaattatattttcattaaaat
gtataatgtataaatgatgaaatgaataaatgaataaataataggaaata
aaaacaaataaaatactcaaatagataaagtaaatgcagttagtattttg
gagagataaatttttgggccacgtttgtattttctcatataaaactgagg
atattaaatttctcaatatggcttacatgggttattttgtcataaaacat
gacaaataatacctatgtcaaaattatgatatgagacttgaggtcactca
tccaaaaatatataaaacttttaatttcagttatcaaagatatattttat
ccatgggactttcataggcacctgacattctttaatattattcctcctgc
acagaattttcccaatggcatgctttgctggatcactgactctcagagac
ctggacagtagaagaagaattctgacatttccttccaaaagtc
gaattcagaggcagtttttccaagcagaacaatttagtaagaagccaaga
aatgccagtttgaatcagtcagctaggagaggtggtttgaggcagaatag
atgagttgaaccagtgagccagagttcagaaagaactagaaagtgtgagc
ttattcagcaataagctttcaatatgagaattacaactgacaaacaaaat
ttacttttacagtttcttgagctccacttagatttagttcccataccagg
tctatagcctttttaaatagaattaggcccatacatttatttatactttc
tttttcttatttttatccaatttaatagatggttgcaccaaatagactct
agacaagaatattctctccaattttcatgaaagctaatttatcttccttt
tttaaaaatgaaccgagatatggaaaaggtcataataattaatcatttgc
taattactaaaacatactaattatttctactccttaaaaataatttttgt
gctccttgcaaacaactcaagtttattggagcttttctttgctgaatcac
aaaattttgccatatgtactggaactcaaccagtctagattcaaattagt
agggaaaagtgatgtcattctctctgtgtgtctaggctggatgccttaga
catttgtaacaacagtgtttaatcataactgaaacattgctcatggaggg
aaacacatatctgagagctaagtaaaagaaaaataaaattattgcctaaa
gttattttatataagaattaagggtgaattacaatgacattctagtgtac
tttattatactgtttttgtattttctctttccttttctagttccatgcag
gtcagattgaatttaaagatgctggggaagagatgaagatctacagttag
gcttctttattaatatagactttaattctcctccacttcaaaatagtaac
tcaactttgtagagacagtacaattagataacatcctcttcttaaaatca
aggataaccacccctcagggtaaagaataagaagaattcccagtaatgga
actaagaaaaaagcaggtgttgtcttgttgatactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_108069616_108070672
seq2: B6Ng01-123B11.b_180_1239

seq1  CAAGATATAAGAAGCCCTCCCCCAATGGATACCTCTGTAGCACATCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATAAGAAGCCCTCCCCCAATGGATACCTCTGTAGCACATCTGTA  50

seq1  CCTACAGCTCAGAGAACTTTACAAGAAAAATGAAAGAAAGACACTTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGCTCAGAGAACTTTACAAGAAAAATGAAAGAAAGACACTTATAT  100

seq1  CCAGAATACAAGTCTATTGTGAGACTGCCTGTTCTAGAAATGTCTGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATACAAGTCTATTGTGAGACTGCCTGTTCTAGAAATGTCTGCATA  150

seq1  AACAAGACCTGAACAATGACAATATCAGTAGACATGCTAATATGAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGACCTGAACAATGACAATATCAGTAGACATGCTAATATGAAAGGA  200

seq1  ACCATCTCAAAACCTCTAGAGAAAAAACTATGGGAAAATAGTGACTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCAAAACCTCTAGAGAAAAAACTATGGGAAAATAGTGACTTGAG  250

seq1  GTATAGAAAGTTAGCCTCTCCCAGCAATGAGTTCCTACAAAATGGTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAAAGTTAGCCTCTCCCAGCAATGAGTTCCTACAAAATGGTCTAC  300

seq1  ACTAAATTCATATACACACAAACAACAAAAATTGGCTGGGCAAATTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATTCATATACACACAAACAACAAAAATTGGCTGGGCAAATTATAT  350

seq1  TTGTATATTTGTACATACACATATACATGCATACATAAATACATATATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATTTGTACATACACATATACATGCATACATAAATACATATATTA  400

