BAC Information

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BAC

Clone NameB6Ng01-123H23
Chromosome2 (Build37)
Map Location 42,340,961 - 42,458,597
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC625094
Downstream geneLOC100041228, LOC100041245, Kynu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123H23.bB6Ng01-123H23.g
ACCDH926646DH926647
length1,1101,040
definitionDH926646|Mus musculus domesticus DNA, BAC clone: B6Ng01-123H23, 5' end.DH926647|Mus musculus domesticus DNA, BAC clone: B6Ng01-123H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,457,477 - 42,458,597)(42,340,961 - 42,342,023)
sequence
gaattcctaaaatttaatgttggacaactcctttgttaatgctgtgttta
cccccatgctcctagagtttgtgaagttgtgactttaatctgtccagcct
tatgactcaatatctacaacttgaagatcattactaaaatgtacctgagt
atttcagtttaattcatttgacactctctttatacagtgtacagagaagt
cacctaatgagtggaaaatgataattcatgtctgcctcccagtaatataa
ataaatgatcatcatagttttgatgttgtggtggtggtggtcttgtgtta
ttaatttttattattttatttcaatgttgtggattgaataaaaggctgga
tgtgtactaaacaagcacctgatgctaagttccccacttcatctagtagt
ttaatactagtaaatatgtagtctttttcagaggtcttagaagacctatt
aaatatttctatctgtggactgacatattctattacctgctagtatatgg
tgtatattataatatactttttaaaaactataatttttgtttgtacctat
tcatcaatagtcttttttttttaaatatggaaaacctgggtaaagatgat
ttagcttgtcttctaacagctctcttcttgtgttccttcatcccaagtac
tgacctcactctctacatttcactgaaaaggctggaggaaaagtcctttc
tcagtgttctatcacaaccaagaaacaccgagaacaaaagaggacgtgag
gaggaaaagggttcatttggtttacatttccacatcacacctcatcatca
aaagaagtcaggacaggaacttgaatggcacaggaatccagctgtaggag
ctgatgcagagccatggaaaggtgctgcttactgaattgattctcatagc
ttgctcagccagcttctgatagaccatgaccaccagagctatggcattct
gcaaattggtcttgggtcttcctccatcaatcactaattaagtaaaggtc
cttaaaattacccatacagcccaatttttagaggcatttcttatgctatt
tcctccctctcaaagactttacctggggtaggttgtaaaatattcggcag
caccttgaga
gaattcctcttctggctttgctcaatgatggactaaaaacggtatggtaa
aataaaccctttcttccccaagttatttgggtcatggtgtttaatgaaag
caggagaaaacctaactaagacagtaaatgagaatgtttgattaaggtaa
cagagaaattttaatatgtttgcatggacaaatgtattccttttgtttga
ataattcgatatctgaagtaatatgaatttctgtgtaccattatctattt
agaaattattcttaagtagttaataactgccattctaattatatctatga
atatattctatactcacgattcttctaagtttatggttttattaaattca
ctttttttttcttttaaacgggcttagtgtccctgactaaccttgaaatc
cttgaactcctggtcttcctccttccattacctacagctgtggttattca
ttgacaccgtcacagcttcccttatacaggaagccttactatatttgcat
tagtttggatactaagtaatcgtgggcttgacagagtaacttttcattac
ttttcacatcattcatattttctacttagtatttactatatagcagaaac
acttctccttcagttatgtgttggttgatctgttttgatttctttcattg
agagtcctagagatttagtcaagagcttggtagaccacagattattactt
attcacaacgcttgatcaaagcttacagaaacatttcgaaaattagttct
ttacagatccccttttctctttaaaagaaaaatagactgtacatttcact
gatatttcatgagggctatgaggttttctgtggtccttgaagtgaaaatt
acaggtgtatttcaagctgcattctcatatagttatatgactattagact
caaactagtgcagacagtgcactgacaatctgtacactgtgatgagttca
gttttgtgaacagttgagcggtaaacattgttctgattcttgacttgaaa
aaaaaatgaacatattgactgtctaaacatttaatttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_42457477_42458597
seq2: B6Ng01-123H23.b_47_1156 (reverse)

seq1  TCTC-AGGTGCTGTACTAGCTAATTTTTATCAACCTAACACAAGATAAAG  49
      |||| ||||||||      | ||| |||  |||||| || | || |||||
seq2  TCTCAAGGTGCTG-----CCGAATATTTTACAACCT-ACCCCAGGTAAAG  44

seq1  TCATTTGAGA-GGAGGAAATTACAATTAAGAAAATGCCTCTATAAAATTG  98
      || ||||||| |||||||||  ||  |||| ||||||||||| |||||||
seq2  TC-TTTGAGAGGGAGGAAATAGCA--TAAG-AAATGCCTCTA-AAAATTG  89

