BAC Information

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BAC

Clone NameB6Ng01-123C22
Chromosome15 (Build37)2 (Build37)
Map Location 32,715,211 - 32,715,656148,385,287 - 148,386,313
singlet/doubletsingletsinglet
Overlap geneLOC100040962
Upstream geneTas2r119, 0610007N19Rik, Sema5a
Downstream geneSdc2, Pgcp, 1700084J12Rik, Tspyl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123C22.bB6Ng01-123C22.g
ACCDH926420DH926421
length1,0101,030
definitionDH926420|Mus musculus domesticus DNA, BAC clone: B6Ng01-123C22, 5' end.DH926421|Mus musculus domesticus DNA, BAC clone: B6Ng01-123C22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,715,211 - 32,715,656)(148,385,287 - 148,386,313)
sequence
gaattcagaacttttcagctggggaacgaggtaagtctgatcttgaactt
tctaaggaaattcaggacagtctatcagaagtaaagtggaaaatgtttgg
ccttgaattttttctagtgttaggagcccttttgttccttttcacatgtt
atatagtgcttaagatagggctgaaaattctagaggaaattcagggcagt
ctatcagaagtaaagcggggagagagagtaggagcaaggagaaacggtaa
gtatacaggcctttccaagggtcttgaacccgaggaaaagttaaggttag
gtaggaatacctggagagagattagaagaaaaagaggaaaaagggagaag
aaaaaagatcgattagcggaggtctctaggagatactcgtcactagatga
gctcaggaagccagctcttagtaactctgaagcaagtgaagaatcctcct
ctgaggaaacagactgggaggaagaagcagcccattaccagccagctaat
tggtcaagaaaaaagccaaaagcggctggcgaaggccagtttgctaattg
gcctcagggcaatcggctaccaggtgcactcccgccctatgcggagtccc
cgccctgcgtagtgcgtcagcccgtagtgcgtcagcagtgcgcagaaagg
cagtgcgcagactcattcattccccgagaggaacaaaggaaaatacaaca
ggcatttccagtctttaaaggagccgagggtgggcgtgtccacgctccgg
tagaatatgtgcagattaaatatggaatcaatgctaattttaccttggtg
cagttagacaggcttgccagcatggcactaactcctgccgactggcaaat
gattgcaaaagccgctctccctaatatgggcaaatatttggaatggagat
ctctgtggcgagaggctgcacagcgcaagcccgagcaaacgctgctgctt
taactccagagcagagagattggacttttgactgttaacgggtcagagag
cttatctgct
gcacagtattatctaaacaaatctccttctttaataaatcacacactctc
aaatagtctgctatagaaacaacagaccaagacagtgccttttccaacag
tggaaaagtatctcctctctgttgatataaatgaggctcggacacaggtt
cctggaggtgcagtggggaggggggcaacaaccaagcctacaccagtgta
gaatcctgatgtatggagaacacttgcctcatatggggtctgtggcttag
gttactggattcatacaacccaaatgttctgaccaaaggaaggccgcttc
agccacaagtacacctgactctttagacaactcacatggctacagtgcaa
ggcagaggcccttcaccatttattcataataggttttagtggtctctgcc
acagggtggttgtgccagagtccaaatcccctatcctcaagttggtccgt
agtggcaatattttgaacactggaagtttgacaggccatataccctgttg
tattcatgatagctgagcaccagtcctccctagcctggtaccatcacccc
atgtttattgagctgcagggggaataagacatagctgactggattgcatg
tttggtcctttttttcactgggcctagtgttgaggcattaattccaatgt
gctttatattttaaaaatgattctgctcaatttttcagtgaacctaaact
tgctttgcaaaagaaagtctatagaaattaaagtaagcagatttgacata
gattatgaattaaaaagaaatgaacagatcatttgttgtgtttccctgca
gtccagttgggagctacatggctgcaggtttcttgccaacaaatacaaac
aaagtaaatattaatctgttcatcagtagccatgcatcaggggcttactt
cgaccttggggctgagtcctgggactgcagaaaatagtgtaatattcaca
gaaacaacatctttcccatgggtttctgagttaattgcagatggacctgg
aaatcacatggctcctgttccttgggactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_32715211_32715656
seq2: B6Ng01-123C22.b_45_441 (reverse)