seq1  TTATATACAGACAGACATAGCATGTACATACATTTTATTATATATGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACAGACAGACATAGCATGTACATACATTTTATTATATATGAATA  450

seq1  TAGTATATACAAACATATATTATATATTTGAATTTATATATATAAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATACAAACATATATTATATATTTGAATTTATATATATAAACAAA  500

seq1  TGATACCATAATCTGAGAGCAGTAAAGACATGGGAAGGCTTGTAGGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCATAATCTGAGAGCAGTAAAGACATGGGAAGGCTTGTAGGGAGA  550

seq1  AGATATAAGAAGGGCTGGCAATAGAAAAGAAATGGGAGGAATGATAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAAGAAGGGCTGGCAATAGAAAAGAAATGGGAGGAATGATAAAAT  600

seq1  TATATTTTCATTAAAATGTATAATGTATAAATGATGAAATGAATAAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCATTAAAATGTATAATGTATAAATGATGAAATGAATAAATGA  650

seq1  ATAAATAATAGGAAATAAAAACAAATAAAATACTCAAATAGATAAAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATAGGAAATAAAAACAAATAAAATACTCAAATAGATAAAGTAA  700

seq1  ATGCAGTTAGTATTTTGGAGAGATAAATTTTTGGGCCACGTTTGTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTAGTATTTTGGAGAGATAAATTTTTGGGCCACGTTTGTATTTT  750

seq1  CTCATATAAAACTGAGGATATTAAATTTCTCAATATGGCTTACATGGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||| | 
seq2  CTCATATAAAACTGAGGATATTAAATTTCTCAATATGGCTTACATGGGTT  800

seq1  TTTTTGTCAATAAAACATGACAAATAATACCTATGTCAAAATTATGATAT  850
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTC-ATAAAACATGACAAATAATACCTATGTCAAAATTATGATAT  849

seq1  GAGACTTGAGGTCACTCATCCAAAAATATTATAAAACTTTTAATTTCAGT  900
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  GAGACTTGAGGTCACTCATCCAAAAATA-TATAAAACTTTTAATTTCAG-  897

seq1  TTATCAAAGATATAATTTTAATCCATGGGAC-TTCATAAGCATCTGACAT  949
      ||||||||||||||  ||| ||||||||||| |||||| ||| |||||||
seq2  TTATCAAAGATATA--TTTTATCCATGGGACTTTCATAGGCACCTGACAT  945

seq1  TCTTTAATATTA-TCCT-CTGCAACAGAATTTTTCCAATTGCATGCTTTG  997
      |||||||||||| |||| |||| |||||||||| ||||| ||||||||||
seq2  TCTTTAATATTATTCCTCCTGC-ACAGAATTTTCCCAATGGCATGCTTTG  994

seq1  CTGGATCACTGACTC-CA-AGACCT-GACAGTAGAAG-AGAATTCTGACA  1043
      ||||||||||||||| || |||||| ||||||||||| ||||||||||||
seq2  CTGGATCACTGACTCTCAGAGACCTGGACAGTAGAAGAAGAATTCTGACA  1044

seq1  -TTCCTT-CAAAAGTC  1057
       |||||| ||||||||
seq2  TTTCCTTCCAAAAGTC  1060

seq1: chr2_108179935_108181028
seq2: B6Ng01-123B11.g_69_1154 (reverse)

seq1  AAGTATCAACATAGCAACACCTGCTTTCTTCTTAGTTCCATTTACTTGGA  50
      |||||||||||   ||||||||||||| |||||||||||| ||||| |||
seq2  AAGTATCAACAAGACAACACCTGCTTTTTTCTTAGTTCCA-TTACTGGGA  49

seq1  ATTTCTTTCTATTCTTTTACCCTGAGGGGGTGTTTATCCTTGATTTTATG  100
      | |||||  ||||| |||||||||| |||||| ||||||||||||||| |
seq2  A-TTCTTCTTATTC-TTTACCCTGA-GGGGTGGTTATCCTTGATTTTAAG  96

seq1  AAGA-GATGTTATCTAATTGTACTTGTCTCTTACAAAGTTGAGTTACTAT  149
      |||| |||||||||||||||||| |||||| |||||||||||||||||| 
seq2  AAGAGGATGTTATCTAATTGTAC-TGTCTC-TACAAAGTTGAGTTACTA-  143