seq1  GGCTGTATGGGTAATTTTAAGGACATTTACTTAATTAGTGATTGATGGAG  148
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGCTGTATGGGTAATTTTAAGGACCTTTACTTAATTAGTGATTGATGGAG  139

seq1  GAAGACCC-AGACCATTTTGCAGAATGCCATAGCTCTGGTGGTTCATGGT  197
      |||||||| |||||| |||||||||||||||||||||||||| |||||| 
seq2  GAAGACCCAAGACCAATTTGCAGAATGCCATAGCTCTGGTGG-TCATGG-  187

seq1  TCTATCAGAAGCTGGCTGAGCAAGCTATGAGAATCAATTCAGTAAGCAGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAGAAGCTGGCTGAGCAAGCTATGAGAATCAATTCAGTAAGCAGC  237

seq1  ACCTTTCCATGGCTTCTGCATCAGCTCCTACAGCTGGATTCCTGTGCCAT  297
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCATGGC-TCTGCATCAGCTCCTACAGCTGGATTCCTGTGCCAT  286

seq1  TCAAGTTCCTGTCCTGACTTCTTTTGATGATGAGGTGTGATGTGGAAATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCCTGTCCTGACTTCTTTTGATGATGAGGTGTGATGTGGAAATG  336

seq1  TAAACCAAATGAACCCTTTTCCTCCTCACGTCCTCTTTTGTTCTCGGTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAAATGAACCCTTTTCCTCCTCACGTCCTCTTTTGTTCTCGGTGT  386

seq1  TTCTTGGTTGTGATAGAACACTGAGAAAGGACTTTTCCTCCAGCCTTTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTTGTGATAGAACACTGAGAAAGGACTTTTCCTCCAGCCTTTTC  436

seq1  AGTGAAATGTAGAGAGTGAGGTCAGTACTTGGGATGAAGGAACACAAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATGTAGAGAGTGAGGTCAGTACTTGGGATGAAGGAACACAAGAA  486

seq1  GAGAGCTGTTAGAAGACAAGCTAAATCATCTTTACCCAGGTTTTCCATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGTTAGAAGACAAGCTAAATCATCTTTACCCAGGTTTTCCATAT  536

seq1  TTAAAAAAAAAAGACTATTGATGAATAGGTACAAACAAAAATTATAGTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAGACTATTGATGAATAGGTACAAACAAAAATTATAGTTT  586

seq1  TTAAAAAGTATATTATAATATACACCATATACTAGCAGGTAATAGAATAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTATATTATAATATACACCATATACTAGCAGGTAATAGAATAT  636

seq1  GTCAGTCCACAGATAGAAATATTTAATAGGTCTTCTAAGACCTCTGAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCCACAGATAGAAATATTTAATAGGTCTTCTAAGACCTCTGAAAA  686

seq1  AGACTACATATTTACTAGTATTAAACTACTAGATGAAGTGGGGAACTTAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACATATTTACTAGTATTAAACTACTAGATGAAGTGGGGAACTTAG  736

seq1  CATCAGGTGCTTGTTTAGTACACATCCAGCCTTTTATTCAATCCACAACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGTGCTTGTTTAGTACACATCCAGCCTTTTATTCAATCCACAACA  786

seq1  TTGAAATAAAATAATAAAAATTAATAACACAAGACCACCACCACCACAAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAAAATAATAAAAATTAATAACACAAGACCACCACCACCACAAC  836

seq1  ATCAAAACTATGATGATCATTTATTTATATTACTGGGAGGCAGACATGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACTATGATGATCATTTATTTATATTACTGGGAGGCAGACATGAA  886

seq1  TTATCATTTTCCACTCATTAGGTGACTTCTCTGTACACTGTATAAAGAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTTTCCACTCATTAGGTGACTTCTCTGTACACTGTATAAAGAGA  936

seq1  GTGTCAAATGAATTAAACTGAAATACTCAGGTACATTTTAGTAATGATCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAATGAATTAAACTGAAATACTCAGGTACATTTTAGTAATGATCT  986

seq1  TCAAGTTGTAGATATTGAGTCATAAGGCTGGACAGATTAAAGTCACAACT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTGTAGATATTGAGTCATAAGGCTGGACAGATTAAAGTCACAACT  1036

seq1  TCACAAACTCTAGGAGCATGGGGGTAAACACAGCATTAACAAAGGAGTTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACTCTAGGAGCATGGGGGTAAACACAGCATTAACAAAGGAGTTG  1086

seq1  TCCAACATTAAATTTTAGGAATTC  1121
      ||||||||||||||||||||||||
seq2  TCCAACATTAAATTTTAGGAATTC  1110

seq1: chr2_42340961_42342023
seq2: B6Ng01-123H23.g_67_1106

seq1  GAATTCCTCTTCTGGCTTTGCTCAATGATGGACTAAAAACGGTATGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCTGGCTTTGCTCAATGATGGACTAAAAACGGTATGGTAA  50

