BAC Information

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BAC

Clone NameB6Ng01-124E03
Chromosome2 (Build37)13 (Build37)
Map Location 142,776,661 - 142,777,69885,391,858 - 85,392,972
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124E03.bB6Ng01-124E03.g
ACCDH927210DH927211
length9301,093
definitionDH927210|Mus musculus domesticus DNA, BAC clone: B6Ng01-124E03, 5' end.DH927211|Mus musculus domesticus DNA, BAC clone: B6Ng01-124E03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,661 - 142,777,698)(85,391,858 - 85,392,972)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagttcaccttcttgagttctttatatatgttagatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
tgaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggattgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgtgttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttattcagagacttgaagtttttatcata
cagatctttcacttccttagtttgagtcac
gaattcttggtgattttatattgacatacagccaactgaagcctccttga
tggtgtagagcctgaaaacatccaggtagcaaaaaggaaactaagtagtg
cacatcctctctgaactacatagcagggaaaaaagcatagatgcctttta
accatgtctgggtgctgtactctttaaacaataggcatctgaatcaaaca
aatttaagatgtaattatagatgctaattaatgctactttgtttcccttt
ctaaaggagatacatataaatataaatatatatgtttttatatttttcaa
tattcttccagtatgggctcaatacttaataaaccttagttctattaaat
caatcctctcaaacacatatataaatatgtatatatgtttatatatacat
atttatatatatcttaagtgtatattgctttttattacatctgtcataca
tataataaacaacattgaaacttggaaactttaaaattcagttttcttgg
aactacttataatacataagtaattgtttactatttaaaggaattttagt
ttgagtctaatatagcaagtaggtagtagatagaggaattctaatttgaa
tataatccagcaaagcagactctattactaaacctataattaaattgtac
atataatgaaattaggattcaggtttactgtcttcagtttcacaaacaaa
gatgctagaaacagcatagaactttgttttttaagtgtttttgcatattt
cagatataatatctaatggtttaggactacttaaatgttcatttttaaga
tagtaatggcatttgctattgtagttttttaaaaggagatatgttcattg
ttcacaatgagttagaagatggatggatgtgggttaccaatctaagacag
atgagcaagccttattgttgagacctagtggagaggtggtaagtttcatt
tgttcttctaatttcagatcccaagtcttttttttttttttttttttcca
tttttattagtatgaactcattacattagatcagttctttaaaaaggtta
gaagtctgttttctgtcatagacagaatatttttccttgtcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776661_142777698
seq2: B6Ng01-124E03.b_45_622 (reverse)

seq1  GGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGAC  50

seq1  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  100

seq1  TAAAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  150

seq1  ACAACTGGTTGTTATCATGTAGAAGAATGGGAATCGATCCATACTTATCT  200
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATCAATCCATACTTATCT  200

seq1  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  250

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  300

seq1  TGGGCACAGGGGACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  350
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  350

seq1  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  400
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  AGATCAAGAATTGACAAATGGGACCTCATGAAACTCCAAAGTTTCTGCAA  400

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  450

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  500
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCTAACATATAT  500

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  550
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAGAACTCAAGAAGGTGAACTTCAGAAAATCAAATAACCCCATTAAAAA  550

seq1  ATGGGGCTCACAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAT  600
      |||||||||| ||            ||| |||||    |||         
seq2  ATGGGGCTCAGAA----------CTGAACAAAGA----ATTC--------  578

seq1  TGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCC  650
                                                        
seq2  --------------------------------------------------  578

seq1  ATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTC  700
                                                        
seq2  --------------------------------------------------  578

seq1  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  750
                                                        
seq2  --------------------------------------------------  578

seq1  CTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGC  800
                                                        
seq2  --------------------------------------------------  578

seq1  TTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAA  850
                                                        
seq2  --------------------------------------------------  578

seq1  GTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACA  900
                                                        
seq2  --------------------------------------------------  578

seq1  GACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  950
                                                        
seq2  --------------------------------------------------  578

seq1  CAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACC  1000
                                                        
seq2  --------------------------------------------------  578

seq1  CCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1038
                                            
seq2  --------------------------------------  578

seq1: chr13_85391858_85392972
seq2: B6Ng01-124E03.g_65_1157 (reverse)

seq1  TTGACAAGAGAAAATTATTTCTGTCTAATGACCCAGAAAACAGACTTCTA  50
      |||||||| ||||| || |||||||| ||||  |||||||||||||||||
seq2  TTGACAAG-GAAAAATA-TTCTGTCT-ATGA--CAGAAAACAGACTTCTA  45