seq1  TCTAGTGATGAGTATAGGCTCCTTCTCCTAGAGACCTCCGCTAATTGATC  50
      |||||||| |||||         |||||||||||||||||||||| ||||
seq2  TCTAGTGACGAGTA---------TCTCCTAGAGACCTCCGCTAATCGATC  41

seq1  TTTTTTCTTTTCC------------TTCCTTCTAATCTCTCCCCAGGTAT  88
      ||||||||| |||            || ||||||||||||| ||||||||
seq2  TTTTTTCTTCTCCCTTTTTCCTCTTTTTCTTCTAATCTCTCTCCAGGTAT  91

seq1  TCTTACCTGACCTAAACTTTTCCTCAGGTTCAAGACCCGTGGAAAGGCCT  138
      || ||||| |||| ||||||||||| |||||||||||| |||||||||||
seq2  TCCTACCTAACCTTAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCT  141

seq1  ATATACTTATTTTGTGTACAATATTTCCTCTTTGCTCCTACTCTCTCTCC  188
       |||||||            |   || ||| |||||||||||||||||||
seq2  GTATACTT------------ACCGTTTCTCCTTGCTCCTACTCTCTCTCC  179

seq1  CCGCTTTACTTCTGATAGATTGCCCTGAATTTCATCCAGAATTTTCAGCC  238
      ||||||||||||||||||| ||||||||||||| || |||||||||||||
seq2  CCGCTTTACTTCTGATAGACTGCCCTGAATTTCCTCTAGAATTTTCAGCC  229

seq1  CTGCCTTAACCGCTTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAAC  288
      ||  ||||| | ||  ||||||||||||||||||||||||||||||||||
seq2  CTATCTTAAGCACTATATAACATGTGAAAAGGAACAAAAGGGCTCCTAAC  279

seq1  ACTAGAAAAAGTTCAAGGCCAAACATACCTTGTAAAGCTATTTCCCACTT  338
      |||||||||| |||||||||||||               |||| ||||||
seq2  ACTAGAAAAAATTCAAGGCCAAAC---------------ATTTTCCACTT  314

seq1  TACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGACCAGACT  388
      |||||||||||||||||| |||||||| ||||||||||||||| ||||||
seq2  TACTTCTGATAGACTGTCCTGAATTTCCTTAGAAAGTTCAAGATCAGACT  364

seq1  TACCTTGTAAAGCTATACTTACGGGTACCCTGTTCCCCAGCTGAAGAGTT  438
      |||||                          |||||||||||||| ||||
seq2  TACCT-------------------------CGTTCCCCAGCTGAAAAGTT  389

seq1  CTGAATTC  446
      ||||||||
seq2  CTGAATTC  397

seq1: chr2_148385287_148386313
seq2: B6Ng01-123C22.g_78_1107 (reverse)

seq1  GAGTCCAAAGG-ACAGGAGCCATGTGA-TTCCAGGTCACTCTGCAATTAA  48
      |||||| |||| ||||||||||||||| |||||||||  |||||||||||
seq2  GAGTCCCAAGGAACAGGAGCCATGTGATTTCCAGGTCCATCTGCAATTAA  50

seq1  CTCAGAAACCCATGGG-AAGATGTTTGTTCTTGTGAATA-TACACTA-TT  95
      |||||||||||||||| |||||| |||||  |||||||| ||||||| ||
seq2  CTCAGAAACCCATGGGAAAGATG-TTGTTTCTGTGAATATTACACTATTT  99

seq1  TCTGCAGTCCCAGGACTCAGCCCCAAGGTCGAAGTAAGCCCCTGATTGCA  145
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTGCAGTCCCAGGACTCAGCCCCAAGGTCGAAGTAAGCCCCTGA-TGCA  148