seq1  AATAAACCCTTTCTTCCCCAAGTTATTTGGGTCATGGTGTTTAATGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCCTTTCTTCCCCAAGTTATTTGGGTCATGGTGTTTAATGAAAG  100

seq1  CAGGAGAAAACCTAACTAAGACAGTAAATGAGAATGTTTGATTAAGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAAAACCTAACTAAGACAGTAAATGAGAATGTTTGATTAAGGTAA  150

seq1  CAGAGAAATTTTAATATGTTTGCATGGACAAATGTATTCCTTTTGTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATTTTAATATGTTTGCATGGACAAATGTATTCCTTTTGTTTGA  200

seq1  ATAATTCGATATCTGAAGTAATATGAATTTCTGTGTACCATTATCTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCGATATCTGAAGTAATATGAATTTCTGTGTACCATTATCTATTT  250

seq1  AGAAATTATTCTTAAGTAGTTAATAACTGCCATTCTAATTATATCTATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTATTCTTAAGTAGTTAATAACTGCCATTCTAATTATATCTATGA  300

seq1  ATATATTCTATACTCACGATTCTTCTAAGTTTATGGTTTTATTAAATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCTATACTCACGATTCTTCTAAGTTTATGGTTTTATTAAATTCA  350

seq1  CTTTTTTTTTCTTTTAAACGGGCTTAGTGTCCCTGACTAACCTTGAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTCTTTTAAACGGGCTTAGTGTCCCTGACTAACCTTGAAATC  400

seq1  CTTGAACTCCTGGTCTTCCTCCTTCCATTACCTACAGCTGTGGTTATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCCTGGTCTTCCTCCTTCCATTACCTACAGCTGTGGTTATTCA  450

seq1  TTGACACCGTCACAGCTTCCCTTATACAGGAAGCCTTACTATATTTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACCGTCACAGCTTCCCTTATACAGGAAGCCTTACTATATTTGCAT  500

seq1  TAGTTTGGATACTAAGTAATCGTGGGCTTGACAGAGTAACTTTTCATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGGATACTAAGTAATCGTGGGCTTGACAGAGTAACTTTTCATTAC  550

seq1  TTTTCACATCATTCATATTTTCTACTTAGTATTTACTATATAGCAGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACATCATTCATATTTTCTACTTAGTATTTACTATATAGCAGAAAC  600

seq1  ACTTCTCCTTCAGTTATGTGTTGGTTGATCTGTTTTGATTTCTTTCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCTTCAGTTATGTGTTGGTTGATCTGTTTTGATTTCTTTCATTG  650

seq1  AGAGTCCTAGAGATTTAGTCAAGAGCTTGGTAGACCACAGATTATTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCTAGAGATTTAGTCAAGAGCTTGGTAGACCACAGATTATTACTT  700

seq1  ATTCACAACGCTTGATCAAAGCTTACAGAAACATTTCGAAAATTAGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAACGCTTGATCAAAGCTTACAGAAACATTTCGAAAATTAGTTCT  750

seq1  TTACAGATCCCCTTTTCTCTTTAAAAAGAAAAATAGACTGTACATTTCAC  800
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTACAGATCCCCTTTTCTCTTT-AAAAGAAAAATAGACTGTACATTTCAC  799

seq1  TGATATTTCATGAGGGCTATGAGGTTTTCTGTGGTTCCTTGAAGTGAAAA  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGATATTTCATGAGGGCTATGAGGTTTTCTGTGG-TCCTTGAAGTGAAAA  848

seq1  TTTACAGGTGTTATTTTCAAGCTTGCATTCTCAATATTAGTTATATGACT  900
       ||||||||||   |||||||| ||||||||| ||| |||||||||||||
seq2  -TTACAGGTGT--ATTTCAAGC-TGCATTCTC-ATA-TAGTTATATGACT  892

seq1  ATTAGAACTCAAAACTAGTGCAGGACAGTGCACTGACAATCTGTTACACT  950
      ||||| |||| ||||||||||| |||||||||||||||||||| ||||||
seq2  ATTAG-ACTC-AAACTAGTGCA-GACAGTGCACTGACAATCTG-TACACT  938

seq1  GTGATGAGTTCAGTTTTGGTGAACAAGTTGAGCGGTTAAAACATTGGTTC  1000
      ||||||||||||||||| |||||| |||||||||||  ||||||| ||||
seq2  GTGATGAGTTCAGTTTT-GTGAAC-AGTTGAGCGGT--AAACATT-GTTC  983

seq1  TGGGTATTC-TGACTTGAAACAAAAATGGAACTATATTGAACTGTCTTAA  1049
      ||   |||| |||||||||| |||||| |||| |||||| |||||| |||
seq2  TG---ATTCTTGACTTGAAAAAAAAAT-GAAC-ATATTG-ACTGTC-TAA  1026

seq1  ACATTTAAATTTTT  1063
      |||||||| |||||
seq2  ACATTTAATTTTTT  1040