seq1  TTTTTGAAGTGGAGGAGAATTAAAGTCTATATTAATAAAGAAGCCTAACT  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTGAAGTGGAGGAGAATTAAAGTCTATATTAATAAAGAAGCCTAACT  192

seq1  GTAGATCTTCATCTCTTCCCCAGCATCTTTAAATTCAATCCTGACCTGCA  249
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTAGATCTTCATCTCTTCCCCAGCATCTTTAAATTCAAT-CTGACCTGCA  241

seq1  TGGAACTAGAAAAGGAAAGAGAAAATACAAAAACAGTATAATAAAGTACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTAGAAAAGGAAAGAGAAAATACAAAAACAGTATAATAAAGTACA  291

seq1  CTAGAATGTCATTGTAATTCACCCTTAATTCTTATATAAAATAACTTTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATGTCATTGTAATTCACCCTTAATTCTTATATAAAATAACTTTAG  341

seq1  GCAATAATTTTATTTTTCTTTTACTTAGCTCTCAGATATGTGTTTCCCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAATTTTATTTTTCTTTTACTTAGCTCTCAGATATGTGTTTCCCTC  391

seq1  CATGAGCAATGTTTCAGTTATGATTAAACACTGTTGTTACAAATGTCTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCAATGTTTCAGTTATGATTAAACACTGTTGTTACAAATGTCTAA  441

seq1  GGCATCCAGCCTAGACACACAGAGAGAATGACATCACTTTTCCCTACTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCAGCCTAGACACACAGAGAGAATGACATCACTTTTCCCTACTAA  491

seq1  TTTGAATCTAGACTGGTTGAGTTCCAGTACATATGGCAAAATTTTGTGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATCTAGACTGGTTGAGTTCCAGTACATATGGCAAAATTTTGTGAT  541

seq1  TCAGCAAAGAAAAGCTCCAATAAACTTGAGTTGTTTGCAAGGAGCACAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAAGAAAAGCTCCAATAAACTTGAGTTGTTTGCAAGGAGCACAAA  591

seq1  AATTATTTTTAAGGAGTAGAAATAATTAGTATGTTTTAGTAATTAGCAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTTAAGGAGTAGAAATAATTAGTATGTTTTAGTAATTAGCAAA  641

seq1  TGATTAATTATTATGACCTTTTCCATATCTCGGTTCATTTTTAAAAAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATTATTATGACCTTTTCCATATCTCGGTTCATTTTTAAAAAAGG  691

seq1  AAGATAAATTAGCTTTCATGAAAATTGGAGAGAATATTCTTGTCTAGAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAATTAGCTTTCATGAAAATTGGAGAGAATATTCTTGTCTAGAGT  741

seq1  CTATTTGGTGCAACCATCTATTAAATTGGATAAAAATAAGAAAAAGAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGGTGCAACCATCTATTAAATTGGATAAAAATAAGAAAAAGAAAG  791

seq1  TATAAATAAATGTATGGGCCTAATTCTATTTAAAAAGGCTATAGACCTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATAAATGTATGGGCCTAATTCTATTTAAAAAGGCTATAGACCTGG  841

seq1  TATGGGAACTAAATCTAAGTGGAGCTCAAGAAACTGTAAAAGTAAATTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAACTAAATCTAAGTGGAGCTCAAGAAACTGTAAAAGTAAATTTT  891

seq1  GTTTGTCAGTTGTAATTCTCATATTGAAAGCTTATTGCTGAATAAGCTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCAGTTGTAATTCTCATATTGAAAGCTTATTGCTGAATAAGCTCA  941

seq1  CACTTTCTAGTTCTTTCTGAACTCTGGCTCACTGGTTCAACTCATCTATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTAGTTCTTTCTGAACTCTGGCTCACTGGTTCAACTCATCTATT  991

seq1  CTGCCTCAAACCACCTCTCCTAGCTGACTGATTCAAACTGGCATTTCTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAAACCACCTCTCCTAGCTGACTGATTCAAACTGGCATTTCTTG  1041

seq1  GCTTCTTACTAAATTGTTCTGCTTGGAAAAACTGCCTCTGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTACTAAATTGTTCTGCTTGGAAAAACTGCCTCTGAATTC  1086