seq1  TGGCTACTGATGAACAGATTAATATTTTACTTTGTTTGTATTTGTTGGCA  195
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGCTACTGATGAACAGATTAATA-TTTACTTTGTTTGTATTTGTTGGCA  197

seq1  AGAAACCTGCAGCCATGTAGCTCCCAACTGGACTGCAGGGAAACACAAC-  244
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGAAACCTGCAGCCATGTAGCTCCCAACTGGACTGCAGGGAAACACAACA  247

seq1  AATGATCTGTTCATTTCTTTTTAATTCATAATCTATGTCAAATCTGCTTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTGTTCATTTCTTTTTAATTCATAATCTATGTCAAATCTGCTTA  297

seq1  CTTTAATTTCTATAGACTTTCTTTTGCAAAGCAAGTTTAGGTTCACTGAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTTCTATAGACTTTCTTTTGCAAAGCAAGTTTAGGTTCACTGAA  347

seq1  AAATTGAGCAGAATCATTTTTAAAATATAAAGCACATTGGAATTAATGCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAGCAGAATCATTTTTAAAATATAAAGCACATTGGAATTAATGCC  397

seq1  TCAACACTAGGCCCAGTGAAAAAAAGGACCAAACATGCAATCCAGTCAGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACTAGGCCCAGTGAAAAAAAGGACCAAACATGCAATCCAGTCAGC  447

seq1  TATGTCTTATTCCCCCTGCAGCTCAATAAACATGGGGTGATGGTACCAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTTATTCCCCCTGCAGCTCAATAAACATGGGGTGATGGTACCAGG  497

seq1  CTAGGGAGGACTGGTGCTCAGCTATCATGAATACAACAGGGTATATGGCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGAGGACTGGTGCTCAGCTATCATGAATACAACAGGGTATATGGCC  547

seq1  TGTCAAACTTCCAGTGTTCAAAATATTGCCACTACGGACCAACTTGAGGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAACTTCCAGTGTTCAAAATATTGCCACTACGGACCAACTTGAGGA  597

seq1  TAGGGGATTTGGACTCTGGCACAACCACCCTGTGGCAGAGACCACTAAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGATTTGGACTCTGGCACAACCACCCTGTGGCAGAGACCACTAAAA  647

seq1  CCTATTATGAATAAATGGTGAAGGGCCTCTGCCTTGCACTGTAGCCATGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTATGAATAAATGGTGAAGGGCCTCTGCCTTGCACTGTAGCCATGT  697

seq1  GAGTTGTCTAAAGAGTCAGGTGTACTTGTGGCTGAAGCGGCCTTCCTTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTCTAAAGAGTCAGGTGTACTTGTGGCTGAAGCGGCCTTCCTTTG  747

seq1  GTCAGAACATTTGGGTTGTATGAATCCAGTAACCTAAGCCACAGACCCCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAACATTTGGGTTGTATGAATCCAGTAACCTAAGCCACAGACCCCA  797

seq1  TATGAGGCAAGTGTTCTCCATACATCAGGATTCTACACTGGTGTAGGCTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGCAAGTGTTCTCCATACATCAGGATTCTACACTGGTGTAGGCTT  847

seq1  GGTTGTTGCCCCCCTCCCCACTGCACCTCCAGGAACCTGTGTCCGAGCCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTGCCCCCCTCCCCACTGCACCTCCAGGAACCTGTGTCCGAGCCT  897

seq1  CATTTATATCAACAGAGAGGAGATACTTTTCCACTGTTGGAAAAGGCACT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATATCAACAGAGAGGAGATACTTTTCCACTGTTGGAAAAGGCACT  947

seq1  GTCTTGGTCTGTTGTTTCTATAGCAGACTATTTGAGAGTGTGTGATTTAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTCTGTTGTTTCTATAGCAGACTATTTGAGAGTGTGTGATTTAT  997

seq1  TAAAGAAGGAGATTTGTTTAGATAATACTGTGC  1027
      |||||||||||||||||||||||||||||||||
seq2  TAAAGAAGGAGATTTGTTTAGATAATACTGTGC  1030