seq1  AACTTTTATAAAGAACTTGGGATCTAAATGTAAATGAGTTAAATACCTAA  100
      | ||||| |||||||||   ||||| ||||| ||||||||  ||| ||||
seq2  ACCTTTT-TAAAGAACT---GATCT-AATGT-AATGAGTT-CATA-CTAA  87

seq1  TAAAAAATGGAAAAAAAAAAAAAAAAAAAAAAGAACTTGGGATCTGAAAT  150
      | ||||||||||||||||||||||||||||    ||||||||||||||| 
seq2  T-AAAAATGGAAAAAAAAAAAAAAAAAAAA---GACTTGGGATCTGAAA-  132

seq1  TTAGAAGAACAAATGAAACTTACCACCTCTTCCACTAGGTCTTCAACAAT  200
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  TTAGAAGAACAAATGAAACTTACCACCTC-TCCACTAGGTC-TCAACAAT  180

seq1  AAGGCCTTGCTCATCTGTTCTTAGATTGGTAACCCACATCCATCCATCTT  250
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGG-CTTGCTCATCTG-TCTTAGATTGGTAACCCACATCCATCCATCTT  228

seq1  CTAACTCATTGTGAACAATGAACATATCTCCTTTTAAAAAACTACAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCATTGTGAACAATGAACATATCTCCTTTTAAAAAACTACAATAG  278

seq1  CAAATGCCATTACTATCTTAAAAATGAACATTTAAGTAGTCCTAAACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCCATTACTATCTTAAAAATGAACATTTAAGTAGTCCTAAACCAT  328

seq1  TAGATATTATATCTGAAATATGCAAAAACACTTAAAAAACAAAGTTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTATATCTGAAATATGCAAAAACACTTAAAAAACAAAGTTCTAT  378

seq1  GCTGTTTCTAGCATCTTTGTTTGTGAAACTGAAGACAGTAAACCTGAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCTAGCATCTTTGTTTGTGAAACTGAAGACAGTAAACCTGAATC  428

seq1  CTAATTTCATTATATGTACAATTTAATTATAGGTTTAGTAATAGAGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTCATTATATGTACAATTTAATTATAGGTTTAGTAATAGAGTCTG  478

seq1  CTTTGCTGGATTATATTCAAATTAGAATTCCTCTATCTACTACCTACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGGATTATATTCAAATTAGAATTCCTCTATCTACTACCTACTTG  528

seq1  CTATATTAGACTCAAACTAAAATTCCTTTAAATAGTAAACAATTACTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTAGACTCAAACTAAAATTCCTTTAAATAGTAAACAATTACTTAT  578

seq1  GTATTATAAGTAGTTCCAAGAAAACTGAATTTTAAAGTTTCCAAGTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATAAGTAGTTCCAAGAAAACTGAATTTTAAAGTTTCCAAGTTTCA  628

seq1  ATGTTGTTTATTATATGTATGACAGATGTAATAAAAAGCAATATACACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTTATTATATGTATGACAGATGTAATAAAAAGCAATATACACTT  678

seq1  AAGATATATATAAATATGTATATATAAACATATATACATATTTATATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATATATAAATATGTATATATAAACATATATACATATTTATATATG  728

seq1  TGTTTGAGAGGATTGATTTAATAGAACTAAGGTTTATTAAGTATTGAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGAGGATTGATTTAATAGAACTAAGGTTTATTAAGTATTGAGCC  778

seq1  CATACTGGAAGAATATTGAAAAATATAAAAACATATATATTTATATTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGGAAGAATATTGAAAAATATAAAAACATATATATTTATATTTAT  828

seq1  ATGTATCTCCTTTAGAAAGGGAAACAAAGTAGCATTAATTAGCATCTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTCCTTTAGAAAGGGAAACAAAGTAGCATTAATTAGCATCTATA  878

seq1  ATTACATCTTAAATTTGTTTGATTCAGATGCCTATTGTTTAAAGAGTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATCTTAAATTTGTTTGATTCAGATGCCTATTGTTTAAAGAGTACA  928

seq1  GCACCCAGACATGGTTAAAAGGCATCTATGCTTTTTTCCCTGCTATGTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAGACATGGTTAAAAGGCATCTATGCTTTTTTCCCTGCTATGTAG  978

seq1  TTCAGAGAGGATGTGCACTACTTAGTTTCCTTTTTGCTACCTGGATGTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAGGATGTGCACTACTTAGTTTCCTTTTTGCTACCTGGATGTTT  1028

seq1  TCAGGCTCTACACCATCAAGGAGGCTTCAGTTGGCTGTATGTCAATATAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTCTACACCATCAAGGAGGCTTCAGTTGGCTGTATGTCAATATAA  1078

seq1  AATCACCAAGAATTC  1115
      |||||||||||||||
seq2  AATCACCAAGAATTC  1093